Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01852:01898
Extra
PDB:
ATOM 1 O3' C A1851 119.400 103.378 88.445 1.00 51.54 O
ATOM 2 P C A1852 119.993 103.389 86.950 1.00 54.32 P
ATOM 3 OP1 C A1852 120.383 101.992 86.619 1.00 53.28 O
ATOM 4 OP2 C A1852 121.000 104.479 86.832 1.00 52.76 O
ATOM 5 O5' C A1852 118.741 103.766 86.041 1.00 54.36 O
ATOM 6 C5' C A1852 117.578 102.925 86.014 1.00 53.27 C
ATOM 7 C4' C A1852 117.144 102.681 84.592 1.00 52.42 C
ATOM 8 O4' C A1852 116.606 103.905 84.023 1.00 52.60 O
ATOM 9 C3' C A1852 118.232 102.214 83.631 1.00 52.42 C
ATOM 10 O3' C A1852 117.631 101.369 82.667 1.00 55.07 O
ATOM 11 C2' C A1852 118.634 103.508 82.932 1.00 52.30 C
ATOM 12 O2' C A1852 119.200 103.288 81.652 1.00 49.60 O
ATOM 13 C1' C A1852 117.272 104.190 82.812 1.00 51.66 C
ATOM 14 N1 C A1852 117.252 105.648 82.598 1.00 50.46 N
ATOM 15 C2 C A1852 116.188 106.197 81.875 1.00 48.81 C
ATOM 16 O2 C A1852 115.313 105.439 81.420 1.00 46.97 O
ATOM 17 N3 C A1852 116.139 107.537 81.688 1.00 48.52 N
ATOM 18 C4 C A1852 117.098 108.317 82.190 1.00 47.90 C
ATOM 19 N4 C A1852 116.998 109.630 81.999 1.00 47.47 N
ATOM 20 C5 C A1852 118.199 107.785 82.916 1.00 48.94 C
ATOM 21 C6 C A1852 118.237 106.457 83.097 1.00 50.41 C
ATOM 22 P A A1853 117.846 99.787 82.753 1.00 55.68 P
ATOM 23 OP1 A A1853 118.965 99.515 83.700 1.00 53.05 O
ATOM 24 OP2 A A1853 117.920 99.294 81.348 1.00 53.15 O
ATOM 25 O5' A A1853 116.494 99.245 83.394 1.00 53.91 O
TER
ATOM 1 O3' U B1897 120.340 112.105 81.022 1.00 41.73 O
ATOM 2 P C B1898 119.988 112.097 82.582 1.00 42.87 P
ATOM 3 OP1 C B1898 120.481 113.367 83.179 1.00 44.35 O
ATOM 4 OP2 C B1898 120.421 110.797 83.154 1.00 42.65 O
ATOM 5 O5' C B1898 118.399 112.135 82.611 1.00 44.86 O
ATOM 6 C5' C B1898 117.668 113.275 82.118 1.00 44.41 C
ATOM 7 C4' C B1898 116.513 113.572 83.040 1.00 44.66 C
ATOM 8 O4' C B1898 115.706 112.376 83.167 1.00 45.84 O
ATOM 9 C3' C B1898 116.917 113.934 84.461 1.00 44.07 C
ATOM 10 O3' C B1898 117.102 115.345 84.527 1.00 45.12 O
ATOM 11 C2' C B1898 115.720 113.472 85.284 1.00 43.24 C
ATOM 12 O2' C B1898 114.673 114.408 85.267 1.00 42.44 O
ATOM 13 C1' C B1898 115.258 112.240 84.500 1.00 45.04 C
ATOM 14 N1 C B1898 115.686 110.917 84.984 1.00 46.13 N
ATOM 15 C2 C B1898 114.750 109.883 84.993 1.00 48.48 C
ATOM 16 O2 C B1898 113.584 110.124 84.643 1.00 50.08 O
ATOM 17 N3 C B1898 115.132 108.646 85.387 1.00 49.06 N
ATOM 18 C4 C B1898 116.389 108.428 85.772 1.00 47.66 C
ATOM 19 N4 C B1898 116.718 107.194 86.141 1.00 48.84 N
ATOM 20 C5 C B1898 117.360 109.468 85.793 1.00 47.67 C
ATOM 21 C6 C B1898 116.970 110.687 85.396 1.00 47.75 C
ATOM 22 P A B1899 117.911 116.004 85.747 1.00 46.10 P
ATOM 23 OP1 A B1899 119.311 116.196 85.281 1.00 49.07 O
ATOM 24 OP2 A B1899 117.649 115.251 87.001 1.00 45.69 O
ATOM 25 O5' A B1899 117.240 117.438 85.895 1.00 44.94 O
TER
ATOM 2 P C A1852 119.993 103.389 86.950 1.00 54.32 P
ATOM 3 OP1 C A1852 120.383 101.992 86.619 1.00 53.28 O
ATOM 4 OP2 C A1852 121.000 104.479 86.832 1.00 52.76 O
ATOM 5 O5' C A1852 118.741 103.766 86.041 1.00 54.36 O
ATOM 6 C5' C A1852 117.578 102.925 86.014 1.00 53.27 C
ATOM 7 C4' C A1852 117.144 102.681 84.592 1.00 52.42 C
ATOM 8 O4' C A1852 116.606 103.905 84.023 1.00 52.60 O
ATOM 9 C3' C A1852 118.232 102.214 83.631 1.00 52.42 C
ATOM 10 O3' C A1852 117.631 101.369 82.667 1.00 55.07 O
ATOM 11 C2' C A1852 118.634 103.508 82.932 1.00 52.30 C
ATOM 12 O2' C A1852 119.200 103.288 81.652 1.00 49.60 O
ATOM 13 C1' C A1852 117.272 104.190 82.812 1.00 51.66 C
ATOM 14 N1 C A1852 117.252 105.648 82.598 1.00 50.46 N
ATOM 15 C2 C A1852 116.188 106.197 81.875 1.00 48.81 C
ATOM 16 O2 C A1852 115.313 105.439 81.420 1.00 46.97 O
ATOM 17 N3 C A1852 116.139 107.537 81.688 1.00 48.52 N
ATOM 18 C4 C A1852 117.098 108.317 82.190 1.00 47.90 C
ATOM 19 N4 C A1852 116.998 109.630 81.999 1.00 47.47 N
ATOM 20 C5 C A1852 118.199 107.785 82.916 1.00 48.94 C
ATOM 21 C6 C A1852 118.237 106.457 83.097 1.00 50.41 C
ATOM 22 P A A1853 117.846 99.787 82.753 1.00 55.68 P
ATOM 23 OP1 A A1853 118.965 99.515 83.700 1.00 53.05 O
ATOM 24 OP2 A A1853 117.920 99.294 81.348 1.00 53.15 O
ATOM 25 O5' A A1853 116.494 99.245 83.394 1.00 53.91 O
TER
ATOM 1 O3' U B1897 120.340 112.105 81.022 1.00 41.73 O
ATOM 2 P C B1898 119.988 112.097 82.582 1.00 42.87 P
ATOM 3 OP1 C B1898 120.481 113.367 83.179 1.00 44.35 O
ATOM 4 OP2 C B1898 120.421 110.797 83.154 1.00 42.65 O
ATOM 5 O5' C B1898 118.399 112.135 82.611 1.00 44.86 O
ATOM 6 C5' C B1898 117.668 113.275 82.118 1.00 44.41 C
ATOM 7 C4' C B1898 116.513 113.572 83.040 1.00 44.66 C
ATOM 8 O4' C B1898 115.706 112.376 83.167 1.00 45.84 O
ATOM 9 C3' C B1898 116.917 113.934 84.461 1.00 44.07 C
ATOM 10 O3' C B1898 117.102 115.345 84.527 1.00 45.12 O
ATOM 11 C2' C B1898 115.720 113.472 85.284 1.00 43.24 C
ATOM 12 O2' C B1898 114.673 114.408 85.267 1.00 42.44 O
ATOM 13 C1' C B1898 115.258 112.240 84.500 1.00 45.04 C
ATOM 14 N1 C B1898 115.686 110.917 84.984 1.00 46.13 N
ATOM 15 C2 C B1898 114.750 109.883 84.993 1.00 48.48 C
ATOM 16 O2 C B1898 113.584 110.124 84.643 1.00 50.08 O
ATOM 17 N3 C B1898 115.132 108.646 85.387 1.00 49.06 N
ATOM 18 C4 C B1898 116.389 108.428 85.772 1.00 47.66 C
ATOM 19 N4 C B1898 116.718 107.194 86.141 1.00 48.84 N
ATOM 20 C5 C B1898 117.360 109.468 85.793 1.00 47.67 C
ATOM 21 C6 C B1898 116.970 110.687 85.396 1.00 47.75 C
ATOM 22 P A B1899 117.911 116.004 85.747 1.00 46.10 P
ATOM 23 OP1 A B1899 119.311 116.196 85.281 1.00 49.07 O
ATOM 24 OP2 A B1899 117.649 115.251 87.001 1.00 45.69 O
ATOM 25 O5' A B1899 117.240 117.438 85.895 1.00 44.94 O
TER
Atoms:
C2: (116.188,106.197,81.875)
OP1: (120.383,101.992,86.619)
OP2: (121.000,104.479,86.832)
C4: (117.098,108.317,82.190)
O5': (118.741,103.766,86.041)
C3': (118.232,102.214,83.631)
C1': (117.272,104.190,82.812)
O4': (116.606,103.905,84.023)
C5': (117.578,102.925,86.014)
P: (119.993,103.389,86.950)
O2: (115.313,105.439,81.420)
C4': (117.144,102.681,84.592)
C2': (118.634,103.508,82.932)
O2': (119.200,103.288,81.652)
N1: (117.252,105.648,82.598)
N3: (116.139,107.537,81.688)
N4: (116.998,109.630,81.999)
C6: (118.237,106.457,83.097)
C5: (118.199,107.785,82.916)
O3': (117.631,101.369,82.667)
OP1: (120.383,101.992,86.619)
OP2: (121.000,104.479,86.832)
C4: (117.098,108.317,82.190)
O5': (118.741,103.766,86.041)
C3': (118.232,102.214,83.631)
C1': (117.272,104.190,82.812)
O4': (116.606,103.905,84.023)
C5': (117.578,102.925,86.014)
P: (119.993,103.389,86.950)
O2: (115.313,105.439,81.420)
C4': (117.144,102.681,84.592)
C2': (118.634,103.508,82.932)
O2': (119.200,103.288,81.652)
N1: (117.252,105.648,82.598)
N3: (116.139,107.537,81.688)
N4: (116.998,109.630,81.999)
C6: (118.237,106.457,83.097)
C5: (118.199,107.785,82.916)
O3': (117.631,101.369,82.667)
C2: (114.750,109.883,84.993)
OP1: (120.481,113.367,83.179)
OP2: (120.421,110.797,83.154)
C4: (116.389,108.428,85.772)
O5': (118.399,112.135,82.611)
C3': (116.917,113.934,84.461)
C1': (115.258,112.240,84.500)
O4': (115.706,112.376,83.167)
C5': (117.668,113.275,82.118)
P: (119.988,112.097,82.582)
O2: (113.584,110.124,84.643)
C4': (116.513,113.572,83.040)
C2': (115.720,113.472,85.284)
O2': (114.673,114.408,85.267)
N1: (115.686,110.917,84.984)
N3: (115.132,108.646,85.387)
N4: (116.718,107.194,86.141)
C6: (116.970,110.687,85.396)
C5: (117.360,109.468,85.793)
O3': (117.102,115.345,84.527)
OP1: (120.481,113.367,83.179)
OP2: (120.421,110.797,83.154)
C4: (116.389,108.428,85.772)
O5': (118.399,112.135,82.611)
C3': (116.917,113.934,84.461)
C1': (115.258,112.240,84.500)
O4': (115.706,112.376,83.167)
C5': (117.668,113.275,82.118)
P: (119.988,112.097,82.582)
O2: (113.584,110.124,84.643)
C4': (116.513,113.572,83.040)
C2': (115.720,113.472,85.284)
O2': (114.673,114.408,85.267)
N1: (115.686,110.917,84.984)
N3: (115.132,108.646,85.387)
N4: (116.718,107.194,86.141)
C6: (116.970,110.687,85.396)
C5: (117.360,109.468,85.793)
O3': (117.102,115.345,84.527)
Image (generated by PyMOL):