Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01852:01898
Extra
PDB:
ATOM 1 O3' C A1851 119.466 103.297 88.361 1.00 59.30 O
ATOM 2 P C A1852 120.025 103.311 86.855 1.00 61.29 P
ATOM 3 OP1 C A1852 120.352 101.908 86.496 1.00 61.61 O
ATOM 4 OP2 C A1852 121.069 104.362 86.733 1.00 60.76 O
ATOM 5 O5' C A1852 118.766 103.744 85.986 1.00 61.62 O
ATOM 6 C5' C A1852 117.598 102.911 85.936 1.00 61.68 C
ATOM 7 C4' C A1852 117.224 102.625 84.505 1.00 61.64 C
ATOM 8 O4' C A1852 116.658 103.817 83.900 1.00 61.38 O
ATOM 9 C3' C A1852 118.367 102.191 83.593 1.00 61.04 C
ATOM 10 O3' C A1852 117.835 101.328 82.600 1.00 62.94 O
ATOM 11 C2' C A1852 118.764 103.501 82.926 1.00 60.74 C
ATOM 12 O2' C A1852 119.398 103.311 81.676 1.00 60.54 O
ATOM 13 C1' C A1852 117.390 104.142 82.740 1.00 60.59 C
ATOM 14 N1 C A1852 117.344 105.602 82.557 1.00 59.62 N
ATOM 15 C2 C A1852 116.388 106.133 81.690 1.00 58.43 C
ATOM 16 O2 C A1852 115.612 105.360 81.098 1.00 56.42 O
ATOM 17 N3 C A1852 116.328 107.470 81.518 1.00 57.91 N
ATOM 18 C4 C A1852 117.170 108.265 82.174 1.00 57.84 C
ATOM 19 N4 C A1852 117.064 109.574 81.987 1.00 59.18 N
ATOM 20 C5 C A1852 118.156 107.753 83.056 1.00 59.28 C
ATOM 21 C6 C A1852 118.208 106.428 83.220 1.00 59.97 C
ATOM 22 P A A1853 118.006 99.744 82.745 1.00 63.59 P
ATOM 23 OP1 A A1853 119.066 99.481 83.755 1.00 64.11 O
ATOM 24 OP2 A A1853 118.139 99.190 81.370 1.00 63.24 O
ATOM 25 O5' A A1853 116.616 99.241 83.336 1.00 62.07 O
TER
ATOM 1 O3' U B1897 120.404 112.093 80.996 1.00 48.32 O
ATOM 2 P C B1898 120.093 112.075 82.564 1.00 48.94 P
ATOM 3 OP1 C B1898 120.652 113.309 83.173 1.00 49.69 O
ATOM 4 OP2 C B1898 120.492 110.751 83.089 1.00 49.10 O
ATOM 5 O5' C B1898 118.509 112.146 82.639 1.00 50.26 O
ATOM 6 C5' C B1898 117.787 113.280 82.142 1.00 50.46 C
ATOM 7 C4' C B1898 116.609 113.549 83.036 1.00 51.33 C
ATOM 8 O4' C B1898 115.817 112.342 83.133 1.00 50.98 O
ATOM 9 C3' C B1898 116.982 113.906 84.463 1.00 50.98 C
ATOM 10 O3' C B1898 117.109 115.324 84.524 1.00 51.92 O
ATOM 11 C2' C B1898 115.781 113.411 85.259 1.00 51.89 C
ATOM 12 O2' C B1898 114.723 114.341 85.241 1.00 53.52 O
ATOM 13 C1' C B1898 115.354 112.180 84.452 1.00 52.47 C
ATOM 14 N1 C B1898 115.815 110.866 84.924 1.00 54.84 N
ATOM 15 C2 C B1898 114.917 109.792 84.904 1.00 56.94 C
ATOM 16 O2 C B1898 113.762 109.976 84.494 1.00 57.72 O
ATOM 17 N3 C B1898 115.329 108.578 85.326 1.00 57.97 N
ATOM 18 C4 C B1898 116.581 108.411 85.749 1.00 57.95 C
ATOM 19 N4 C B1898 116.946 107.196 86.155 1.00 58.94 N
ATOM 20 C5 C B1898 117.516 109.483 85.776 1.00 57.52 C
ATOM 21 C6 C B1898 117.095 110.682 85.363 1.00 56.21 C
ATOM 22 P A B1899 118.031 116.012 85.638 1.00 51.98 P
ATOM 23 OP1 A B1899 119.387 116.182 85.065 1.00 53.48 O
ATOM 24 OP2 A B1899 117.857 115.289 86.919 1.00 50.91 O
ATOM 25 O5' A B1899 117.396 117.460 85.786 1.00 50.79 O
TER
ATOM 2 P C A1852 120.025 103.311 86.855 1.00 61.29 P
ATOM 3 OP1 C A1852 120.352 101.908 86.496 1.00 61.61 O
ATOM 4 OP2 C A1852 121.069 104.362 86.733 1.00 60.76 O
ATOM 5 O5' C A1852 118.766 103.744 85.986 1.00 61.62 O
ATOM 6 C5' C A1852 117.598 102.911 85.936 1.00 61.68 C
ATOM 7 C4' C A1852 117.224 102.625 84.505 1.00 61.64 C
ATOM 8 O4' C A1852 116.658 103.817 83.900 1.00 61.38 O
ATOM 9 C3' C A1852 118.367 102.191 83.593 1.00 61.04 C
ATOM 10 O3' C A1852 117.835 101.328 82.600 1.00 62.94 O
ATOM 11 C2' C A1852 118.764 103.501 82.926 1.00 60.74 C
ATOM 12 O2' C A1852 119.398 103.311 81.676 1.00 60.54 O
ATOM 13 C1' C A1852 117.390 104.142 82.740 1.00 60.59 C
ATOM 14 N1 C A1852 117.344 105.602 82.557 1.00 59.62 N
ATOM 15 C2 C A1852 116.388 106.133 81.690 1.00 58.43 C
ATOM 16 O2 C A1852 115.612 105.360 81.098 1.00 56.42 O
ATOM 17 N3 C A1852 116.328 107.470 81.518 1.00 57.91 N
ATOM 18 C4 C A1852 117.170 108.265 82.174 1.00 57.84 C
ATOM 19 N4 C A1852 117.064 109.574 81.987 1.00 59.18 N
ATOM 20 C5 C A1852 118.156 107.753 83.056 1.00 59.28 C
ATOM 21 C6 C A1852 118.208 106.428 83.220 1.00 59.97 C
ATOM 22 P A A1853 118.006 99.744 82.745 1.00 63.59 P
ATOM 23 OP1 A A1853 119.066 99.481 83.755 1.00 64.11 O
ATOM 24 OP2 A A1853 118.139 99.190 81.370 1.00 63.24 O
ATOM 25 O5' A A1853 116.616 99.241 83.336 1.00 62.07 O
TER
ATOM 1 O3' U B1897 120.404 112.093 80.996 1.00 48.32 O
ATOM 2 P C B1898 120.093 112.075 82.564 1.00 48.94 P
ATOM 3 OP1 C B1898 120.652 113.309 83.173 1.00 49.69 O
ATOM 4 OP2 C B1898 120.492 110.751 83.089 1.00 49.10 O
ATOM 5 O5' C B1898 118.509 112.146 82.639 1.00 50.26 O
ATOM 6 C5' C B1898 117.787 113.280 82.142 1.00 50.46 C
ATOM 7 C4' C B1898 116.609 113.549 83.036 1.00 51.33 C
ATOM 8 O4' C B1898 115.817 112.342 83.133 1.00 50.98 O
ATOM 9 C3' C B1898 116.982 113.906 84.463 1.00 50.98 C
ATOM 10 O3' C B1898 117.109 115.324 84.524 1.00 51.92 O
ATOM 11 C2' C B1898 115.781 113.411 85.259 1.00 51.89 C
ATOM 12 O2' C B1898 114.723 114.341 85.241 1.00 53.52 O
ATOM 13 C1' C B1898 115.354 112.180 84.452 1.00 52.47 C
ATOM 14 N1 C B1898 115.815 110.866 84.924 1.00 54.84 N
ATOM 15 C2 C B1898 114.917 109.792 84.904 1.00 56.94 C
ATOM 16 O2 C B1898 113.762 109.976 84.494 1.00 57.72 O
ATOM 17 N3 C B1898 115.329 108.578 85.326 1.00 57.97 N
ATOM 18 C4 C B1898 116.581 108.411 85.749 1.00 57.95 C
ATOM 19 N4 C B1898 116.946 107.196 86.155 1.00 58.94 N
ATOM 20 C5 C B1898 117.516 109.483 85.776 1.00 57.52 C
ATOM 21 C6 C B1898 117.095 110.682 85.363 1.00 56.21 C
ATOM 22 P A B1899 118.031 116.012 85.638 1.00 51.98 P
ATOM 23 OP1 A B1899 119.387 116.182 85.065 1.00 53.48 O
ATOM 24 OP2 A B1899 117.857 115.289 86.919 1.00 50.91 O
ATOM 25 O5' A B1899 117.396 117.460 85.786 1.00 50.79 O
TER
Atoms:
C2: (116.388,106.133,81.690)
OP1: (120.352,101.908,86.496)
OP2: (121.069,104.362,86.733)
C4: (117.170,108.265,82.174)
O5': (118.766,103.744,85.986)
C3': (118.367,102.191,83.593)
C1': (117.390,104.142,82.740)
O4': (116.658,103.817,83.900)
C5': (117.598,102.911,85.936)
P: (120.025,103.311,86.855)
O2: (115.612,105.360,81.098)
C4': (117.224,102.625,84.505)
C2': (118.764,103.501,82.926)
O2': (119.398,103.311,81.676)
N1: (117.344,105.602,82.557)
N3: (116.328,107.470,81.518)
N4: (117.064,109.574,81.987)
C6: (118.208,106.428,83.220)
C5: (118.156,107.753,83.056)
O3': (117.835,101.328,82.600)
OP1: (120.352,101.908,86.496)
OP2: (121.069,104.362,86.733)
C4: (117.170,108.265,82.174)
O5': (118.766,103.744,85.986)
C3': (118.367,102.191,83.593)
C1': (117.390,104.142,82.740)
O4': (116.658,103.817,83.900)
C5': (117.598,102.911,85.936)
P: (120.025,103.311,86.855)
O2: (115.612,105.360,81.098)
C4': (117.224,102.625,84.505)
C2': (118.764,103.501,82.926)
O2': (119.398,103.311,81.676)
N1: (117.344,105.602,82.557)
N3: (116.328,107.470,81.518)
N4: (117.064,109.574,81.987)
C6: (118.208,106.428,83.220)
C5: (118.156,107.753,83.056)
O3': (117.835,101.328,82.600)
C2: (114.917,109.792,84.904)
OP1: (120.652,113.309,83.173)
OP2: (120.492,110.751,83.089)
C4: (116.581,108.411,85.749)
O5': (118.509,112.146,82.639)
C3': (116.982,113.906,84.463)
C1': (115.354,112.180,84.452)
O4': (115.817,112.342,83.133)
C5': (117.787,113.280,82.142)
P: (120.093,112.075,82.564)
O2: (113.762,109.976,84.494)
C4': (116.609,113.549,83.036)
C2': (115.781,113.411,85.259)
O2': (114.723,114.341,85.241)
N1: (115.815,110.866,84.924)
N3: (115.329,108.578,85.326)
N4: (116.946,107.196,86.155)
C6: (117.095,110.682,85.363)
C5: (117.516,109.483,85.776)
O3': (117.109,115.324,84.524)
OP1: (120.652,113.309,83.173)
OP2: (120.492,110.751,83.089)
C4: (116.581,108.411,85.749)
O5': (118.509,112.146,82.639)
C3': (116.982,113.906,84.463)
C1': (115.354,112.180,84.452)
O4': (115.817,112.342,83.133)
C5': (117.787,113.280,82.142)
P: (120.093,112.075,82.564)
O2: (113.762,109.976,84.494)
C4': (116.609,113.549,83.036)
C2': (115.781,113.411,85.259)
O2': (114.723,114.341,85.241)
N1: (115.815,110.866,84.924)
N3: (115.329,108.578,85.326)
N4: (116.946,107.196,86.155)
C6: (117.095,110.682,85.363)
C5: (117.516,109.483,85.776)
O3': (117.109,115.324,84.524)
Image (generated by PyMOL):