Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02078:02107
Extra
PDB:
ATOM 1 O3' G A2077 107.445 105.735 33.772 1.00 64.78 O
ATOM 2 P C A2078 108.894 106.117 33.176 1.00 65.29 P
ATOM 3 OP1 C A2078 108.807 105.915 31.704 1.00 65.38 O
ATOM 4 OP2 C A2078 109.923 105.389 33.965 1.00 63.40 O
ATOM 5 O5' C A2078 109.043 107.677 33.462 1.00 63.03 O
ATOM 6 C5' C A2078 108.102 108.612 32.907 1.00 62.01 C
ATOM 7 C4' C A2078 108.249 109.965 33.559 1.00 61.41 C
ATOM 8 O4' C A2078 107.938 109.875 34.970 1.00 60.20 O
ATOM 9 C3' C A2078 109.634 110.588 33.525 1.00 62.68 C
ATOM 10 O3' C A2078 109.833 111.209 32.265 1.00 64.49 O
ATOM 11 C2' C A2078 109.544 111.605 34.658 1.00 61.53 C
ATOM 12 O2' C A2078 108.848 112.779 34.287 1.00 63.20 O
ATOM 13 C1' C A2078 108.692 110.845 35.679 1.00 59.08 C
ATOM 14 N1 C A2078 109.458 110.170 36.743 1.00 57.02 N
ATOM 15 C2 C A2078 109.767 110.891 37.907 1.00 57.84 C
ATOM 16 O2 C A2078 109.407 112.087 37.996 1.00 59.87 O
ATOM 17 N3 C A2078 110.445 110.271 38.905 1.00 56.21 N
ATOM 18 C4 C A2078 110.806 108.992 38.774 1.00 54.40 C
ATOM 19 N4 C A2078 111.457 108.421 39.790 1.00 54.62 N
ATOM 20 C5 C A2078 110.515 108.243 37.598 1.00 52.98 C
ATOM 21 C6 C A2078 109.851 108.864 36.617 1.00 54.47 C
ATOM 22 P U A2079 111.293 111.249 31.583 1.00 66.72 P
ATOM 23 OP1 U A2079 111.911 112.546 31.963 1.00 66.28 O
ATOM 24 OP2 U A2079 111.123 110.905 30.136 1.00 63.98 O
ATOM 25 O5' U A2079 112.154 110.075 32.227 1.00 65.20 O
TER
ATOM 1 O3' A B2106 112.872 114.146 47.999 1.00 64.29 O
ATOM 2 P C B2107 111.305 113.783 48.011 1.00 64.89 P
ATOM 3 OP1 C B2107 110.813 113.991 49.394 1.00 65.54 O
ATOM 4 OP2 C B2107 111.106 112.464 47.347 1.00 62.88 O
ATOM 5 O5' C B2107 110.653 114.902 47.090 1.00 60.90 O
ATOM 6 C5' C B2107 110.772 116.290 47.429 1.00 57.49 C
ATOM 7 C4' C B2107 110.273 117.132 46.288 1.00 55.31 C
ATOM 8 O4' C B2107 111.094 116.874 45.123 1.00 55.01 O
ATOM 9 C3' C B2107 108.868 116.784 45.835 1.00 54.38 C
ATOM 10 O3' C B2107 107.896 117.455 46.628 1.00 53.59 O
ATOM 11 C2' C B2107 108.867 117.259 44.392 1.00 53.54 C
ATOM 12 O2' C B2107 108.667 118.652 44.295 1.00 54.10 O
ATOM 13 C1' C B2107 110.292 116.910 43.957 1.00 52.84 C
ATOM 14 N1 C B2107 110.413 115.618 43.251 1.00 50.96 N
ATOM 15 C2 C B2107 110.053 115.559 41.899 1.00 51.42 C
ATOM 16 O2 C B2107 109.667 116.595 41.333 1.00 51.38 O
ATOM 17 N3 C B2107 110.138 114.381 41.240 1.00 51.42 N
ATOM 18 C4 C B2107 110.571 113.292 41.876 1.00 51.51 C
ATOM 19 N4 C B2107 110.637 112.149 41.180 1.00 51.88 N
ATOM 20 C5 C B2107 110.956 113.324 43.251 1.00 50.13 C
ATOM 21 C6 C B2107 110.860 114.496 43.894 1.00 49.66 C
ATOM 22 P C B2108 106.695 116.626 47.295 1.00 51.07 P
ATOM 23 OP1 C B2108 105.974 117.585 48.161 1.00 49.91 O
ATOM 24 OP2 C B2108 107.260 115.387 47.884 1.00 50.60 O
ATOM 25 O5' C B2108 105.752 116.252 46.066 1.00 49.88 O
TER
ATOM 2 P C A2078 108.894 106.117 33.176 1.00 65.29 P
ATOM 3 OP1 C A2078 108.807 105.915 31.704 1.00 65.38 O
ATOM 4 OP2 C A2078 109.923 105.389 33.965 1.00 63.40 O
ATOM 5 O5' C A2078 109.043 107.677 33.462 1.00 63.03 O
ATOM 6 C5' C A2078 108.102 108.612 32.907 1.00 62.01 C
ATOM 7 C4' C A2078 108.249 109.965 33.559 1.00 61.41 C
ATOM 8 O4' C A2078 107.938 109.875 34.970 1.00 60.20 O
ATOM 9 C3' C A2078 109.634 110.588 33.525 1.00 62.68 C
ATOM 10 O3' C A2078 109.833 111.209 32.265 1.00 64.49 O
ATOM 11 C2' C A2078 109.544 111.605 34.658 1.00 61.53 C
ATOM 12 O2' C A2078 108.848 112.779 34.287 1.00 63.20 O
ATOM 13 C1' C A2078 108.692 110.845 35.679 1.00 59.08 C
ATOM 14 N1 C A2078 109.458 110.170 36.743 1.00 57.02 N
ATOM 15 C2 C A2078 109.767 110.891 37.907 1.00 57.84 C
ATOM 16 O2 C A2078 109.407 112.087 37.996 1.00 59.87 O
ATOM 17 N3 C A2078 110.445 110.271 38.905 1.00 56.21 N
ATOM 18 C4 C A2078 110.806 108.992 38.774 1.00 54.40 C
ATOM 19 N4 C A2078 111.457 108.421 39.790 1.00 54.62 N
ATOM 20 C5 C A2078 110.515 108.243 37.598 1.00 52.98 C
ATOM 21 C6 C A2078 109.851 108.864 36.617 1.00 54.47 C
ATOM 22 P U A2079 111.293 111.249 31.583 1.00 66.72 P
ATOM 23 OP1 U A2079 111.911 112.546 31.963 1.00 66.28 O
ATOM 24 OP2 U A2079 111.123 110.905 30.136 1.00 63.98 O
ATOM 25 O5' U A2079 112.154 110.075 32.227 1.00 65.20 O
TER
ATOM 1 O3' A B2106 112.872 114.146 47.999 1.00 64.29 O
ATOM 2 P C B2107 111.305 113.783 48.011 1.00 64.89 P
ATOM 3 OP1 C B2107 110.813 113.991 49.394 1.00 65.54 O
ATOM 4 OP2 C B2107 111.106 112.464 47.347 1.00 62.88 O
ATOM 5 O5' C B2107 110.653 114.902 47.090 1.00 60.90 O
ATOM 6 C5' C B2107 110.772 116.290 47.429 1.00 57.49 C
ATOM 7 C4' C B2107 110.273 117.132 46.288 1.00 55.31 C
ATOM 8 O4' C B2107 111.094 116.874 45.123 1.00 55.01 O
ATOM 9 C3' C B2107 108.868 116.784 45.835 1.00 54.38 C
ATOM 10 O3' C B2107 107.896 117.455 46.628 1.00 53.59 O
ATOM 11 C2' C B2107 108.867 117.259 44.392 1.00 53.54 C
ATOM 12 O2' C B2107 108.667 118.652 44.295 1.00 54.10 O
ATOM 13 C1' C B2107 110.292 116.910 43.957 1.00 52.84 C
ATOM 14 N1 C B2107 110.413 115.618 43.251 1.00 50.96 N
ATOM 15 C2 C B2107 110.053 115.559 41.899 1.00 51.42 C
ATOM 16 O2 C B2107 109.667 116.595 41.333 1.00 51.38 O
ATOM 17 N3 C B2107 110.138 114.381 41.240 1.00 51.42 N
ATOM 18 C4 C B2107 110.571 113.292 41.876 1.00 51.51 C
ATOM 19 N4 C B2107 110.637 112.149 41.180 1.00 51.88 N
ATOM 20 C5 C B2107 110.956 113.324 43.251 1.00 50.13 C
ATOM 21 C6 C B2107 110.860 114.496 43.894 1.00 49.66 C
ATOM 22 P C B2108 106.695 116.626 47.295 1.00 51.07 P
ATOM 23 OP1 C B2108 105.974 117.585 48.161 1.00 49.91 O
ATOM 24 OP2 C B2108 107.260 115.387 47.884 1.00 50.60 O
ATOM 25 O5' C B2108 105.752 116.252 46.066 1.00 49.88 O
TER
Atoms:
C2: (109.767,110.891,37.907)
OP1: (108.807,105.915,31.704)
OP2: (109.923,105.389,33.965)
C4: (110.806,108.992,38.774)
O5': (109.043,107.677,33.462)
C3': (109.634,110.588,33.525)
C1': (108.692,110.845,35.679)
O4': (107.938,109.875,34.970)
C5': (108.102,108.612,32.907)
P: (108.894,106.117,33.176)
O2: (109.407,112.087,37.996)
C4': (108.249,109.965,33.559)
C2': (109.544,111.605,34.658)
O2': (108.848,112.779,34.287)
N1: (109.458,110.170,36.743)
N3: (110.445,110.271,38.905)
N4: (111.457,108.421,39.790)
C6: (109.851,108.864,36.617)
C5: (110.515,108.243,37.598)
O3': (109.833,111.209,32.265)
OP1: (108.807,105.915,31.704)
OP2: (109.923,105.389,33.965)
C4: (110.806,108.992,38.774)
O5': (109.043,107.677,33.462)
C3': (109.634,110.588,33.525)
C1': (108.692,110.845,35.679)
O4': (107.938,109.875,34.970)
C5': (108.102,108.612,32.907)
P: (108.894,106.117,33.176)
O2: (109.407,112.087,37.996)
C4': (108.249,109.965,33.559)
C2': (109.544,111.605,34.658)
O2': (108.848,112.779,34.287)
N1: (109.458,110.170,36.743)
N3: (110.445,110.271,38.905)
N4: (111.457,108.421,39.790)
C6: (109.851,108.864,36.617)
C5: (110.515,108.243,37.598)
O3': (109.833,111.209,32.265)
C2: (110.053,115.559,41.899)
OP1: (110.813,113.991,49.394)
OP2: (111.106,112.464,47.347)
C4: (110.571,113.292,41.876)
O5': (110.653,114.902,47.090)
C3': (108.868,116.784,45.835)
C1': (110.292,116.910,43.957)
O4': (111.094,116.874,45.123)
C5': (110.772,116.290,47.429)
P: (111.305,113.783,48.011)
O2: (109.667,116.595,41.333)
C4': (110.273,117.132,46.288)
C2': (108.867,117.259,44.392)
O2': (108.667,118.652,44.295)
N1: (110.413,115.618,43.251)
N3: (110.138,114.381,41.240)
N4: (110.637,112.149,41.180)
C6: (110.860,114.496,43.894)
C5: (110.956,113.324,43.251)
O3': (107.896,117.455,46.628)
OP1: (110.813,113.991,49.394)
OP2: (111.106,112.464,47.347)
C4: (110.571,113.292,41.876)
O5': (110.653,114.902,47.090)
C3': (108.868,116.784,45.835)
C1': (110.292,116.910,43.957)
O4': (111.094,116.874,45.123)
C5': (110.772,116.290,47.429)
P: (111.305,113.783,48.011)
O2: (109.667,116.595,41.333)
C4': (110.273,117.132,46.288)
C2': (108.867,117.259,44.392)
O2': (108.667,118.652,44.295)
N1: (110.413,115.618,43.251)
N3: (110.138,114.381,41.240)
N4: (110.637,112.149,41.180)
C6: (110.860,114.496,43.894)
C5: (110.956,113.324,43.251)
O3': (107.896,117.455,46.628)
Image (generated by PyMOL):