Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1234:A1240
Extra
PDB:
ATOM 1 O3' A A1233 5.243 79.922 68.379 1.00 57.70 O
ATOM 2 P C A1234 5.597 80.060 66.832 1.00 58.82 P
ATOM 3 OP1 C A1234 4.976 78.871 66.212 1.00 58.80 O
ATOM 4 OP2 C A1234 7.064 80.289 66.668 1.00 59.14 O
ATOM 5 O5' C A1234 4.800 81.378 66.415 1.00 58.02 O
ATOM 6 C5' C A1234 3.357 81.380 66.403 1.00 58.96 C
ATOM 7 C4' C A1234 2.816 82.753 66.073 1.00 60.24 C
ATOM 8 O4' C A1234 3.115 83.696 67.126 1.00 60.27 O
ATOM 9 C3' C A1234 3.394 83.410 64.840 1.00 60.82 C
ATOM 10 O3' C A1234 2.816 82.909 63.671 1.00 62.50 O
ATOM 11 C2' C A1234 3.057 84.873 65.053 1.00 60.91 C
ATOM 12 O2' C A1234 1.752 85.246 64.672 1.00 61.29 O
ATOM 13 C1' C A1234 3.271 84.991 66.559 1.00 61.73 C
ATOM 14 N1 C A1234 4.639 85.447 66.811 1.00 63.19 N
ATOM 15 C2 C A1234 4.871 86.817 66.884 1.00 62.92 C
ATOM 16 O2 C A1234 3.910 87.588 66.727 1.00 63.25 O
ATOM 17 N3 C A1234 6.122 87.265 67.116 1.00 62.86 N
ATOM 18 C4 C A1234 7.119 86.391 67.276 1.00 64.24 C
ATOM 19 N4 C A1234 8.339 86.862 67.536 1.00 64.64 N
ATOM 20 C5 C A1234 6.910 84.984 67.189 1.00 64.49 C
ATOM 21 C6 C A1234 5.667 84.559 66.961 1.00 64.15 C
ATOM 22 P U A1235 3.730 82.692 62.397 1.00 63.76 P
ATOM 23 OP1 U A1235 2.795 82.168 61.375 1.00 65.67 O
ATOM 24 OP2 U A1235 4.891 81.873 62.832 1.00 62.52 O
ATOM 25 O5' U A1235 4.209 84.170 62.042 1.00 62.87 O
TER
ATOM 1 O3' A B1239 8.106 98.636 66.731 1.00 94.01 O
ATOM 2 P C B1240 7.472 98.362 68.192 1.00 93.94 P
ATOM 3 OP1 C B1240 7.468 99.616 68.985 1.00 94.76 O
ATOM 4 OP2 C B1240 8.062 97.129 68.777 1.00 93.61 O
ATOM 5 O5' C B1240 5.947 98.043 67.894 1.00 91.91 O
ATOM 6 C5' C B1240 5.131 97.464 68.902 1.00 88.83 C
ATOM 7 C4' C B1240 3.812 97.057 68.325 1.00 86.86 C
ATOM 8 O4' C B1240 4.008 96.171 67.197 1.00 85.81 O
ATOM 9 C3' C B1240 2.999 96.244 69.296 1.00 86.02 C
ATOM 10 O3' C B1240 2.349 97.107 70.191 1.00 84.48 O
ATOM 11 C2' C B1240 2.076 95.450 68.389 1.00 86.22 C
ATOM 12 O2' C B1240 0.949 96.193 67.950 1.00 86.40 O
ATOM 13 C1' C B1240 3.020 95.149 67.219 1.00 86.08 C
ATOM 14 N1 C B1240 3.709 93.845 67.310 1.00 84.90 N
ATOM 15 C2 C B1240 2.962 92.660 67.173 1.00 84.45 C
ATOM 16 O2 C B1240 1.727 92.730 67.013 1.00 83.93 O
ATOM 17 N3 C B1240 3.606 91.470 67.221 1.00 84.55 N
ATOM 18 C4 C B1240 4.931 91.430 67.405 1.00 84.77 C
ATOM 19 N4 C B1240 5.527 90.233 67.442 1.00 85.10 N
ATOM 20 C5 C B1240 5.706 92.613 67.560 1.00 84.62 C
ATOM 21 C6 C B1240 5.061 93.786 67.508 1.00 84.64 C
ATOM 22 P U B1241 2.508 96.845 71.751 1.00 84.02 P
ATOM 23 OP1 U B1241 1.661 97.872 72.407 1.00 84.79 O
ATOM 24 OP2 U B1241 3.965 96.789 72.058 1.00 82.35 O
ATOM 25 O5' U B1241 1.826 95.405 71.921 1.00 82.10 O
TER
ATOM 2 P C A1234 5.597 80.060 66.832 1.00 58.82 P
ATOM 3 OP1 C A1234 4.976 78.871 66.212 1.00 58.80 O
ATOM 4 OP2 C A1234 7.064 80.289 66.668 1.00 59.14 O
ATOM 5 O5' C A1234 4.800 81.378 66.415 1.00 58.02 O
ATOM 6 C5' C A1234 3.357 81.380 66.403 1.00 58.96 C
ATOM 7 C4' C A1234 2.816 82.753 66.073 1.00 60.24 C
ATOM 8 O4' C A1234 3.115 83.696 67.126 1.00 60.27 O
ATOM 9 C3' C A1234 3.394 83.410 64.840 1.00 60.82 C
ATOM 10 O3' C A1234 2.816 82.909 63.671 1.00 62.50 O
ATOM 11 C2' C A1234 3.057 84.873 65.053 1.00 60.91 C
ATOM 12 O2' C A1234 1.752 85.246 64.672 1.00 61.29 O
ATOM 13 C1' C A1234 3.271 84.991 66.559 1.00 61.73 C
ATOM 14 N1 C A1234 4.639 85.447 66.811 1.00 63.19 N
ATOM 15 C2 C A1234 4.871 86.817 66.884 1.00 62.92 C
ATOM 16 O2 C A1234 3.910 87.588 66.727 1.00 63.25 O
ATOM 17 N3 C A1234 6.122 87.265 67.116 1.00 62.86 N
ATOM 18 C4 C A1234 7.119 86.391 67.276 1.00 64.24 C
ATOM 19 N4 C A1234 8.339 86.862 67.536 1.00 64.64 N
ATOM 20 C5 C A1234 6.910 84.984 67.189 1.00 64.49 C
ATOM 21 C6 C A1234 5.667 84.559 66.961 1.00 64.15 C
ATOM 22 P U A1235 3.730 82.692 62.397 1.00 63.76 P
ATOM 23 OP1 U A1235 2.795 82.168 61.375 1.00 65.67 O
ATOM 24 OP2 U A1235 4.891 81.873 62.832 1.00 62.52 O
ATOM 25 O5' U A1235 4.209 84.170 62.042 1.00 62.87 O
TER
ATOM 1 O3' A B1239 8.106 98.636 66.731 1.00 94.01 O
ATOM 2 P C B1240 7.472 98.362 68.192 1.00 93.94 P
ATOM 3 OP1 C B1240 7.468 99.616 68.985 1.00 94.76 O
ATOM 4 OP2 C B1240 8.062 97.129 68.777 1.00 93.61 O
ATOM 5 O5' C B1240 5.947 98.043 67.894 1.00 91.91 O
ATOM 6 C5' C B1240 5.131 97.464 68.902 1.00 88.83 C
ATOM 7 C4' C B1240 3.812 97.057 68.325 1.00 86.86 C
ATOM 8 O4' C B1240 4.008 96.171 67.197 1.00 85.81 O
ATOM 9 C3' C B1240 2.999 96.244 69.296 1.00 86.02 C
ATOM 10 O3' C B1240 2.349 97.107 70.191 1.00 84.48 O
ATOM 11 C2' C B1240 2.076 95.450 68.389 1.00 86.22 C
ATOM 12 O2' C B1240 0.949 96.193 67.950 1.00 86.40 O
ATOM 13 C1' C B1240 3.020 95.149 67.219 1.00 86.08 C
ATOM 14 N1 C B1240 3.709 93.845 67.310 1.00 84.90 N
ATOM 15 C2 C B1240 2.962 92.660 67.173 1.00 84.45 C
ATOM 16 O2 C B1240 1.727 92.730 67.013 1.00 83.93 O
ATOM 17 N3 C B1240 3.606 91.470 67.221 1.00 84.55 N
ATOM 18 C4 C B1240 4.931 91.430 67.405 1.00 84.77 C
ATOM 19 N4 C B1240 5.527 90.233 67.442 1.00 85.10 N
ATOM 20 C5 C B1240 5.706 92.613 67.560 1.00 84.62 C
ATOM 21 C6 C B1240 5.061 93.786 67.508 1.00 84.64 C
ATOM 22 P U B1241 2.508 96.845 71.751 1.00 84.02 P
ATOM 23 OP1 U B1241 1.661 97.872 72.407 1.00 84.79 O
ATOM 24 OP2 U B1241 3.965 96.789 72.058 1.00 82.35 O
ATOM 25 O5' U B1241 1.826 95.405 71.921 1.00 82.10 O
TER
Atoms:
C2: (4.871,86.817,66.884)
OP1: (4.976,78.871,66.212)
OP2: (7.064,80.289,66.668)
C4: (7.119,86.391,67.276)
O5': (4.800,81.378,66.415)
C3': (3.394,83.410,64.840)
C1': (3.271,84.991,66.559)
O4': (3.115,83.696,67.126)
C5': (3.357,81.380,66.403)
P: (5.597,80.060,66.832)
O2: (3.910,87.588,66.727)
C4': (2.816,82.753,66.073)
C2': (3.057,84.873,65.053)
O2': (1.752,85.246,64.672)
N1: (4.639,85.447,66.811)
N3: (6.122,87.265,67.116)
N4: (8.339,86.862,67.536)
C6: (5.667,84.559,66.961)
C5: (6.910,84.984,67.189)
O3': (2.816,82.909,63.671)
OP1: (4.976,78.871,66.212)
OP2: (7.064,80.289,66.668)
C4: (7.119,86.391,67.276)
O5': (4.800,81.378,66.415)
C3': (3.394,83.410,64.840)
C1': (3.271,84.991,66.559)
O4': (3.115,83.696,67.126)
C5': (3.357,81.380,66.403)
P: (5.597,80.060,66.832)
O2: (3.910,87.588,66.727)
C4': (2.816,82.753,66.073)
C2': (3.057,84.873,65.053)
O2': (1.752,85.246,64.672)
N1: (4.639,85.447,66.811)
N3: (6.122,87.265,67.116)
N4: (8.339,86.862,67.536)
C6: (5.667,84.559,66.961)
C5: (6.910,84.984,67.189)
O3': (2.816,82.909,63.671)
C2: (2.962,92.660,67.173)
OP1: (7.468,99.616,68.985)
OP2: (8.062,97.129,68.777)
C4: (4.931,91.430,67.405)
O5': (5.947,98.043,67.894)
C3': (2.999,96.244,69.296)
C1': (3.020,95.149,67.219)
O4': (4.008,96.171,67.197)
C5': (5.131,97.464,68.902)
P: (7.472,98.362,68.192)
O2: (1.727,92.730,67.013)
C4': (3.812,97.057,68.325)
C2': (2.076,95.450,68.389)
O2': (0.949,96.193,67.950)
N1: (3.709,93.845,67.310)
N3: (3.606,91.470,67.221)
N4: (5.527,90.233,67.442)
C6: (5.061,93.786,67.508)
C5: (5.706,92.613,67.560)
O3': (2.349,97.107,70.191)
OP1: (7.468,99.616,68.985)
OP2: (8.062,97.129,68.777)
C4: (4.931,91.430,67.405)
O5': (5.947,98.043,67.894)
C3': (2.999,96.244,69.296)
C1': (3.020,95.149,67.219)
O4': (4.008,96.171,67.197)
C5': (5.131,97.464,68.902)
P: (7.472,98.362,68.192)
O2: (1.727,92.730,67.013)
C4': (3.812,97.057,68.325)
C2': (2.076,95.450,68.389)
O2': (0.949,96.193,67.950)
N1: (3.709,93.845,67.310)
N3: (3.606,91.470,67.221)
N4: (5.527,90.233,67.442)
C6: (5.061,93.786,67.508)
C5: (5.706,92.613,67.560)
O3': (2.349,97.107,70.191)
Image (generated by PyMOL):