Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.296 99.113 121.939 1.00 70.54 O
ATOM 2 P C A 559 -4.848 98.175 123.118 1.00 72.54 P
ATOM 3 OP1 C A 559 -4.243 98.670 124.383 1.00 73.45 O
ATOM 4 OP2 C A 559 -4.676 96.746 122.730 1.00 70.72 O
ATOM 5 O5' C A 559 -6.405 98.499 123.141 1.00 72.37 O
ATOM 6 C5' C A 559 -6.886 99.820 123.454 1.00 73.90 C
ATOM 7 C4' C A 559 -8.390 99.835 123.419 1.00 75.05 C
ATOM 8 O4' C A 559 -8.824 99.526 122.067 1.00 74.54 O
ATOM 9 C3' C A 559 -9.028 98.754 124.277 1.00 76.99 C
ATOM 10 O3' C A 559 -9.153 99.141 125.640 1.00 79.51 O
ATOM 11 C2' C A 559 -10.358 98.519 123.576 1.00 75.96 C
ATOM 12 O2' C A 559 -11.324 99.506 123.887 1.00 76.07 O
ATOM 13 C1' C A 559 -9.936 98.644 122.109 1.00 74.22 C
ATOM 14 N1 C A 559 -9.524 97.358 121.510 1.00 71.93 N
ATOM 15 C2 C A 559 -10.491 96.554 120.893 1.00 71.75 C
ATOM 16 O2 C A 559 -11.667 96.948 120.851 1.00 71.98 O
ATOM 17 N3 C A 559 -10.117 95.369 120.353 1.00 71.44 N
ATOM 18 C4 C A 559 -8.838 94.984 120.405 1.00 70.39 C
ATOM 19 N4 C A 559 -8.512 93.811 119.854 1.00 69.14 N
ATOM 20 C5 C A 559 -7.836 95.784 121.023 1.00 70.48 C
ATOM 21 C6 C A 559 -8.218 96.950 121.557 1.00 70.99 C
ATOM 22 P G A 560 -8.986 98.037 126.794 1.00 81.73 P
ATOM 23 OP1 G A 560 -9.364 98.675 128.077 1.00 82.38 O
ATOM 24 OP2 G A 560 -7.647 97.412 126.652 1.00 81.82 O
ATOM 25 O5' G A 560 -10.102 96.954 126.450 1.00 82.89 O
TER
ATOM 1 O3' C B 573 -10.870 84.507 116.456 1.00 63.28 O
ATOM 2 P C B 574 -10.839 85.310 115.065 1.00 63.56 P
ATOM 3 OP1 C B 574 -11.801 84.661 114.137 1.00 63.23 O
ATOM 4 OP2 C B 574 -9.421 85.460 114.660 1.00 65.36 O
ATOM 5 O5' C B 574 -11.418 86.743 115.435 1.00 62.51 O
ATOM 6 C5' C B 574 -12.786 86.895 115.830 1.00 63.67 C
ATOM 7 C4' C B 574 -13.014 88.276 116.372 1.00 65.05 C
ATOM 8 O4' C B 574 -12.136 88.492 117.503 1.00 65.31 O
ATOM 9 C3' C B 574 -12.675 89.399 115.413 1.00 66.23 C
ATOM 10 O3' C B 574 -13.771 89.649 114.541 1.00 68.33 O
ATOM 11 C2' C B 574 -12.393 90.566 116.352 1.00 66.42 C
ATOM 12 O2' C B 574 -13.572 91.219 116.793 1.00 64.80 O
ATOM 13 C1' C B 574 -11.718 89.850 117.529 1.00 66.03 C
ATOM 14 N1 C B 574 -10.236 89.891 117.550 1.00 65.69 N
ATOM 15 C2 C B 574 -9.588 91.009 118.122 1.00 64.39 C
ATOM 16 O2 C B 574 -10.270 91.947 118.569 1.00 62.28 O
ATOM 17 N3 C B 574 -8.234 91.032 118.165 1.00 64.07 N
ATOM 18 C4 C B 574 -7.529 90.013 117.662 1.00 64.06 C
ATOM 19 N4 C B 574 -6.201 90.083 117.727 1.00 64.10 N
ATOM 20 C5 C B 574 -8.157 88.877 117.070 1.00 64.22 C
ATOM 21 C6 C B 574 -9.497 88.858 117.034 1.00 65.56 C
ATOM 22 P A B 575 -13.502 90.224 113.069 1.00 69.26 P
ATOM 23 OP1 A B 575 -13.035 91.632 113.210 1.00 69.03 O
ATOM 24 OP2 A B 575 -14.697 89.927 112.238 1.00 67.71 O
ATOM 25 O5' A B 575 -12.302 89.329 112.526 1.00 68.86 O
TER
ATOM 2 P C A 559 -4.848 98.175 123.118 1.00 72.54 P
ATOM 3 OP1 C A 559 -4.243 98.670 124.383 1.00 73.45 O
ATOM 4 OP2 C A 559 -4.676 96.746 122.730 1.00 70.72 O
ATOM 5 O5' C A 559 -6.405 98.499 123.141 1.00 72.37 O
ATOM 6 C5' C A 559 -6.886 99.820 123.454 1.00 73.90 C
ATOM 7 C4' C A 559 -8.390 99.835 123.419 1.00 75.05 C
ATOM 8 O4' C A 559 -8.824 99.526 122.067 1.00 74.54 O
ATOM 9 C3' C A 559 -9.028 98.754 124.277 1.00 76.99 C
ATOM 10 O3' C A 559 -9.153 99.141 125.640 1.00 79.51 O
ATOM 11 C2' C A 559 -10.358 98.519 123.576 1.00 75.96 C
ATOM 12 O2' C A 559 -11.324 99.506 123.887 1.00 76.07 O
ATOM 13 C1' C A 559 -9.936 98.644 122.109 1.00 74.22 C
ATOM 14 N1 C A 559 -9.524 97.358 121.510 1.00 71.93 N
ATOM 15 C2 C A 559 -10.491 96.554 120.893 1.00 71.75 C
ATOM 16 O2 C A 559 -11.667 96.948 120.851 1.00 71.98 O
ATOM 17 N3 C A 559 -10.117 95.369 120.353 1.00 71.44 N
ATOM 18 C4 C A 559 -8.838 94.984 120.405 1.00 70.39 C
ATOM 19 N4 C A 559 -8.512 93.811 119.854 1.00 69.14 N
ATOM 20 C5 C A 559 -7.836 95.784 121.023 1.00 70.48 C
ATOM 21 C6 C A 559 -8.218 96.950 121.557 1.00 70.99 C
ATOM 22 P G A 560 -8.986 98.037 126.794 1.00 81.73 P
ATOM 23 OP1 G A 560 -9.364 98.675 128.077 1.00 82.38 O
ATOM 24 OP2 G A 560 -7.647 97.412 126.652 1.00 81.82 O
ATOM 25 O5' G A 560 -10.102 96.954 126.450 1.00 82.89 O
TER
ATOM 1 O3' C B 573 -10.870 84.507 116.456 1.00 63.28 O
ATOM 2 P C B 574 -10.839 85.310 115.065 1.00 63.56 P
ATOM 3 OP1 C B 574 -11.801 84.661 114.137 1.00 63.23 O
ATOM 4 OP2 C B 574 -9.421 85.460 114.660 1.00 65.36 O
ATOM 5 O5' C B 574 -11.418 86.743 115.435 1.00 62.51 O
ATOM 6 C5' C B 574 -12.786 86.895 115.830 1.00 63.67 C
ATOM 7 C4' C B 574 -13.014 88.276 116.372 1.00 65.05 C
ATOM 8 O4' C B 574 -12.136 88.492 117.503 1.00 65.31 O
ATOM 9 C3' C B 574 -12.675 89.399 115.413 1.00 66.23 C
ATOM 10 O3' C B 574 -13.771 89.649 114.541 1.00 68.33 O
ATOM 11 C2' C B 574 -12.393 90.566 116.352 1.00 66.42 C
ATOM 12 O2' C B 574 -13.572 91.219 116.793 1.00 64.80 O
ATOM 13 C1' C B 574 -11.718 89.850 117.529 1.00 66.03 C
ATOM 14 N1 C B 574 -10.236 89.891 117.550 1.00 65.69 N
ATOM 15 C2 C B 574 -9.588 91.009 118.122 1.00 64.39 C
ATOM 16 O2 C B 574 -10.270 91.947 118.569 1.00 62.28 O
ATOM 17 N3 C B 574 -8.234 91.032 118.165 1.00 64.07 N
ATOM 18 C4 C B 574 -7.529 90.013 117.662 1.00 64.06 C
ATOM 19 N4 C B 574 -6.201 90.083 117.727 1.00 64.10 N
ATOM 20 C5 C B 574 -8.157 88.877 117.070 1.00 64.22 C
ATOM 21 C6 C B 574 -9.497 88.858 117.034 1.00 65.56 C
ATOM 22 P A B 575 -13.502 90.224 113.069 1.00 69.26 P
ATOM 23 OP1 A B 575 -13.035 91.632 113.210 1.00 69.03 O
ATOM 24 OP2 A B 575 -14.697 89.927 112.238 1.00 67.71 O
ATOM 25 O5' A B 575 -12.302 89.329 112.526 1.00 68.86 O
TER
Atoms:
C2: (-10.491,96.554,120.893)
OP1: (-4.243,98.670,124.383)
OP2: (-4.676,96.746,122.730)
C4: (-8.838,94.984,120.405)
O5': (-6.405,98.499,123.141)
C3': (-9.028,98.754,124.277)
C1': (-9.936,98.644,122.109)
O4': (-8.824,99.526,122.067)
C5': (-6.886,99.820,123.454)
P: (-4.848,98.175,123.118)
O2: (-11.667,96.948,120.851)
C4': (-8.390,99.835,123.419)
C2': (-10.358,98.519,123.576)
O2': (-11.324,99.506,123.887)
N1: (-9.524,97.358,121.510)
N3: (-10.117,95.369,120.353)
N4: (-8.512,93.811,119.854)
C6: (-8.218,96.950,121.557)
C5: (-7.836,95.784,121.023)
O3': (-9.153,99.141,125.640)
OP1: (-4.243,98.670,124.383)
OP2: (-4.676,96.746,122.730)
C4: (-8.838,94.984,120.405)
O5': (-6.405,98.499,123.141)
C3': (-9.028,98.754,124.277)
C1': (-9.936,98.644,122.109)
O4': (-8.824,99.526,122.067)
C5': (-6.886,99.820,123.454)
P: (-4.848,98.175,123.118)
O2: (-11.667,96.948,120.851)
C4': (-8.390,99.835,123.419)
C2': (-10.358,98.519,123.576)
O2': (-11.324,99.506,123.887)
N1: (-9.524,97.358,121.510)
N3: (-10.117,95.369,120.353)
N4: (-8.512,93.811,119.854)
C6: (-8.218,96.950,121.557)
C5: (-7.836,95.784,121.023)
O3': (-9.153,99.141,125.640)
C2: (-9.588,91.009,118.122)
OP1: (-11.801,84.661,114.137)
OP2: (-9.421,85.460,114.660)
C4: (-7.529,90.013,117.662)
O5': (-11.418,86.743,115.435)
C3': (-12.675,89.399,115.413)
C1': (-11.718,89.850,117.529)
O4': (-12.136,88.492,117.503)
C5': (-12.786,86.895,115.830)
P: (-10.839,85.310,115.065)
O2: (-10.270,91.947,118.569)
C4': (-13.014,88.276,116.372)
C2': (-12.393,90.566,116.352)
O2': (-13.572,91.219,116.793)
N1: (-10.236,89.891,117.550)
N3: (-8.234,91.032,118.165)
N4: (-6.201,90.083,117.727)
C6: (-9.497,88.858,117.034)
C5: (-8.157,88.877,117.070)
O3': (-13.771,89.649,114.541)
OP1: (-11.801,84.661,114.137)
OP2: (-9.421,85.460,114.660)
C4: (-7.529,90.013,117.662)
O5': (-11.418,86.743,115.435)
C3': (-12.675,89.399,115.413)
C1': (-11.718,89.850,117.529)
O4': (-12.136,88.492,117.503)
C5': (-12.786,86.895,115.830)
P: (-10.839,85.310,115.065)
O2: (-10.270,91.947,118.569)
C4': (-13.014,88.276,116.372)
C2': (-12.393,90.566,116.352)
O2': (-13.572,91.219,116.793)
N1: (-10.236,89.891,117.550)
N3: (-8.234,91.032,118.165)
N4: (-6.201,90.083,117.727)
C6: (-9.497,88.858,117.034)
C5: (-8.157,88.877,117.070)
O3': (-13.771,89.649,114.541)
Image (generated by PyMOL):