Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1K9M:A1234:A1240
Extra
PDB:
ATOM 1 O3' A A1233 5.303 79.644 68.326 1.00 52.69 O
ATOM 2 P C A1234 5.652 79.788 66.775 1.00 55.01 P
ATOM 3 OP1 C A1234 5.025 78.621 66.125 1.00 56.33 O
ATOM 4 OP2 C A1234 7.121 79.999 66.624 1.00 54.74 O
ATOM 5 O5' C A1234 4.845 81.100 66.359 1.00 54.07 O
ATOM 6 C5' C A1234 3.408 81.073 66.324 1.00 55.63 C
ATOM 7 C4' C A1234 2.842 82.439 66.007 1.00 58.04 C
ATOM 8 O4' C A1234 3.121 83.385 67.073 1.00 58.21 O
ATOM 9 C3' C A1234 3.401 83.113 64.774 1.00 58.87 C
ATOM 10 O3' C A1234 2.843 82.594 63.597 1.00 61.12 O
ATOM 11 C2' C A1234 3.078 84.583 65.006 1.00 59.16 C
ATOM 12 O2' C A1234 1.796 85.024 64.615 1.00 59.07 O
ATOM 13 C1' C A1234 3.282 84.689 66.518 1.00 59.38 C
ATOM 14 N1 C A1234 4.651 85.135 66.784 1.00 60.01 N
ATOM 15 C2 C A1234 4.905 86.504 66.865 1.00 59.40 C
ATOM 16 O2 C A1234 3.957 87.301 66.752 1.00 59.13 O
ATOM 17 N3 C A1234 6.170 86.925 67.069 1.00 59.64 N
ATOM 18 C4 C A1234 7.154 86.034 67.204 1.00 60.09 C
ATOM 19 N4 C A1234 8.388 86.489 67.416 1.00 60.64 N
ATOM 20 C5 C A1234 6.919 84.634 67.134 1.00 60.03 C
ATOM 21 C6 C A1234 5.667 84.231 66.930 1.00 60.54 C
ATOM 22 P U A1235 3.782 82.392 62.334 1.00 62.92 P
ATOM 23 OP1 U A1235 2.923 81.875 61.236 1.00 64.80 O
ATOM 24 OP2 U A1235 4.957 81.600 62.785 1.00 62.53 O
ATOM 25 O5' U A1235 4.248 83.876 61.993 1.00 62.41 O
TER
ATOM 1 O3' A B1239 8.144 98.337 66.676 1.00 91.47 O
ATOM 2 P C B1240 7.515 98.045 68.138 1.00 91.69 P
ATOM 3 OP1 C B1240 7.523 99.290 68.951 1.00 92.67 O
ATOM 4 OP2 C B1240 8.104 96.805 68.699 1.00 91.91 O
ATOM 5 O5' C B1240 5.987 97.729 67.839 1.00 89.76 O
ATOM 6 C5' C B1240 5.165 97.139 68.840 1.00 85.68 C
ATOM 7 C4' C B1240 3.839 96.740 68.257 1.00 83.18 C
ATOM 8 O4' C B1240 4.026 95.863 67.119 1.00 81.49 O
ATOM 9 C3' C B1240 3.013 95.933 69.228 1.00 82.02 C
ATOM 10 O3' C B1240 2.335 96.799 70.101 1.00 80.46 O
ATOM 11 C2' C B1240 2.103 95.122 68.322 1.00 81.89 C
ATOM 12 O2' C B1240 0.946 95.829 67.901 1.00 81.13 O
ATOM 13 C1' C B1240 3.044 94.836 67.143 1.00 81.85 C
ATOM 14 N1 C B1240 3.741 93.535 67.224 1.00 81.56 N
ATOM 15 C2 C B1240 3.000 92.343 67.092 1.00 81.96 C
ATOM 16 O2 C B1240 1.769 92.403 66.932 1.00 82.33 O
ATOM 17 N3 C B1240 3.651 91.157 67.144 1.00 82.43 N
ATOM 18 C4 C B1240 4.977 91.127 67.324 1.00 82.21 C
ATOM 19 N4 C B1240 5.581 89.933 67.366 1.00 82.29 N
ATOM 20 C5 C B1240 5.746 92.319 67.469 1.00 81.31 C
ATOM 21 C6 C B1240 5.095 93.485 67.415 1.00 81.10 C
ATOM 22 P U B1241 2.490 96.582 71.668 1.00 79.75 P
ATOM 23 OP1 U B1241 1.687 97.667 72.286 1.00 80.69 O
ATOM 24 OP2 U B1241 3.936 96.477 71.983 1.00 78.32 O
ATOM 25 O5' U B1241 1.786 95.160 71.893 1.00 78.06 O
TER
ATOM 2 P C A1234 5.652 79.788 66.775 1.00 55.01 P
ATOM 3 OP1 C A1234 5.025 78.621 66.125 1.00 56.33 O
ATOM 4 OP2 C A1234 7.121 79.999 66.624 1.00 54.74 O
ATOM 5 O5' C A1234 4.845 81.100 66.359 1.00 54.07 O
ATOM 6 C5' C A1234 3.408 81.073 66.324 1.00 55.63 C
ATOM 7 C4' C A1234 2.842 82.439 66.007 1.00 58.04 C
ATOM 8 O4' C A1234 3.121 83.385 67.073 1.00 58.21 O
ATOM 9 C3' C A1234 3.401 83.113 64.774 1.00 58.87 C
ATOM 10 O3' C A1234 2.843 82.594 63.597 1.00 61.12 O
ATOM 11 C2' C A1234 3.078 84.583 65.006 1.00 59.16 C
ATOM 12 O2' C A1234 1.796 85.024 64.615 1.00 59.07 O
ATOM 13 C1' C A1234 3.282 84.689 66.518 1.00 59.38 C
ATOM 14 N1 C A1234 4.651 85.135 66.784 1.00 60.01 N
ATOM 15 C2 C A1234 4.905 86.504 66.865 1.00 59.40 C
ATOM 16 O2 C A1234 3.957 87.301 66.752 1.00 59.13 O
ATOM 17 N3 C A1234 6.170 86.925 67.069 1.00 59.64 N
ATOM 18 C4 C A1234 7.154 86.034 67.204 1.00 60.09 C
ATOM 19 N4 C A1234 8.388 86.489 67.416 1.00 60.64 N
ATOM 20 C5 C A1234 6.919 84.634 67.134 1.00 60.03 C
ATOM 21 C6 C A1234 5.667 84.231 66.930 1.00 60.54 C
ATOM 22 P U A1235 3.782 82.392 62.334 1.00 62.92 P
ATOM 23 OP1 U A1235 2.923 81.875 61.236 1.00 64.80 O
ATOM 24 OP2 U A1235 4.957 81.600 62.785 1.00 62.53 O
ATOM 25 O5' U A1235 4.248 83.876 61.993 1.00 62.41 O
TER
ATOM 1 O3' A B1239 8.144 98.337 66.676 1.00 91.47 O
ATOM 2 P C B1240 7.515 98.045 68.138 1.00 91.69 P
ATOM 3 OP1 C B1240 7.523 99.290 68.951 1.00 92.67 O
ATOM 4 OP2 C B1240 8.104 96.805 68.699 1.00 91.91 O
ATOM 5 O5' C B1240 5.987 97.729 67.839 1.00 89.76 O
ATOM 6 C5' C B1240 5.165 97.139 68.840 1.00 85.68 C
ATOM 7 C4' C B1240 3.839 96.740 68.257 1.00 83.18 C
ATOM 8 O4' C B1240 4.026 95.863 67.119 1.00 81.49 O
ATOM 9 C3' C B1240 3.013 95.933 69.228 1.00 82.02 C
ATOM 10 O3' C B1240 2.335 96.799 70.101 1.00 80.46 O
ATOM 11 C2' C B1240 2.103 95.122 68.322 1.00 81.89 C
ATOM 12 O2' C B1240 0.946 95.829 67.901 1.00 81.13 O
ATOM 13 C1' C B1240 3.044 94.836 67.143 1.00 81.85 C
ATOM 14 N1 C B1240 3.741 93.535 67.224 1.00 81.56 N
ATOM 15 C2 C B1240 3.000 92.343 67.092 1.00 81.96 C
ATOM 16 O2 C B1240 1.769 92.403 66.932 1.00 82.33 O
ATOM 17 N3 C B1240 3.651 91.157 67.144 1.00 82.43 N
ATOM 18 C4 C B1240 4.977 91.127 67.324 1.00 82.21 C
ATOM 19 N4 C B1240 5.581 89.933 67.366 1.00 82.29 N
ATOM 20 C5 C B1240 5.746 92.319 67.469 1.00 81.31 C
ATOM 21 C6 C B1240 5.095 93.485 67.415 1.00 81.10 C
ATOM 22 P U B1241 2.490 96.582 71.668 1.00 79.75 P
ATOM 23 OP1 U B1241 1.687 97.667 72.286 1.00 80.69 O
ATOM 24 OP2 U B1241 3.936 96.477 71.983 1.00 78.32 O
ATOM 25 O5' U B1241 1.786 95.160 71.893 1.00 78.06 O
TER
Atoms:
C2: (4.905,86.504,66.865)
OP1: (5.025,78.621,66.125)
OP2: (7.121,79.999,66.624)
C4: (7.154,86.034,67.204)
O5': (4.845,81.100,66.359)
C3': (3.401,83.113,64.774)
C1': (3.282,84.689,66.518)
O4': (3.121,83.385,67.073)
C5': (3.408,81.073,66.324)
P: (5.652,79.788,66.775)
O2: (3.957,87.301,66.752)
C4': (2.842,82.439,66.007)
C2': (3.078,84.583,65.006)
O2': (1.796,85.024,64.615)
N1: (4.651,85.135,66.784)
N3: (6.170,86.925,67.069)
N4: (8.388,86.489,67.416)
C6: (5.667,84.231,66.930)
C5: (6.919,84.634,67.134)
O3': (2.843,82.594,63.597)
OP1: (5.025,78.621,66.125)
OP2: (7.121,79.999,66.624)
C4: (7.154,86.034,67.204)
O5': (4.845,81.100,66.359)
C3': (3.401,83.113,64.774)
C1': (3.282,84.689,66.518)
O4': (3.121,83.385,67.073)
C5': (3.408,81.073,66.324)
P: (5.652,79.788,66.775)
O2: (3.957,87.301,66.752)
C4': (2.842,82.439,66.007)
C2': (3.078,84.583,65.006)
O2': (1.796,85.024,64.615)
N1: (4.651,85.135,66.784)
N3: (6.170,86.925,67.069)
N4: (8.388,86.489,67.416)
C6: (5.667,84.231,66.930)
C5: (6.919,84.634,67.134)
O3': (2.843,82.594,63.597)
C2: (3.000,92.343,67.092)
OP1: (7.523,99.290,68.951)
OP2: (8.104,96.805,68.699)
C4: (4.977,91.127,67.324)
O5': (5.987,97.729,67.839)
C3': (3.013,95.933,69.228)
C1': (3.044,94.836,67.143)
O4': (4.026,95.863,67.119)
C5': (5.165,97.139,68.840)
P: (7.515,98.045,68.138)
O2: (1.769,92.403,66.932)
C4': (3.839,96.740,68.257)
C2': (2.103,95.122,68.322)
O2': (0.946,95.829,67.901)
N1: (3.741,93.535,67.224)
N3: (3.651,91.157,67.144)
N4: (5.581,89.933,67.366)
C6: (5.095,93.485,67.415)
C5: (5.746,92.319,67.469)
O3': (2.335,96.799,70.101)
OP1: (7.523,99.290,68.951)
OP2: (8.104,96.805,68.699)
C4: (4.977,91.127,67.324)
O5': (5.987,97.729,67.839)
C3': (3.013,95.933,69.228)
C1': (3.044,94.836,67.143)
O4': (4.026,95.863,67.119)
C5': (5.165,97.139,68.840)
P: (7.515,98.045,68.138)
O2: (1.769,92.403,66.932)
C4': (3.839,96.740,68.257)
C2': (2.103,95.122,68.322)
O2': (0.946,95.829,67.901)
N1: (3.741,93.535,67.224)
N3: (3.651,91.157,67.144)
N4: (5.581,89.933,67.366)
C6: (5.095,93.485,67.415)
C5: (5.746,92.319,67.469)
O3': (2.335,96.799,70.101)
Image (generated by PyMOL):