Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0279:0349
Extra
PDB:
ATOM 1 O3' C A 278 61.625 128.453 -1.823 1.00 85.24 O
ATOM 2 P C A 279 60.626 128.967 -0.678 1.00 84.62 P
ATOM 3 OP1 C A 279 60.515 130.441 -0.816 1.00 84.42 O
ATOM 4 OP2 C A 279 61.075 128.382 0.613 1.00 85.09 O
ATOM 5 O5' C A 279 59.221 128.331 -1.082 1.00 83.67 O
ATOM 6 C5' C A 279 58.626 128.630 -2.358 1.00 82.20 C
ATOM 7 C4' C A 279 57.451 127.718 -2.628 1.00 81.59 C
ATOM 8 O4' C A 279 57.882 126.332 -2.653 1.00 81.99 O
ATOM 9 C3' C A 279 56.339 127.734 -1.597 1.00 80.34 C
ATOM 10 O3' C A 279 55.467 128.830 -1.808 1.00 79.42 O
ATOM 11 C2' C A 279 55.637 126.411 -1.864 1.00 80.99 C
ATOM 12 O2' C A 279 54.774 126.472 -2.983 1.00 79.80 O
ATOM 13 C1' C A 279 56.827 125.500 -2.187 1.00 81.11 C
ATOM 14 N1 C A 279 57.309 124.708 -1.034 1.00 80.20 N
ATOM 15 C2 C A 279 56.506 123.654 -0.547 1.00 79.12 C
ATOM 16 O2 C A 279 55.401 123.434 -1.076 1.00 77.56 O
ATOM 17 N3 C A 279 56.955 122.911 0.488 1.00 78.99 N
ATOM 18 C4 C A 279 58.139 123.181 1.043 1.00 79.12 C
ATOM 19 N4 C A 279 58.542 122.410 2.057 1.00 79.36 N
ATOM 20 C5 C A 279 58.963 124.252 0.583 1.00 78.79 C
ATOM 21 C6 C A 279 58.516 124.980 -0.446 1.00 79.01 C
ATOM 22 P G A 280 54.900 129.640 -0.550 1.00 79.44 P
ATOM 23 OP1 G A 280 53.908 130.631 -1.050 1.00 79.34 O
ATOM 24 OP2 G A 280 56.069 130.107 0.239 1.00 80.07 O
ATOM 25 O5' G A 280 54.121 128.532 0.288 1.00 79.25 O
TER
ATOM 1 O3' A B 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 2 P C B 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 3 OP1 C B 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 4 OP2 C B 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 5 O5' C B 349 53.866 114.095 2.449 1.00 83.47 O
ATOM 6 C5' C B 349 52.543 113.549 2.335 1.00 84.67 C
ATOM 7 C4' C B 349 51.729 114.355 1.357 1.00 86.83 C
ATOM 8 O4' C B 349 51.503 115.686 1.894 1.00 86.95 O
ATOM 9 C3' C B 349 52.383 114.618 0.009 1.00 88.35 C
ATOM 10 O3' C B 349 52.291 113.503 -0.877 1.00 90.56 O
ATOM 11 C2' C B 349 51.615 115.841 -0.475 1.00 87.45 C
ATOM 12 O2' C B 349 50.332 115.516 -0.978 1.00 86.07 O
ATOM 13 C1' C B 349 51.472 116.631 0.831 1.00 87.08 C
ATOM 14 N1 C B 349 52.563 117.608 1.038 1.00 86.66 N
ATOM 15 C2 C B 349 52.405 118.924 0.556 1.00 86.31 C
ATOM 16 O2 C B 349 51.342 119.241 -0.005 1.00 85.42 O
ATOM 17 N3 C B 349 53.415 119.813 0.720 1.00 86.15 N
ATOM 18 C4 C B 349 54.541 119.439 1.339 1.00 86.68 C
ATOM 19 N4 C B 349 55.514 120.345 1.473 1.00 86.05 N
ATOM 20 C5 C B 349 54.721 118.118 1.848 1.00 86.99 C
ATOM 21 C6 C B 349 53.719 117.245 1.678 1.00 86.84 C
ATOM 22 P G B 350 53.519 113.168 -1.865 1.00 91.49 P
ATOM 23 OP1 G B 350 53.159 111.938 -2.612 1.00 91.60 O
ATOM 24 OP2 G B 350 54.788 113.204 -1.089 1.00 90.24 O
ATOM 25 O5' G B 350 53.522 114.394 -2.887 1.00 93.13 O
TER
ATOM 2 P C A 279 60.626 128.967 -0.678 1.00 84.62 P
ATOM 3 OP1 C A 279 60.515 130.441 -0.816 1.00 84.42 O
ATOM 4 OP2 C A 279 61.075 128.382 0.613 1.00 85.09 O
ATOM 5 O5' C A 279 59.221 128.331 -1.082 1.00 83.67 O
ATOM 6 C5' C A 279 58.626 128.630 -2.358 1.00 82.20 C
ATOM 7 C4' C A 279 57.451 127.718 -2.628 1.00 81.59 C
ATOM 8 O4' C A 279 57.882 126.332 -2.653 1.00 81.99 O
ATOM 9 C3' C A 279 56.339 127.734 -1.597 1.00 80.34 C
ATOM 10 O3' C A 279 55.467 128.830 -1.808 1.00 79.42 O
ATOM 11 C2' C A 279 55.637 126.411 -1.864 1.00 80.99 C
ATOM 12 O2' C A 279 54.774 126.472 -2.983 1.00 79.80 O
ATOM 13 C1' C A 279 56.827 125.500 -2.187 1.00 81.11 C
ATOM 14 N1 C A 279 57.309 124.708 -1.034 1.00 80.20 N
ATOM 15 C2 C A 279 56.506 123.654 -0.547 1.00 79.12 C
ATOM 16 O2 C A 279 55.401 123.434 -1.076 1.00 77.56 O
ATOM 17 N3 C A 279 56.955 122.911 0.488 1.00 78.99 N
ATOM 18 C4 C A 279 58.139 123.181 1.043 1.00 79.12 C
ATOM 19 N4 C A 279 58.542 122.410 2.057 1.00 79.36 N
ATOM 20 C5 C A 279 58.963 124.252 0.583 1.00 78.79 C
ATOM 21 C6 C A 279 58.516 124.980 -0.446 1.00 79.01 C
ATOM 22 P G A 280 54.900 129.640 -0.550 1.00 79.44 P
ATOM 23 OP1 G A 280 53.908 130.631 -1.050 1.00 79.34 O
ATOM 24 OP2 G A 280 56.069 130.107 0.239 1.00 80.07 O
ATOM 25 O5' G A 280 54.121 128.532 0.288 1.00 79.25 O
TER
ATOM 1 O3' A B 348 54.111 113.925 4.934 1.00 81.57 O
ATOM 2 P C B 349 54.868 113.571 3.569 1.00 83.78 P
ATOM 3 OP1 C B 349 54.961 112.091 3.491 1.00 84.48 O
ATOM 4 OP2 C B 349 56.106 114.389 3.504 1.00 84.99 O
ATOM 5 O5' C B 349 53.866 114.095 2.449 1.00 83.47 O
ATOM 6 C5' C B 349 52.543 113.549 2.335 1.00 84.67 C
ATOM 7 C4' C B 349 51.729 114.355 1.357 1.00 86.83 C
ATOM 8 O4' C B 349 51.503 115.686 1.894 1.00 86.95 O
ATOM 9 C3' C B 349 52.383 114.618 0.009 1.00 88.35 C
ATOM 10 O3' C B 349 52.291 113.503 -0.877 1.00 90.56 O
ATOM 11 C2' C B 349 51.615 115.841 -0.475 1.00 87.45 C
ATOM 12 O2' C B 349 50.332 115.516 -0.978 1.00 86.07 O
ATOM 13 C1' C B 349 51.472 116.631 0.831 1.00 87.08 C
ATOM 14 N1 C B 349 52.563 117.608 1.038 1.00 86.66 N
ATOM 15 C2 C B 349 52.405 118.924 0.556 1.00 86.31 C
ATOM 16 O2 C B 349 51.342 119.241 -0.005 1.00 85.42 O
ATOM 17 N3 C B 349 53.415 119.813 0.720 1.00 86.15 N
ATOM 18 C4 C B 349 54.541 119.439 1.339 1.00 86.68 C
ATOM 19 N4 C B 349 55.514 120.345 1.473 1.00 86.05 N
ATOM 20 C5 C B 349 54.721 118.118 1.848 1.00 86.99 C
ATOM 21 C6 C B 349 53.719 117.245 1.678 1.00 86.84 C
ATOM 22 P G B 350 53.519 113.168 -1.865 1.00 91.49 P
ATOM 23 OP1 G B 350 53.159 111.938 -2.612 1.00 91.60 O
ATOM 24 OP2 G B 350 54.788 113.204 -1.089 1.00 90.24 O
ATOM 25 O5' G B 350 53.522 114.394 -2.887 1.00 93.13 O
TER
Atoms:
C2: (56.506,123.654,-0.547)
OP1: (60.515,130.441,-0.816)
OP2: (61.075,128.382,0.613)
C4: (58.139,123.181,1.043)
O5': (59.221,128.331,-1.082)
C3': (56.339,127.734,-1.597)
C1': (56.827,125.500,-2.187)
O4': (57.882,126.332,-2.653)
C5': (58.626,128.630,-2.358)
P: (60.626,128.967,-0.678)
O2: (55.401,123.434,-1.076)
C4': (57.451,127.718,-2.628)
C2': (55.637,126.411,-1.864)
O2': (54.774,126.472,-2.983)
N1: (57.309,124.708,-1.034)
N3: (56.955,122.911,0.488)
N4: (58.542,122.410,2.057)
C6: (58.516,124.980,-0.446)
C5: (58.963,124.252,0.583)
O3': (55.467,128.830,-1.808)
OP1: (60.515,130.441,-0.816)
OP2: (61.075,128.382,0.613)
C4: (58.139,123.181,1.043)
O5': (59.221,128.331,-1.082)
C3': (56.339,127.734,-1.597)
C1': (56.827,125.500,-2.187)
O4': (57.882,126.332,-2.653)
C5': (58.626,128.630,-2.358)
P: (60.626,128.967,-0.678)
O2: (55.401,123.434,-1.076)
C4': (57.451,127.718,-2.628)
C2': (55.637,126.411,-1.864)
O2': (54.774,126.472,-2.983)
N1: (57.309,124.708,-1.034)
N3: (56.955,122.911,0.488)
N4: (58.542,122.410,2.057)
C6: (58.516,124.980,-0.446)
C5: (58.963,124.252,0.583)
O3': (55.467,128.830,-1.808)
C2: (52.405,118.924,0.556)
OP1: (54.961,112.091,3.491)
OP2: (56.106,114.389,3.504)
C4: (54.541,119.439,1.339)
O5': (53.866,114.095,2.449)
C3': (52.383,114.618,0.009)
C1': (51.472,116.631,0.831)
O4': (51.503,115.686,1.894)
C5': (52.543,113.549,2.335)
P: (54.868,113.571,3.569)
O2: (51.342,119.241,-0.005)
C4': (51.729,114.355,1.357)
C2': (51.615,115.841,-0.475)
O2': (50.332,115.516,-0.978)
N1: (52.563,117.608,1.038)
N3: (53.415,119.813,0.720)
N4: (55.514,120.345,1.473)
C6: (53.719,117.245,1.678)
C5: (54.721,118.118,1.848)
O3': (52.291,113.503,-0.877)
OP1: (54.961,112.091,3.491)
OP2: (56.106,114.389,3.504)
C4: (54.541,119.439,1.339)
O5': (53.866,114.095,2.449)
C3': (52.383,114.618,0.009)
C1': (51.472,116.631,0.831)
O4': (51.503,115.686,1.894)
C5': (52.543,113.549,2.335)
P: (54.868,113.571,3.569)
O2: (51.342,119.241,-0.005)
C4': (51.729,114.355,1.357)
C2': (51.615,115.841,-0.475)
O2': (50.332,115.516,-0.978)
N1: (52.563,117.608,1.038)
N3: (53.415,119.813,0.720)
N4: (55.514,120.345,1.473)
C6: (53.719,117.245,1.678)
C5: (54.721,118.118,1.848)
O3': (52.291,113.503,-0.877)
Image (generated by PyMOL):