Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1NJI:A1234:A1240
Extra
PDB:
ATOM 1 O3' A A1233 4.870 79.767 67.882 1.00 46.17 O
ATOM 2 P C A1234 5.216 79.921 66.332 1.00 47.45 P
ATOM 3 OP1 C A1234 4.650 78.761 65.620 1.00 47.75 O
ATOM 4 OP2 C A1234 6.674 80.200 66.232 1.00 49.54 O
ATOM 5 O5' C A1234 4.405 81.225 65.909 1.00 45.69 O
ATOM 6 C5' C A1234 2.969 81.216 65.888 1.00 44.54 C
ATOM 7 C4' C A1234 2.435 82.584 65.560 1.00 45.09 C
ATOM 8 O4' C A1234 2.718 83.516 66.634 1.00 45.05 O
ATOM 9 C3' C A1234 3.054 83.239 64.348 1.00 45.75 C
ATOM 10 O3' C A1234 2.511 82.730 63.148 1.00 49.11 O
ATOM 11 C2' C A1234 2.721 84.705 64.574 1.00 45.53 C
ATOM 12 O2' C A1234 1.405 85.036 64.193 1.00 45.44 O
ATOM 13 C1' C A1234 2.903 84.817 66.091 1.00 45.21 C
ATOM 14 N1 C A1234 4.266 85.274 66.405 1.00 45.33 N
ATOM 15 C2 C A1234 4.503 86.648 66.492 1.00 45.13 C
ATOM 16 O2 C A1234 3.540 87.428 66.403 1.00 44.94 O
ATOM 17 N3 C A1234 5.769 87.089 66.676 1.00 43.88 N
ATOM 18 C4 C A1234 6.767 86.210 66.800 1.00 44.13 C
ATOM 19 N4 C A1234 8.003 86.681 66.959 1.00 44.33 N
ATOM 20 C5 C A1234 6.543 84.804 66.764 1.00 44.28 C
ATOM 21 C6 C A1234 5.292 84.384 66.569 1.00 44.36 C
ATOM 22 P U A1235 3.476 82.497 61.895 1.00 52.46 P
ATOM 23 OP1 U A1235 2.666 81.965 60.774 1.00 53.84 O
ATOM 24 OP2 U A1235 4.637 81.716 62.389 1.00 53.28 O
ATOM 25 O5' U A1235 3.943 83.979 61.539 1.00 53.77 O
TER
ATOM 1 O3' A B1239 7.832 98.392 66.269 1.00 81.55 O
ATOM 2 P C B1240 7.203 98.116 67.727 1.00 80.71 P
ATOM 3 OP1 C B1240 7.261 99.376 68.505 1.00 80.76 O
ATOM 4 OP2 C B1240 7.775 96.867 68.303 1.00 80.73 O
ATOM 5 O5' C B1240 5.667 97.847 67.435 1.00 78.73 O
ATOM 6 C5' C B1240 4.835 97.296 68.447 1.00 74.93 C
ATOM 7 C4' C B1240 3.513 96.890 67.870 1.00 72.81 C
ATOM 8 O4' C B1240 3.704 96.006 66.739 1.00 71.71 O
ATOM 9 C3' C B1240 2.693 96.076 68.839 1.00 71.40 C
ATOM 10 O3' C B1240 2.015 96.922 69.729 1.00 69.55 O
ATOM 11 C2' C B1240 1.770 95.293 67.926 1.00 71.68 C
ATOM 12 O2' C B1240 0.677 96.075 67.482 1.00 71.74 O
ATOM 13 C1' C B1240 2.715 94.985 66.761 1.00 71.76 C
ATOM 14 N1 C B1240 3.399 93.680 66.869 1.00 71.10 N
ATOM 15 C2 C B1240 2.646 92.502 66.727 1.00 71.72 C
ATOM 16 O2 C B1240 1.412 92.585 66.590 1.00 72.62 O
ATOM 17 N3 C B1240 3.282 91.309 66.751 1.00 71.37 N
ATOM 18 C4 C B1240 4.609 91.260 66.923 1.00 70.75 C
ATOM 19 N4 C B1240 5.198 90.061 66.904 1.00 70.85 N
ATOM 20 C5 C B1240 5.389 92.437 67.112 1.00 70.29 C
ATOM 21 C6 C B1240 4.751 93.612 67.079 1.00 70.38 C
ATOM 22 P U B1241 2.096 96.615 71.286 1.00 68.96 P
ATOM 23 OP1 U B1241 1.247 97.618 71.974 1.00 70.34 O
ATOM 24 OP2 U B1241 3.535 96.501 71.634 1.00 68.29 O
ATOM 25 O5' U B1241 1.401 95.184 71.396 1.00 68.30 O
TER
ATOM 2 P C A1234 5.216 79.921 66.332 1.00 47.45 P
ATOM 3 OP1 C A1234 4.650 78.761 65.620 1.00 47.75 O
ATOM 4 OP2 C A1234 6.674 80.200 66.232 1.00 49.54 O
ATOM 5 O5' C A1234 4.405 81.225 65.909 1.00 45.69 O
ATOM 6 C5' C A1234 2.969 81.216 65.888 1.00 44.54 C
ATOM 7 C4' C A1234 2.435 82.584 65.560 1.00 45.09 C
ATOM 8 O4' C A1234 2.718 83.516 66.634 1.00 45.05 O
ATOM 9 C3' C A1234 3.054 83.239 64.348 1.00 45.75 C
ATOM 10 O3' C A1234 2.511 82.730 63.148 1.00 49.11 O
ATOM 11 C2' C A1234 2.721 84.705 64.574 1.00 45.53 C
ATOM 12 O2' C A1234 1.405 85.036 64.193 1.00 45.44 O
ATOM 13 C1' C A1234 2.903 84.817 66.091 1.00 45.21 C
ATOM 14 N1 C A1234 4.266 85.274 66.405 1.00 45.33 N
ATOM 15 C2 C A1234 4.503 86.648 66.492 1.00 45.13 C
ATOM 16 O2 C A1234 3.540 87.428 66.403 1.00 44.94 O
ATOM 17 N3 C A1234 5.769 87.089 66.676 1.00 43.88 N
ATOM 18 C4 C A1234 6.767 86.210 66.800 1.00 44.13 C
ATOM 19 N4 C A1234 8.003 86.681 66.959 1.00 44.33 N
ATOM 20 C5 C A1234 6.543 84.804 66.764 1.00 44.28 C
ATOM 21 C6 C A1234 5.292 84.384 66.569 1.00 44.36 C
ATOM 22 P U A1235 3.476 82.497 61.895 1.00 52.46 P
ATOM 23 OP1 U A1235 2.666 81.965 60.774 1.00 53.84 O
ATOM 24 OP2 U A1235 4.637 81.716 62.389 1.00 53.28 O
ATOM 25 O5' U A1235 3.943 83.979 61.539 1.00 53.77 O
TER
ATOM 1 O3' A B1239 7.832 98.392 66.269 1.00 81.55 O
ATOM 2 P C B1240 7.203 98.116 67.727 1.00 80.71 P
ATOM 3 OP1 C B1240 7.261 99.376 68.505 1.00 80.76 O
ATOM 4 OP2 C B1240 7.775 96.867 68.303 1.00 80.73 O
ATOM 5 O5' C B1240 5.667 97.847 67.435 1.00 78.73 O
ATOM 6 C5' C B1240 4.835 97.296 68.447 1.00 74.93 C
ATOM 7 C4' C B1240 3.513 96.890 67.870 1.00 72.81 C
ATOM 8 O4' C B1240 3.704 96.006 66.739 1.00 71.71 O
ATOM 9 C3' C B1240 2.693 96.076 68.839 1.00 71.40 C
ATOM 10 O3' C B1240 2.015 96.922 69.729 1.00 69.55 O
ATOM 11 C2' C B1240 1.770 95.293 67.926 1.00 71.68 C
ATOM 12 O2' C B1240 0.677 96.075 67.482 1.00 71.74 O
ATOM 13 C1' C B1240 2.715 94.985 66.761 1.00 71.76 C
ATOM 14 N1 C B1240 3.399 93.680 66.869 1.00 71.10 N
ATOM 15 C2 C B1240 2.646 92.502 66.727 1.00 71.72 C
ATOM 16 O2 C B1240 1.412 92.585 66.590 1.00 72.62 O
ATOM 17 N3 C B1240 3.282 91.309 66.751 1.00 71.37 N
ATOM 18 C4 C B1240 4.609 91.260 66.923 1.00 70.75 C
ATOM 19 N4 C B1240 5.198 90.061 66.904 1.00 70.85 N
ATOM 20 C5 C B1240 5.389 92.437 67.112 1.00 70.29 C
ATOM 21 C6 C B1240 4.751 93.612 67.079 1.00 70.38 C
ATOM 22 P U B1241 2.096 96.615 71.286 1.00 68.96 P
ATOM 23 OP1 U B1241 1.247 97.618 71.974 1.00 70.34 O
ATOM 24 OP2 U B1241 3.535 96.501 71.634 1.00 68.29 O
ATOM 25 O5' U B1241 1.401 95.184 71.396 1.00 68.30 O
TER
Atoms:
C2: (4.503,86.648,66.492)
OP1: (4.650,78.761,65.620)
OP2: (6.674,80.200,66.232)
C4: (6.767,86.210,66.800)
O5': (4.405,81.225,65.909)
C3': (3.054,83.239,64.348)
C1': (2.903,84.817,66.091)
O4': (2.718,83.516,66.634)
C5': (2.969,81.216,65.888)
P: (5.216,79.921,66.332)
O2: (3.540,87.428,66.403)
C4': (2.435,82.584,65.560)
C2': (2.721,84.705,64.574)
O2': (1.405,85.036,64.193)
N1: (4.266,85.274,66.405)
N3: (5.769,87.089,66.676)
N4: (8.003,86.681,66.959)
C6: (5.292,84.384,66.569)
C5: (6.543,84.804,66.764)
O3': (2.511,82.730,63.148)
OP1: (4.650,78.761,65.620)
OP2: (6.674,80.200,66.232)
C4: (6.767,86.210,66.800)
O5': (4.405,81.225,65.909)
C3': (3.054,83.239,64.348)
C1': (2.903,84.817,66.091)
O4': (2.718,83.516,66.634)
C5': (2.969,81.216,65.888)
P: (5.216,79.921,66.332)
O2: (3.540,87.428,66.403)
C4': (2.435,82.584,65.560)
C2': (2.721,84.705,64.574)
O2': (1.405,85.036,64.193)
N1: (4.266,85.274,66.405)
N3: (5.769,87.089,66.676)
N4: (8.003,86.681,66.959)
C6: (5.292,84.384,66.569)
C5: (6.543,84.804,66.764)
O3': (2.511,82.730,63.148)
C2: (2.646,92.502,66.727)
OP1: (7.261,99.376,68.505)
OP2: (7.775,96.867,68.303)
C4: (4.609,91.260,66.923)
O5': (5.667,97.847,67.435)
C3': (2.693,96.076,68.839)
C1': (2.715,94.985,66.761)
O4': (3.704,96.006,66.739)
C5': (4.835,97.296,68.447)
P: (7.203,98.116,67.727)
O2: (1.412,92.585,66.590)
C4': (3.513,96.890,67.870)
C2': (1.770,95.293,67.926)
O2': (0.677,96.075,67.482)
N1: (3.399,93.680,66.869)
N3: (3.282,91.309,66.751)
N4: (5.198,90.061,66.904)
C6: (4.751,93.612,67.079)
C5: (5.389,92.437,67.112)
O3': (2.015,96.922,69.729)
OP1: (7.261,99.376,68.505)
OP2: (7.775,96.867,68.303)
C4: (4.609,91.260,66.923)
O5': (5.667,97.847,67.435)
C3': (2.693,96.076,68.839)
C1': (2.715,94.985,66.761)
O4': (3.704,96.006,66.739)
C5': (4.835,97.296,68.447)
P: (7.203,98.116,67.727)
O2: (1.412,92.585,66.590)
C4': (3.513,96.890,67.870)
C2': (1.770,95.293,67.926)
O2': (0.677,96.075,67.482)
N1: (3.399,93.680,66.869)
N3: (3.282,91.309,66.751)
N4: (5.198,90.061,66.904)
C6: (4.751,93.612,67.079)
C5: (5.389,92.437,67.112)
O3': (2.015,96.922,69.729)
Image (generated by PyMOL):