Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02078:02107
Extra
PDB:
ATOM 1 O3' G A2077 107.051 105.471 33.435 1.00 56.13 O
ATOM 2 P C A2078 108.465 105.925 32.809 1.00 57.13 P
ATOM 3 OP1 C A2078 108.314 105.829 31.334 1.00 56.54 O
ATOM 4 OP2 C A2078 109.534 105.152 33.494 1.00 55.70 O
ATOM 5 O5' C A2078 108.596 107.467 33.199 1.00 56.29 O
ATOM 6 C5' C A2078 107.693 108.440 32.627 1.00 56.44 C
ATOM 7 C4' C A2078 107.882 109.797 33.264 1.00 55.32 C
ATOM 8 O4' C A2078 107.608 109.726 34.684 1.00 55.08 O
ATOM 9 C3' C A2078 109.273 110.396 33.190 1.00 55.62 C
ATOM 10 O3' C A2078 109.463 110.994 31.918 1.00 57.81 O
ATOM 11 C2' C A2078 109.238 111.421 34.318 1.00 54.48 C
ATOM 12 O2' C A2078 108.552 112.603 33.963 1.00 53.61 O
ATOM 13 C1' C A2078 108.403 110.681 35.366 1.00 53.95 C
ATOM 14 N1 C A2078 109.178 109.989 36.413 1.00 53.91 N
ATOM 15 C2 C A2078 109.520 110.697 37.582 1.00 54.65 C
ATOM 16 O2 C A2078 109.194 111.900 37.685 1.00 56.14 O
ATOM 17 N3 C A2078 110.194 110.057 38.566 1.00 54.20 N
ATOM 18 C4 C A2078 110.534 108.775 38.418 1.00 53.57 C
ATOM 19 N4 C A2078 111.188 108.186 39.423 1.00 54.24 N
ATOM 20 C5 C A2078 110.218 108.039 37.236 1.00 52.27 C
ATOM 21 C6 C A2078 109.547 108.677 36.270 1.00 52.32 C
ATOM 22 P U A2079 110.938 111.113 31.291 1.00 59.34 P
ATOM 23 OP1 U A2079 111.630 112.245 31.958 1.00 59.10 O
ATOM 24 OP2 U A2079 110.802 111.098 29.806 1.00 57.80 O
ATOM 25 O5' U A2079 111.687 109.782 31.718 1.00 58.19 O
TER
ATOM 1 O3' A B2106 112.791 113.905 47.618 1.00 54.34 O
ATOM 2 P C B2107 111.212 113.636 47.649 1.00 54.87 P
ATOM 3 OP1 C B2107 110.770 113.937 49.029 1.00 55.20 O
ATOM 4 OP2 C B2107 110.938 112.301 47.058 1.00 54.77 O
ATOM 5 O5' C B2107 110.615 114.736 46.668 1.00 53.21 O
ATOM 6 C5' C B2107 110.592 116.118 47.042 1.00 50.47 C
ATOM 7 C4' C B2107 110.016 116.939 45.924 1.00 49.29 C
ATOM 8 O4' C B2107 110.809 116.714 44.732 1.00 48.99 O
ATOM 9 C3' C B2107 108.608 116.567 45.492 1.00 49.23 C
ATOM 10 O3' C B2107 107.625 117.150 46.343 1.00 50.14 O
ATOM 11 C2' C B2107 108.564 117.113 44.070 1.00 48.38 C
ATOM 12 O2' C B2107 108.392 118.515 44.012 1.00 47.71 O
ATOM 13 C1' C B2107 109.977 116.784 43.586 1.00 47.65 C
ATOM 14 N1 C B2107 110.061 115.507 42.858 1.00 45.64 N
ATOM 15 C2 C B2107 109.658 115.472 41.514 1.00 45.34 C
ATOM 16 O2 C B2107 109.255 116.525 40.975 1.00 43.00 O
ATOM 17 N3 C B2107 109.717 114.299 40.837 1.00 45.33 N
ATOM 18 C4 C B2107 110.164 113.197 41.448 1.00 45.48 C
ATOM 19 N4 C B2107 110.207 112.061 40.742 1.00 45.45 N
ATOM 20 C5 C B2107 110.585 113.209 42.812 1.00 44.76 C
ATOM 21 C6 C B2107 110.516 114.371 43.471 1.00 44.50 C
ATOM 22 P C B2108 106.413 116.252 46.904 1.00 49.11 P
ATOM 23 OP1 C B2108 105.601 117.139 47.768 1.00 48.53 O
ATOM 24 OP2 C B2108 106.961 114.985 47.449 1.00 47.04 O
ATOM 25 O5' C B2108 105.539 115.926 45.617 1.00 49.18 O
TER
ATOM 2 P C A2078 108.465 105.925 32.809 1.00 57.13 P
ATOM 3 OP1 C A2078 108.314 105.829 31.334 1.00 56.54 O
ATOM 4 OP2 C A2078 109.534 105.152 33.494 1.00 55.70 O
ATOM 5 O5' C A2078 108.596 107.467 33.199 1.00 56.29 O
ATOM 6 C5' C A2078 107.693 108.440 32.627 1.00 56.44 C
ATOM 7 C4' C A2078 107.882 109.797 33.264 1.00 55.32 C
ATOM 8 O4' C A2078 107.608 109.726 34.684 1.00 55.08 O
ATOM 9 C3' C A2078 109.273 110.396 33.190 1.00 55.62 C
ATOM 10 O3' C A2078 109.463 110.994 31.918 1.00 57.81 O
ATOM 11 C2' C A2078 109.238 111.421 34.318 1.00 54.48 C
ATOM 12 O2' C A2078 108.552 112.603 33.963 1.00 53.61 O
ATOM 13 C1' C A2078 108.403 110.681 35.366 1.00 53.95 C
ATOM 14 N1 C A2078 109.178 109.989 36.413 1.00 53.91 N
ATOM 15 C2 C A2078 109.520 110.697 37.582 1.00 54.65 C
ATOM 16 O2 C A2078 109.194 111.900 37.685 1.00 56.14 O
ATOM 17 N3 C A2078 110.194 110.057 38.566 1.00 54.20 N
ATOM 18 C4 C A2078 110.534 108.775 38.418 1.00 53.57 C
ATOM 19 N4 C A2078 111.188 108.186 39.423 1.00 54.24 N
ATOM 20 C5 C A2078 110.218 108.039 37.236 1.00 52.27 C
ATOM 21 C6 C A2078 109.547 108.677 36.270 1.00 52.32 C
ATOM 22 P U A2079 110.938 111.113 31.291 1.00 59.34 P
ATOM 23 OP1 U A2079 111.630 112.245 31.958 1.00 59.10 O
ATOM 24 OP2 U A2079 110.802 111.098 29.806 1.00 57.80 O
ATOM 25 O5' U A2079 111.687 109.782 31.718 1.00 58.19 O
TER
ATOM 1 O3' A B2106 112.791 113.905 47.618 1.00 54.34 O
ATOM 2 P C B2107 111.212 113.636 47.649 1.00 54.87 P
ATOM 3 OP1 C B2107 110.770 113.937 49.029 1.00 55.20 O
ATOM 4 OP2 C B2107 110.938 112.301 47.058 1.00 54.77 O
ATOM 5 O5' C B2107 110.615 114.736 46.668 1.00 53.21 O
ATOM 6 C5' C B2107 110.592 116.118 47.042 1.00 50.47 C
ATOM 7 C4' C B2107 110.016 116.939 45.924 1.00 49.29 C
ATOM 8 O4' C B2107 110.809 116.714 44.732 1.00 48.99 O
ATOM 9 C3' C B2107 108.608 116.567 45.492 1.00 49.23 C
ATOM 10 O3' C B2107 107.625 117.150 46.343 1.00 50.14 O
ATOM 11 C2' C B2107 108.564 117.113 44.070 1.00 48.38 C
ATOM 12 O2' C B2107 108.392 118.515 44.012 1.00 47.71 O
ATOM 13 C1' C B2107 109.977 116.784 43.586 1.00 47.65 C
ATOM 14 N1 C B2107 110.061 115.507 42.858 1.00 45.64 N
ATOM 15 C2 C B2107 109.658 115.472 41.514 1.00 45.34 C
ATOM 16 O2 C B2107 109.255 116.525 40.975 1.00 43.00 O
ATOM 17 N3 C B2107 109.717 114.299 40.837 1.00 45.33 N
ATOM 18 C4 C B2107 110.164 113.197 41.448 1.00 45.48 C
ATOM 19 N4 C B2107 110.207 112.061 40.742 1.00 45.45 N
ATOM 20 C5 C B2107 110.585 113.209 42.812 1.00 44.76 C
ATOM 21 C6 C B2107 110.516 114.371 43.471 1.00 44.50 C
ATOM 22 P C B2108 106.413 116.252 46.904 1.00 49.11 P
ATOM 23 OP1 C B2108 105.601 117.139 47.768 1.00 48.53 O
ATOM 24 OP2 C B2108 106.961 114.985 47.449 1.00 47.04 O
ATOM 25 O5' C B2108 105.539 115.926 45.617 1.00 49.18 O
TER
Atoms:
C2: (109.520,110.697,37.582)
OP1: (108.314,105.829,31.334)
OP2: (109.534,105.152,33.494)
C4: (110.534,108.775,38.418)
O5': (108.596,107.467,33.199)
C3': (109.273,110.396,33.190)
C1': (108.403,110.681,35.366)
O4': (107.608,109.726,34.684)
C5': (107.693,108.440,32.627)
P: (108.465,105.925,32.809)
O2: (109.194,111.900,37.685)
C4': (107.882,109.797,33.264)
C2': (109.238,111.421,34.318)
O2': (108.552,112.603,33.963)
N1: (109.178,109.989,36.413)
N3: (110.194,110.057,38.566)
N4: (111.188,108.186,39.423)
C6: (109.547,108.677,36.270)
C5: (110.218,108.039,37.236)
O3': (109.463,110.994,31.918)
OP1: (108.314,105.829,31.334)
OP2: (109.534,105.152,33.494)
C4: (110.534,108.775,38.418)
O5': (108.596,107.467,33.199)
C3': (109.273,110.396,33.190)
C1': (108.403,110.681,35.366)
O4': (107.608,109.726,34.684)
C5': (107.693,108.440,32.627)
P: (108.465,105.925,32.809)
O2: (109.194,111.900,37.685)
C4': (107.882,109.797,33.264)
C2': (109.238,111.421,34.318)
O2': (108.552,112.603,33.963)
N1: (109.178,109.989,36.413)
N3: (110.194,110.057,38.566)
N4: (111.188,108.186,39.423)
C6: (109.547,108.677,36.270)
C5: (110.218,108.039,37.236)
O3': (109.463,110.994,31.918)
C2: (109.658,115.472,41.514)
OP1: (110.770,113.937,49.029)
OP2: (110.938,112.301,47.058)
C4: (110.164,113.197,41.448)
O5': (110.615,114.736,46.668)
C3': (108.608,116.567,45.492)
C1': (109.977,116.784,43.586)
O4': (110.809,116.714,44.732)
C5': (110.592,116.118,47.042)
P: (111.212,113.636,47.649)
O2: (109.255,116.525,40.975)
C4': (110.016,116.939,45.924)
C2': (108.564,117.113,44.070)
O2': (108.392,118.515,44.012)
N1: (110.061,115.507,42.858)
N3: (109.717,114.299,40.837)
N4: (110.207,112.061,40.742)
C6: (110.516,114.371,43.471)
C5: (110.585,113.209,42.812)
O3': (107.625,117.150,46.343)
OP1: (110.770,113.937,49.029)
OP2: (110.938,112.301,47.058)
C4: (110.164,113.197,41.448)
O5': (110.615,114.736,46.668)
C3': (108.608,116.567,45.492)
C1': (109.977,116.784,43.586)
O4': (110.809,116.714,44.732)
C5': (110.592,116.118,47.042)
P: (111.212,113.636,47.649)
O2: (109.255,116.525,40.975)
C4': (110.016,116.939,45.924)
C2': (108.564,117.113,44.070)
O2': (108.392,118.515,44.012)
N1: (110.061,115.507,42.858)
N3: (109.717,114.299,40.837)
N4: (110.207,112.061,40.742)
C6: (110.516,114.371,43.471)
C5: (110.585,113.209,42.812)
O3': (107.625,117.150,46.343)
Image (generated by PyMOL):