Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y60:Y12
Extra
PDB:
ATOM 1 O3' A A 59 0.816 22.104 44.215 1.00 28.94 O
ATOM 2 P A A 60 0.822 22.096 45.818 1.00 28.88 P
ATOM 3 OP1 A A 60 -0.577 22.067 46.296 1.00 29.05 O
ATOM 4 OP2 A A 60 1.722 23.178 46.270 1.00 28.76 O
ATOM 5 O5' A A 60 1.517 20.694 46.151 1.00 28.47 O
ATOM 6 C5' A A 60 0.815 19.479 45.920 1.00 28.29 C
ATOM 7 C4' A A 60 1.752 18.287 45.995 1.00 28.53 C
ATOM 8 O4' A A 60 2.792 18.420 44.995 1.00 27.90 O
ATOM 9 C3' A A 60 2.511 18.134 47.304 1.00 28.95 C
ATOM 10 O3' A A 60 1.717 17.447 48.253 1.00 30.22 O
ATOM 11 C2' A A 60 3.701 17.291 46.865 1.00 28.36 C
ATOM 12 O2' A A 60 3.374 15.921 46.727 1.00 28.47 O
ATOM 13 C1' A A 60 4.004 17.889 45.495 1.00 27.92 C
ATOM 14 N9 A A 60 5.014 18.943 45.523 1.00 27.46 N
ATOM 15 C8 A A 60 4.804 20.294 45.546 1.00 27.09 C
ATOM 16 N7 A A 60 5.911 20.999 45.564 1.00 27.11 N
ATOM 17 C5 A A 60 6.915 20.046 45.546 1.00 27.08 C
ATOM 18 C6 A A 60 8.322 20.144 45.552 1.00 27.18 C
ATOM 19 N6 A A 60 8.977 21.309 45.574 1.00 27.04 N
ATOM 20 N1 A A 60 9.030 18.995 45.533 1.00 27.06 N
ATOM 21 C2 A A 60 8.371 17.831 45.510 1.00 26.63 C
ATOM 22 N3 A A 60 7.057 17.614 45.505 1.00 26.82 N
ATOM 23 C4 A A 60 6.380 18.773 45.523 1.00 27.02 C
ATOM 24 P U A 61 1.842 17.808 49.805 1.00 31.15 P
ATOM 25 OP1 U A 61 0.607 17.331 50.466 1.00 31.19 O
ATOM 26 OP2 U A 61 2.238 19.229 49.923 1.00 31.29 O
ATOM 27 O5' U A 61 3.079 16.912 50.285 1.00 30.53 O
TER
ATOM 1 O3' G B 11 7.164 8.566 48.314 1.00 32.86 O
ATOM 2 P C B 12 6.261 8.640 46.997 1.00 32.43 P
ATOM 3 OP1 C B 12 4.902 8.186 47.363 1.00 32.86 O
ATOM 4 OP2 C B 12 7.005 7.976 45.903 1.00 32.59 O
ATOM 5 O5' C B 12 6.211 10.200 46.650 1.00 32.05 O
ATOM 6 C5' C B 12 5.583 11.119 47.534 1.00 31.37 C
ATOM 7 C4' C B 12 5.918 12.534 47.105 1.00 30.48 C
ATOM 8 O4' C B 12 7.356 12.706 47.124 1.00 29.49 O
ATOM 9 C3' C B 12 5.541 12.854 45.667 1.00 30.80 C
ATOM 10 O3' C B 12 4.167 13.209 45.578 1.00 31.97 O
ATOM 11 C2' C B 12 6.471 14.022 45.359 1.00 29.72 C
ATOM 12 O2' C B 12 5.998 15.250 45.876 1.00 29.45 O
ATOM 13 C1' C B 12 7.741 13.603 46.096 1.00 29.28 C
ATOM 14 N1 C B 12 8.759 12.946 45.219 1.00 28.95 N
ATOM 15 C2 C B 12 9.521 13.732 44.347 1.00 28.51 C
ATOM 16 O2 C B 12 9.329 14.952 44.321 1.00 28.28 O
ATOM 17 N3 C B 12 10.452 13.133 43.561 1.00 26.68 N
ATOM 18 C4 C B 12 10.623 11.813 43.619 1.00 27.09 C
ATOM 19 N4 C B 12 11.551 11.269 42.824 1.00 26.80 N
ATOM 20 C5 C B 12 9.856 10.990 44.498 1.00 27.56 C
ATOM 21 C6 C B 12 8.944 11.593 45.270 1.00 28.76 C
ATOM 22 P C B 13 3.281 12.639 44.373 1.00 33.15 P
ATOM 23 OP1 C B 13 1.857 12.837 44.724 1.00 33.26 O
ATOM 24 OP2 C B 13 3.782 11.287 44.027 1.00 33.32 O
ATOM 25 O5' C B 13 3.654 13.630 43.175 1.00 33.01 O
TER
ATOM 2 P A A 60 0.822 22.096 45.818 1.00 28.88 P
ATOM 3 OP1 A A 60 -0.577 22.067 46.296 1.00 29.05 O
ATOM 4 OP2 A A 60 1.722 23.178 46.270 1.00 28.76 O
ATOM 5 O5' A A 60 1.517 20.694 46.151 1.00 28.47 O
ATOM 6 C5' A A 60 0.815 19.479 45.920 1.00 28.29 C
ATOM 7 C4' A A 60 1.752 18.287 45.995 1.00 28.53 C
ATOM 8 O4' A A 60 2.792 18.420 44.995 1.00 27.90 O
ATOM 9 C3' A A 60 2.511 18.134 47.304 1.00 28.95 C
ATOM 10 O3' A A 60 1.717 17.447 48.253 1.00 30.22 O
ATOM 11 C2' A A 60 3.701 17.291 46.865 1.00 28.36 C
ATOM 12 O2' A A 60 3.374 15.921 46.727 1.00 28.47 O
ATOM 13 C1' A A 60 4.004 17.889 45.495 1.00 27.92 C
ATOM 14 N9 A A 60 5.014 18.943 45.523 1.00 27.46 N
ATOM 15 C8 A A 60 4.804 20.294 45.546 1.00 27.09 C
ATOM 16 N7 A A 60 5.911 20.999 45.564 1.00 27.11 N
ATOM 17 C5 A A 60 6.915 20.046 45.546 1.00 27.08 C
ATOM 18 C6 A A 60 8.322 20.144 45.552 1.00 27.18 C
ATOM 19 N6 A A 60 8.977 21.309 45.574 1.00 27.04 N
ATOM 20 N1 A A 60 9.030 18.995 45.533 1.00 27.06 N
ATOM 21 C2 A A 60 8.371 17.831 45.510 1.00 26.63 C
ATOM 22 N3 A A 60 7.057 17.614 45.505 1.00 26.82 N
ATOM 23 C4 A A 60 6.380 18.773 45.523 1.00 27.02 C
ATOM 24 P U A 61 1.842 17.808 49.805 1.00 31.15 P
ATOM 25 OP1 U A 61 0.607 17.331 50.466 1.00 31.19 O
ATOM 26 OP2 U A 61 2.238 19.229 49.923 1.00 31.29 O
ATOM 27 O5' U A 61 3.079 16.912 50.285 1.00 30.53 O
TER
ATOM 1 O3' G B 11 7.164 8.566 48.314 1.00 32.86 O
ATOM 2 P C B 12 6.261 8.640 46.997 1.00 32.43 P
ATOM 3 OP1 C B 12 4.902 8.186 47.363 1.00 32.86 O
ATOM 4 OP2 C B 12 7.005 7.976 45.903 1.00 32.59 O
ATOM 5 O5' C B 12 6.211 10.200 46.650 1.00 32.05 O
ATOM 6 C5' C B 12 5.583 11.119 47.534 1.00 31.37 C
ATOM 7 C4' C B 12 5.918 12.534 47.105 1.00 30.48 C
ATOM 8 O4' C B 12 7.356 12.706 47.124 1.00 29.49 O
ATOM 9 C3' C B 12 5.541 12.854 45.667 1.00 30.80 C
ATOM 10 O3' C B 12 4.167 13.209 45.578 1.00 31.97 O
ATOM 11 C2' C B 12 6.471 14.022 45.359 1.00 29.72 C
ATOM 12 O2' C B 12 5.998 15.250 45.876 1.00 29.45 O
ATOM 13 C1' C B 12 7.741 13.603 46.096 1.00 29.28 C
ATOM 14 N1 C B 12 8.759 12.946 45.219 1.00 28.95 N
ATOM 15 C2 C B 12 9.521 13.732 44.347 1.00 28.51 C
ATOM 16 O2 C B 12 9.329 14.952 44.321 1.00 28.28 O
ATOM 17 N3 C B 12 10.452 13.133 43.561 1.00 26.68 N
ATOM 18 C4 C B 12 10.623 11.813 43.619 1.00 27.09 C
ATOM 19 N4 C B 12 11.551 11.269 42.824 1.00 26.80 N
ATOM 20 C5 C B 12 9.856 10.990 44.498 1.00 27.56 C
ATOM 21 C6 C B 12 8.944 11.593 45.270 1.00 28.76 C
ATOM 22 P C B 13 3.281 12.639 44.373 1.00 33.15 P
ATOM 23 OP1 C B 13 1.857 12.837 44.724 1.00 33.26 O
ATOM 24 OP2 C B 13 3.782 11.287 44.027 1.00 33.32 O
ATOM 25 O5' C B 13 3.654 13.630 43.175 1.00 33.01 O
TER
Atoms:
OP1: (-0.577,22.067,46.296)
OP2: (1.722,23.178,46.270)
C3': (2.511,18.134,47.304)
C1': (4.004,17.889,45.495)
C5': (0.815,19.479,45.920)
O4': (2.792,18.420,44.995)
C8: (4.804,20.294,45.546)
O2': (3.374,15.921,46.727)
C6: (8.322,20.144,45.552)
C5: (6.915,20.046,45.546)
C4: (6.380,18.773,45.523)
P: (0.822,22.096,45.818)
C4': (1.752,18.287,45.995)
C2': (3.701,17.291,46.865)
C2: (8.371,17.831,45.510)
N1: (9.030,18.995,45.533)
N3: (7.057,17.614,45.505)
N6: (8.977,21.309,45.574)
N7: (5.911,20.999,45.564)
N9: (5.014,18.943,45.523)
O5': (1.517,20.694,46.151)
O3': (1.717,17.447,48.253)
OP2: (1.722,23.178,46.270)
C3': (2.511,18.134,47.304)
C1': (4.004,17.889,45.495)
C5': (0.815,19.479,45.920)
O4': (2.792,18.420,44.995)
C8: (4.804,20.294,45.546)
O2': (3.374,15.921,46.727)
C6: (8.322,20.144,45.552)
C5: (6.915,20.046,45.546)
C4: (6.380,18.773,45.523)
P: (0.822,22.096,45.818)
C4': (1.752,18.287,45.995)
C2': (3.701,17.291,46.865)
C2: (8.371,17.831,45.510)
N1: (9.030,18.995,45.533)
N3: (7.057,17.614,45.505)
N6: (8.977,21.309,45.574)
N7: (5.911,20.999,45.564)
N9: (5.014,18.943,45.523)
O5': (1.517,20.694,46.151)
O3': (1.717,17.447,48.253)
C2: (9.521,13.732,44.347)
OP1: (4.902,8.186,47.363)
OP2: (7.005,7.976,45.903)
C4: (10.623,11.813,43.619)
O5': (6.211,10.200,46.650)
C3': (5.541,12.854,45.667)
C1': (7.741,13.603,46.096)
O4': (7.356,12.706,47.124)
C5': (5.583,11.119,47.534)
P: (6.261,8.640,46.997)
O2: (9.329,14.952,44.321)
C4': (5.918,12.534,47.105)
C2': (6.471,14.022,45.359)
O2': (5.998,15.250,45.876)
N1: (8.759,12.946,45.219)
N3: (10.452,13.133,43.561)
N4: (11.551,11.269,42.824)
C6: (8.944,11.593,45.270)
C5: (9.856,10.990,44.498)
O3': (4.167,13.209,45.578)
OP1: (4.902,8.186,47.363)
OP2: (7.005,7.976,45.903)
C4: (10.623,11.813,43.619)
O5': (6.211,10.200,46.650)
C3': (5.541,12.854,45.667)
C1': (7.741,13.603,46.096)
O4': (7.356,12.706,47.124)
C5': (5.583,11.119,47.534)
P: (6.261,8.640,46.997)
O2: (9.329,14.952,44.321)
C4': (5.918,12.534,47.105)
C2': (6.471,14.022,45.359)
O2': (5.998,15.250,45.876)
N1: (8.759,12.946,45.219)
N3: (10.452,13.133,43.561)
N4: (11.551,11.269,42.824)
C6: (8.944,11.593,45.270)
C5: (9.856,10.990,44.498)
O3': (4.167,13.209,45.578)
Image (generated by PyMOL):