Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:01234:01240
Extra
PDB:
ATOM 1 O3' A A1233 5.011 79.865 68.053 1.00 46.61 O
ATOM 2 P C A1234 5.384 80.062 66.506 1.00 48.35 P
ATOM 3 OP1 C A1234 4.835 78.913 65.746 1.00 47.95 O
ATOM 4 OP2 C A1234 6.838 80.367 66.430 1.00 49.26 O
ATOM 5 O5' C A1234 4.573 81.366 66.092 1.00 47.30 O
ATOM 6 C5' C A1234 3.147 81.345 66.055 1.00 47.53 C
ATOM 7 C4' C A1234 2.610 82.706 65.712 1.00 49.10 C
ATOM 8 O4' C A1234 2.918 83.639 66.777 1.00 51.28 O
ATOM 9 C3' C A1234 3.216 83.364 64.493 1.00 49.47 C
ATOM 10 O3' C A1234 2.688 82.851 63.295 1.00 50.59 O
ATOM 11 C2' C A1234 2.867 84.823 64.723 1.00 50.48 C
ATOM 12 O2' C A1234 1.521 85.122 64.421 1.00 49.84 O
ATOM 13 C1' C A1234 3.104 84.937 66.231 1.00 51.31 C
ATOM 14 N1 C A1234 4.482 85.375 66.518 1.00 52.56 N
ATOM 15 C2 C A1234 4.754 86.750 66.571 1.00 52.92 C
ATOM 16 O2 C A1234 3.816 87.557 66.447 1.00 53.36 O
ATOM 17 N3 C A1234 6.028 87.163 66.761 1.00 52.62 N
ATOM 18 C4 C A1234 7.003 86.267 66.917 1.00 52.57 C
ATOM 19 N4 C A1234 8.244 86.723 67.089 1.00 52.22 N
ATOM 20 C5 C A1234 6.749 84.863 66.902 1.00 52.90 C
ATOM 21 C6 C A1234 5.489 84.465 66.704 1.00 51.84 C
ATOM 22 P U A1235 3.674 82.571 62.070 1.00 53.87 P
ATOM 23 OP1 U A1235 2.874 82.010 60.956 1.00 54.80 O
ATOM 24 OP2 U A1235 4.843 81.810 62.590 1.00 52.03 O
ATOM 25 O5' U A1235 4.150 84.034 61.663 1.00 55.63 O
TER
ATOM 1 O3' A B1239 8.188 98.266 66.485 1.00 88.11 O
ATOM 2 P C B1240 7.505 98.007 67.917 1.00 88.26 P
ATOM 3 OP1 C B1240 7.648 99.242 68.726 1.00 89.64 O
ATOM 4 OP2 C B1240 7.992 96.710 68.463 1.00 88.58 O
ATOM 5 O5' C B1240 5.958 97.854 67.592 1.00 85.18 O
ATOM 6 C5' C B1240 5.086 97.295 68.568 1.00 80.83 C
ATOM 7 C4' C B1240 3.765 96.930 67.953 1.00 77.97 C
ATOM 8 O4' C B1240 3.951 96.047 66.818 1.00 76.19 O
ATOM 9 C3' C B1240 2.920 96.117 68.903 1.00 77.13 C
ATOM 10 O3' C B1240 2.288 96.948 69.843 1.00 76.42 O
ATOM 11 C2' C B1240 1.981 95.375 67.971 1.00 76.60 C
ATOM 12 O2' C B1240 0.896 96.172 67.533 1.00 75.76 O
ATOM 13 C1' C B1240 2.932 95.054 66.814 1.00 76.03 C
ATOM 14 N1 C B1240 3.578 93.729 66.926 1.00 74.95 N
ATOM 15 C2 C B1240 2.781 92.572 66.867 1.00 75.66 C
ATOM 16 O2 C B1240 1.546 92.688 66.774 1.00 76.94 O
ATOM 17 N3 C B1240 3.376 91.359 66.920 1.00 74.95 N
ATOM 18 C4 C B1240 4.702 91.271 67.042 1.00 74.00 C
ATOM 19 N4 C B1240 5.244 90.056 67.073 1.00 73.96 N
ATOM 20 C5 C B1240 5.530 92.426 67.133 1.00 73.77 C
ATOM 21 C6 C B1240 4.934 93.622 67.071 1.00 74.12 C
ATOM 22 P U B1241 2.467 96.628 71.395 1.00 76.38 P
ATOM 23 OP1 U B1241 1.713 97.670 72.133 1.00 77.85 O
ATOM 24 OP2 U B1241 3.916 96.433 71.667 1.00 74.67 O
ATOM 25 O5' U B1241 1.714 95.234 71.551 1.00 74.06 O
TER
ATOM 2 P C A1234 5.384 80.062 66.506 1.00 48.35 P
ATOM 3 OP1 C A1234 4.835 78.913 65.746 1.00 47.95 O
ATOM 4 OP2 C A1234 6.838 80.367 66.430 1.00 49.26 O
ATOM 5 O5' C A1234 4.573 81.366 66.092 1.00 47.30 O
ATOM 6 C5' C A1234 3.147 81.345 66.055 1.00 47.53 C
ATOM 7 C4' C A1234 2.610 82.706 65.712 1.00 49.10 C
ATOM 8 O4' C A1234 2.918 83.639 66.777 1.00 51.28 O
ATOM 9 C3' C A1234 3.216 83.364 64.493 1.00 49.47 C
ATOM 10 O3' C A1234 2.688 82.851 63.295 1.00 50.59 O
ATOM 11 C2' C A1234 2.867 84.823 64.723 1.00 50.48 C
ATOM 12 O2' C A1234 1.521 85.122 64.421 1.00 49.84 O
ATOM 13 C1' C A1234 3.104 84.937 66.231 1.00 51.31 C
ATOM 14 N1 C A1234 4.482 85.375 66.518 1.00 52.56 N
ATOM 15 C2 C A1234 4.754 86.750 66.571 1.00 52.92 C
ATOM 16 O2 C A1234 3.816 87.557 66.447 1.00 53.36 O
ATOM 17 N3 C A1234 6.028 87.163 66.761 1.00 52.62 N
ATOM 18 C4 C A1234 7.003 86.267 66.917 1.00 52.57 C
ATOM 19 N4 C A1234 8.244 86.723 67.089 1.00 52.22 N
ATOM 20 C5 C A1234 6.749 84.863 66.902 1.00 52.90 C
ATOM 21 C6 C A1234 5.489 84.465 66.704 1.00 51.84 C
ATOM 22 P U A1235 3.674 82.571 62.070 1.00 53.87 P
ATOM 23 OP1 U A1235 2.874 82.010 60.956 1.00 54.80 O
ATOM 24 OP2 U A1235 4.843 81.810 62.590 1.00 52.03 O
ATOM 25 O5' U A1235 4.150 84.034 61.663 1.00 55.63 O
TER
ATOM 1 O3' A B1239 8.188 98.266 66.485 1.00 88.11 O
ATOM 2 P C B1240 7.505 98.007 67.917 1.00 88.26 P
ATOM 3 OP1 C B1240 7.648 99.242 68.726 1.00 89.64 O
ATOM 4 OP2 C B1240 7.992 96.710 68.463 1.00 88.58 O
ATOM 5 O5' C B1240 5.958 97.854 67.592 1.00 85.18 O
ATOM 6 C5' C B1240 5.086 97.295 68.568 1.00 80.83 C
ATOM 7 C4' C B1240 3.765 96.930 67.953 1.00 77.97 C
ATOM 8 O4' C B1240 3.951 96.047 66.818 1.00 76.19 O
ATOM 9 C3' C B1240 2.920 96.117 68.903 1.00 77.13 C
ATOM 10 O3' C B1240 2.288 96.948 69.843 1.00 76.42 O
ATOM 11 C2' C B1240 1.981 95.375 67.971 1.00 76.60 C
ATOM 12 O2' C B1240 0.896 96.172 67.533 1.00 75.76 O
ATOM 13 C1' C B1240 2.932 95.054 66.814 1.00 76.03 C
ATOM 14 N1 C B1240 3.578 93.729 66.926 1.00 74.95 N
ATOM 15 C2 C B1240 2.781 92.572 66.867 1.00 75.66 C
ATOM 16 O2 C B1240 1.546 92.688 66.774 1.00 76.94 O
ATOM 17 N3 C B1240 3.376 91.359 66.920 1.00 74.95 N
ATOM 18 C4 C B1240 4.702 91.271 67.042 1.00 74.00 C
ATOM 19 N4 C B1240 5.244 90.056 67.073 1.00 73.96 N
ATOM 20 C5 C B1240 5.530 92.426 67.133 1.00 73.77 C
ATOM 21 C6 C B1240 4.934 93.622 67.071 1.00 74.12 C
ATOM 22 P U B1241 2.467 96.628 71.395 1.00 76.38 P
ATOM 23 OP1 U B1241 1.713 97.670 72.133 1.00 77.85 O
ATOM 24 OP2 U B1241 3.916 96.433 71.667 1.00 74.67 O
ATOM 25 O5' U B1241 1.714 95.234 71.551 1.00 74.06 O
TER
Atoms:
C2: (4.754,86.750,66.571)
OP1: (4.835,78.913,65.746)
OP2: (6.838,80.367,66.430)
C4: (7.003,86.267,66.917)
O5': (4.573,81.366,66.092)
C3': (3.216,83.364,64.493)
C1': (3.104,84.937,66.231)
O4': (2.918,83.639,66.777)
C5': (3.147,81.345,66.055)
P: (5.384,80.062,66.506)
O2: (3.816,87.557,66.447)
C4': (2.610,82.706,65.712)
C2': (2.867,84.823,64.723)
O2': (1.521,85.122,64.421)
N1: (4.482,85.375,66.518)
N3: (6.028,87.163,66.761)
N4: (8.244,86.723,67.089)
C6: (5.489,84.465,66.704)
C5: (6.749,84.863,66.902)
O3': (2.688,82.851,63.295)
OP1: (4.835,78.913,65.746)
OP2: (6.838,80.367,66.430)
C4: (7.003,86.267,66.917)
O5': (4.573,81.366,66.092)
C3': (3.216,83.364,64.493)
C1': (3.104,84.937,66.231)
O4': (2.918,83.639,66.777)
C5': (3.147,81.345,66.055)
P: (5.384,80.062,66.506)
O2: (3.816,87.557,66.447)
C4': (2.610,82.706,65.712)
C2': (2.867,84.823,64.723)
O2': (1.521,85.122,64.421)
N1: (4.482,85.375,66.518)
N3: (6.028,87.163,66.761)
N4: (8.244,86.723,67.089)
C6: (5.489,84.465,66.704)
C5: (6.749,84.863,66.902)
O3': (2.688,82.851,63.295)
C2: (2.781,92.572,66.867)
OP1: (7.648,99.242,68.726)
OP2: (7.992,96.710,68.463)
C4: (4.702,91.271,67.042)
O5': (5.958,97.854,67.592)
C3': (2.920,96.117,68.903)
C1': (2.932,95.054,66.814)
O4': (3.951,96.047,66.818)
C5': (5.086,97.295,68.568)
P: (7.505,98.007,67.917)
O2: (1.546,92.688,66.774)
C4': (3.765,96.930,67.953)
C2': (1.981,95.375,67.971)
O2': (0.896,96.172,67.533)
N1: (3.578,93.729,66.926)
N3: (3.376,91.359,66.920)
N4: (5.244,90.056,67.073)
C6: (4.934,93.622,67.071)
C5: (5.530,92.426,67.133)
O3': (2.288,96.948,69.843)
OP1: (7.648,99.242,68.726)
OP2: (7.992,96.710,68.463)
C4: (4.702,91.271,67.042)
O5': (5.958,97.854,67.592)
C3': (2.920,96.117,68.903)
C1': (2.932,95.054,66.814)
O4': (3.951,96.047,66.818)
C5': (5.086,97.295,68.568)
P: (7.505,98.007,67.917)
O2: (1.546,92.688,66.774)
C4': (3.765,96.930,67.953)
C2': (1.981,95.375,67.971)
O2': (0.896,96.172,67.533)
N1: (3.578,93.729,66.926)
N3: (3.376,91.359,66.920)
N4: (5.244,90.056,67.073)
C6: (4.934,93.622,67.071)
C5: (5.530,92.426,67.133)
O3': (2.288,96.948,69.843)
Image (generated by PyMOL):