Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.397 98.546 121.956 1.00 66.66 O
ATOM 2 P C A 559 -4.852 97.653 123.217 1.00 68.74 P
ATOM 3 OP1 C A 559 -4.325 98.316 124.435 1.00 67.95 O
ATOM 4 OP2 C A 559 -4.512 96.228 122.949 1.00 65.58 O
ATOM 5 O5' C A 559 -6.437 97.790 123.228 1.00 69.67 O
ATOM 6 C5' C A 559 -7.075 99.070 123.403 1.00 71.92 C
ATOM 7 C4' C A 559 -8.567 98.932 123.214 1.00 74.11 C
ATOM 8 O4' C A 559 -8.834 98.506 121.850 1.00 73.23 O
ATOM 9 C3' C A 559 -9.222 97.859 124.072 1.00 76.40 C
ATOM 10 O3' C A 559 -9.506 98.318 125.395 1.00 79.01 O
ATOM 11 C2' C A 559 -10.468 97.513 123.266 1.00 75.12 C
ATOM 12 O2' C A 559 -11.513 98.452 123.435 1.00 75.65 O
ATOM 13 C1' C A 559 -9.928 97.600 121.835 1.00 72.80 C
ATOM 14 N1 C A 559 -9.458 96.307 121.295 1.00 71.00 N
ATOM 15 C2 C A 559 -10.372 95.479 120.615 1.00 70.86 C
ATOM 16 O2 C A 559 -11.550 95.851 120.488 1.00 71.87 O
ATOM 17 N3 C A 559 -9.943 94.295 120.113 1.00 69.29 N
ATOM 18 C4 C A 559 -8.668 93.926 120.267 1.00 67.77 C
ATOM 19 N4 C A 559 -8.290 92.752 119.752 1.00 66.32 N
ATOM 20 C5 C A 559 -7.723 94.744 120.955 1.00 67.75 C
ATOM 21 C6 C A 559 -8.156 95.913 121.448 1.00 69.20 C
ATOM 22 P G A 560 -9.338 97.311 126.641 1.00 81.18 P
ATOM 23 OP1 G A 560 -9.776 98.053 127.849 1.00 80.75 O
ATOM 24 OP2 G A 560 -7.975 96.719 126.603 1.00 80.61 O
ATOM 25 O5' G A 560 -10.396 96.155 126.340 1.00 81.38 O
TER
ATOM 1 O3' C B 573 -10.769 83.559 116.311 1.00 65.46 O
ATOM 2 P C B 574 -10.781 84.359 114.915 1.00 65.99 P
ATOM 3 OP1 C B 574 -11.819 83.744 114.050 1.00 65.40 O
ATOM 4 OP2 C B 574 -9.382 84.438 114.429 1.00 67.51 O
ATOM 5 O5' C B 574 -11.271 85.825 115.307 1.00 64.72 O
ATOM 6 C5' C B 574 -12.624 86.061 115.716 1.00 63.71 C
ATOM 7 C4' C B 574 -12.764 87.447 116.294 1.00 65.15 C
ATOM 8 O4' C B 574 -11.851 87.600 117.410 1.00 66.37 O
ATOM 9 C3' C B 574 -12.408 88.601 115.375 1.00 66.27 C
ATOM 10 O3' C B 574 -13.497 88.921 114.514 1.00 68.46 O
ATOM 11 C2' C B 574 -12.114 89.723 116.365 1.00 66.38 C
ATOM 12 O2' C B 574 -13.281 90.338 116.874 1.00 66.15 O
ATOM 13 C1' C B 574 -11.426 88.954 117.496 1.00 66.10 C
ATOM 14 N1 C B 574 -9.947 89.000 117.451 1.00 65.92 N
ATOM 15 C2 C B 574 -9.278 90.093 118.046 1.00 65.44 C
ATOM 16 O2 C B 574 -9.946 91.002 118.575 1.00 63.62 O
ATOM 17 N3 C B 574 -7.924 90.128 118.019 1.00 65.00 N
ATOM 18 C4 C B 574 -7.240 89.144 117.422 1.00 65.21 C
ATOM 19 N4 C B 574 -5.906 89.225 117.410 1.00 64.92 N
ATOM 20 C5 C B 574 -7.893 88.034 116.807 1.00 64.49 C
ATOM 21 C6 C B 574 -9.230 88.001 116.846 1.00 65.23 C
ATOM 22 P A B 575 -13.212 89.480 113.033 1.00 69.70 P
ATOM 23 OP1 A B 575 -12.623 90.839 113.158 1.00 69.45 O
ATOM 24 OP2 A B 575 -14.465 89.298 112.254 1.00 70.64 O
ATOM 25 O5' A B 575 -12.114 88.483 112.443 1.00 66.96 O
TER
ATOM 2 P C A 559 -4.852 97.653 123.217 1.00 68.74 P
ATOM 3 OP1 C A 559 -4.325 98.316 124.435 1.00 67.95 O
ATOM 4 OP2 C A 559 -4.512 96.228 122.949 1.00 65.58 O
ATOM 5 O5' C A 559 -6.437 97.790 123.228 1.00 69.67 O
ATOM 6 C5' C A 559 -7.075 99.070 123.403 1.00 71.92 C
ATOM 7 C4' C A 559 -8.567 98.932 123.214 1.00 74.11 C
ATOM 8 O4' C A 559 -8.834 98.506 121.850 1.00 73.23 O
ATOM 9 C3' C A 559 -9.222 97.859 124.072 1.00 76.40 C
ATOM 10 O3' C A 559 -9.506 98.318 125.395 1.00 79.01 O
ATOM 11 C2' C A 559 -10.468 97.513 123.266 1.00 75.12 C
ATOM 12 O2' C A 559 -11.513 98.452 123.435 1.00 75.65 O
ATOM 13 C1' C A 559 -9.928 97.600 121.835 1.00 72.80 C
ATOM 14 N1 C A 559 -9.458 96.307 121.295 1.00 71.00 N
ATOM 15 C2 C A 559 -10.372 95.479 120.615 1.00 70.86 C
ATOM 16 O2 C A 559 -11.550 95.851 120.488 1.00 71.87 O
ATOM 17 N3 C A 559 -9.943 94.295 120.113 1.00 69.29 N
ATOM 18 C4 C A 559 -8.668 93.926 120.267 1.00 67.77 C
ATOM 19 N4 C A 559 -8.290 92.752 119.752 1.00 66.32 N
ATOM 20 C5 C A 559 -7.723 94.744 120.955 1.00 67.75 C
ATOM 21 C6 C A 559 -8.156 95.913 121.448 1.00 69.20 C
ATOM 22 P G A 560 -9.338 97.311 126.641 1.00 81.18 P
ATOM 23 OP1 G A 560 -9.776 98.053 127.849 1.00 80.75 O
ATOM 24 OP2 G A 560 -7.975 96.719 126.603 1.00 80.61 O
ATOM 25 O5' G A 560 -10.396 96.155 126.340 1.00 81.38 O
TER
ATOM 1 O3' C B 573 -10.769 83.559 116.311 1.00 65.46 O
ATOM 2 P C B 574 -10.781 84.359 114.915 1.00 65.99 P
ATOM 3 OP1 C B 574 -11.819 83.744 114.050 1.00 65.40 O
ATOM 4 OP2 C B 574 -9.382 84.438 114.429 1.00 67.51 O
ATOM 5 O5' C B 574 -11.271 85.825 115.307 1.00 64.72 O
ATOM 6 C5' C B 574 -12.624 86.061 115.716 1.00 63.71 C
ATOM 7 C4' C B 574 -12.764 87.447 116.294 1.00 65.15 C
ATOM 8 O4' C B 574 -11.851 87.600 117.410 1.00 66.37 O
ATOM 9 C3' C B 574 -12.408 88.601 115.375 1.00 66.27 C
ATOM 10 O3' C B 574 -13.497 88.921 114.514 1.00 68.46 O
ATOM 11 C2' C B 574 -12.114 89.723 116.365 1.00 66.38 C
ATOM 12 O2' C B 574 -13.281 90.338 116.874 1.00 66.15 O
ATOM 13 C1' C B 574 -11.426 88.954 117.496 1.00 66.10 C
ATOM 14 N1 C B 574 -9.947 89.000 117.451 1.00 65.92 N
ATOM 15 C2 C B 574 -9.278 90.093 118.046 1.00 65.44 C
ATOM 16 O2 C B 574 -9.946 91.002 118.575 1.00 63.62 O
ATOM 17 N3 C B 574 -7.924 90.128 118.019 1.00 65.00 N
ATOM 18 C4 C B 574 -7.240 89.144 117.422 1.00 65.21 C
ATOM 19 N4 C B 574 -5.906 89.225 117.410 1.00 64.92 N
ATOM 20 C5 C B 574 -7.893 88.034 116.807 1.00 64.49 C
ATOM 21 C6 C B 574 -9.230 88.001 116.846 1.00 65.23 C
ATOM 22 P A B 575 -13.212 89.480 113.033 1.00 69.70 P
ATOM 23 OP1 A B 575 -12.623 90.839 113.158 1.00 69.45 O
ATOM 24 OP2 A B 575 -14.465 89.298 112.254 1.00 70.64 O
ATOM 25 O5' A B 575 -12.114 88.483 112.443 1.00 66.96 O
TER
Atoms:
C2: (-10.372,95.479,120.615)
OP1: (-4.325,98.316,124.435)
OP2: (-4.512,96.228,122.949)
C4: (-8.668,93.926,120.267)
O5': (-6.437,97.790,123.228)
C3': (-9.222,97.859,124.072)
C1': (-9.928,97.600,121.835)
O4': (-8.834,98.506,121.850)
C5': (-7.075,99.070,123.403)
P: (-4.852,97.653,123.217)
O2: (-11.550,95.851,120.488)
C4': (-8.567,98.932,123.214)
C2': (-10.468,97.513,123.266)
O2': (-11.513,98.452,123.435)
N1: (-9.458,96.307,121.295)
N3: (-9.943,94.295,120.113)
N4: (-8.290,92.752,119.752)
C6: (-8.156,95.913,121.448)
C5: (-7.723,94.744,120.955)
O3': (-9.506,98.318,125.395)
OP1: (-4.325,98.316,124.435)
OP2: (-4.512,96.228,122.949)
C4: (-8.668,93.926,120.267)
O5': (-6.437,97.790,123.228)
C3': (-9.222,97.859,124.072)
C1': (-9.928,97.600,121.835)
O4': (-8.834,98.506,121.850)
C5': (-7.075,99.070,123.403)
P: (-4.852,97.653,123.217)
O2: (-11.550,95.851,120.488)
C4': (-8.567,98.932,123.214)
C2': (-10.468,97.513,123.266)
O2': (-11.513,98.452,123.435)
N1: (-9.458,96.307,121.295)
N3: (-9.943,94.295,120.113)
N4: (-8.290,92.752,119.752)
C6: (-8.156,95.913,121.448)
C5: (-7.723,94.744,120.955)
O3': (-9.506,98.318,125.395)
C2: (-9.278,90.093,118.046)
OP1: (-11.819,83.744,114.050)
OP2: (-9.382,84.438,114.429)
C4: (-7.240,89.144,117.422)
O5': (-11.271,85.825,115.307)
C3': (-12.408,88.601,115.375)
C1': (-11.426,88.954,117.496)
O4': (-11.851,87.600,117.410)
C5': (-12.624,86.061,115.716)
P: (-10.781,84.359,114.915)
O2: (-9.946,91.002,118.575)
C4': (-12.764,87.447,116.294)
C2': (-12.114,89.723,116.365)
O2': (-13.281,90.338,116.874)
N1: (-9.947,89.000,117.451)
N3: (-7.924,90.128,118.019)
N4: (-5.906,89.225,117.410)
C6: (-9.230,88.001,116.846)
C5: (-7.893,88.034,116.807)
O3': (-13.497,88.921,114.514)
OP1: (-11.819,83.744,114.050)
OP2: (-9.382,84.438,114.429)
C4: (-7.240,89.144,117.422)
O5': (-11.271,85.825,115.307)
C3': (-12.408,88.601,115.375)
C1': (-11.426,88.954,117.496)
O4': (-11.851,87.600,117.410)
C5': (-12.624,86.061,115.716)
P: (-10.781,84.359,114.915)
O2: (-9.946,91.002,118.575)
C4': (-12.764,87.447,116.294)
C2': (-12.114,89.723,116.365)
O2': (-13.281,90.338,116.874)
N1: (-9.947,89.000,117.451)
N3: (-7.924,90.128,118.019)
N4: (-5.906,89.225,117.410)
C6: (-9.230,88.001,116.846)
C5: (-7.893,88.034,116.807)
O3': (-13.497,88.921,114.514)
Image (generated by PyMOL):