Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQL:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.441 98.123 121.922 1.00 69.07 O
ATOM 2 P C A 559 -4.769 97.220 123.213 1.00 70.87 P
ATOM 3 OP1 C A 559 -4.151 97.875 124.394 1.00 70.97 O
ATOM 4 OP2 C A 559 -4.445 95.798 122.904 1.00 68.71 O
ATOM 5 O5' C A 559 -6.347 97.339 123.364 1.00 71.63 O
ATOM 6 C5' C A 559 -6.985 98.615 123.529 1.00 72.47 C
ATOM 7 C4' C A 559 -8.472 98.469 123.331 1.00 74.51 C
ATOM 8 O4' C A 559 -8.732 98.043 121.966 1.00 73.12 O
ATOM 9 C3' C A 559 -9.116 97.384 124.177 1.00 76.25 C
ATOM 10 O3' C A 559 -9.395 97.830 125.502 1.00 79.07 O
ATOM 11 C2' C A 559 -10.365 97.046 123.377 1.00 75.04 C
ATOM 12 O2' C A 559 -11.392 97.997 123.571 1.00 76.50 O
ATOM 13 C1' C A 559 -9.836 97.151 121.943 1.00 72.51 C
ATOM 14 N1 C A 559 -9.395 95.864 121.363 1.00 70.07 N
ATOM 15 C2 C A 559 -10.345 95.046 120.724 1.00 69.32 C
ATOM 16 O2 C A 559 -11.529 95.424 120.666 1.00 70.39 O
ATOM 17 N3 C A 559 -9.948 93.865 120.187 1.00 67.18 N
ATOM 18 C4 C A 559 -8.668 93.489 120.269 1.00 66.31 C
ATOM 19 N4 C A 559 -8.321 92.316 119.726 1.00 63.34 N
ATOM 20 C5 C A 559 -7.685 94.300 120.911 1.00 67.03 C
ATOM 21 C6 C A 559 -8.087 95.466 121.439 1.00 68.36 C
ATOM 22 P G A 560 -9.238 96.805 126.732 1.00 81.48 P
ATOM 23 OP1 G A 560 -9.640 97.538 127.960 1.00 80.48 O
ATOM 24 OP2 G A 560 -7.890 96.182 126.663 1.00 80.71 O
ATOM 25 O5' G A 560 -10.324 95.678 126.417 1.00 81.91 O
TER
ATOM 1 O3' C B 573 -10.596 83.176 116.351 1.00 69.70 O
ATOM 2 P C B 574 -10.505 83.924 114.931 1.00 69.70 P
ATOM 3 OP1 C B 574 -11.372 83.198 113.968 1.00 69.18 O
ATOM 4 OP2 C B 574 -9.063 84.106 114.618 1.00 71.79 O
ATOM 5 O5' C B 574 -11.127 85.363 115.216 1.00 67.42 O
ATOM 6 C5' C B 574 -12.493 85.515 115.623 1.00 65.80 C
ATOM 7 C4' C B 574 -12.709 86.888 116.206 1.00 66.96 C
ATOM 8 O4' C B 574 -11.861 87.056 117.372 1.00 68.40 O
ATOM 9 C3' C B 574 -12.331 88.047 115.304 1.00 68.34 C
ATOM 10 O3' C B 574 -13.383 88.339 114.394 1.00 70.89 O
ATOM 11 C2' C B 574 -12.079 89.170 116.306 1.00 68.38 C
ATOM 12 O2' C B 574 -13.262 89.774 116.785 1.00 68.74 O
ATOM 13 C1' C B 574 -11.415 88.404 117.454 1.00 67.42 C
ATOM 14 N1 C B 574 -9.936 88.417 117.401 1.00 65.96 N
ATOM 15 C2 C B 574 -9.236 89.506 117.966 1.00 65.87 C
ATOM 16 O2 C B 574 -9.874 90.439 118.494 1.00 65.15 O
ATOM 17 N3 C B 574 -7.883 89.515 117.913 1.00 64.98 N
ATOM 18 C4 C B 574 -7.229 88.510 117.321 1.00 65.03 C
ATOM 19 N4 C B 574 -5.894 88.569 117.277 1.00 64.42 N
ATOM 20 C5 C B 574 -7.914 87.400 116.742 1.00 64.57 C
ATOM 21 C6 C B 574 -9.249 87.393 116.807 1.00 65.08 C
ATOM 22 P A B 575 -13.043 88.857 112.910 1.00 71.73 P
ATOM 23 OP1 A B 575 -12.430 90.207 113.020 1.00 71.71 O
ATOM 24 OP2 A B 575 -14.270 88.677 112.092 1.00 72.69 O
ATOM 25 O5' A B 575 -11.955 87.829 112.363 1.00 70.09 O
TER
ATOM 2 P C A 559 -4.769 97.220 123.213 1.00 70.87 P
ATOM 3 OP1 C A 559 -4.151 97.875 124.394 1.00 70.97 O
ATOM 4 OP2 C A 559 -4.445 95.798 122.904 1.00 68.71 O
ATOM 5 O5' C A 559 -6.347 97.339 123.364 1.00 71.63 O
ATOM 6 C5' C A 559 -6.985 98.615 123.529 1.00 72.47 C
ATOM 7 C4' C A 559 -8.472 98.469 123.331 1.00 74.51 C
ATOM 8 O4' C A 559 -8.732 98.043 121.966 1.00 73.12 O
ATOM 9 C3' C A 559 -9.116 97.384 124.177 1.00 76.25 C
ATOM 10 O3' C A 559 -9.395 97.830 125.502 1.00 79.07 O
ATOM 11 C2' C A 559 -10.365 97.046 123.377 1.00 75.04 C
ATOM 12 O2' C A 559 -11.392 97.997 123.571 1.00 76.50 O
ATOM 13 C1' C A 559 -9.836 97.151 121.943 1.00 72.51 C
ATOM 14 N1 C A 559 -9.395 95.864 121.363 1.00 70.07 N
ATOM 15 C2 C A 559 -10.345 95.046 120.724 1.00 69.32 C
ATOM 16 O2 C A 559 -11.529 95.424 120.666 1.00 70.39 O
ATOM 17 N3 C A 559 -9.948 93.865 120.187 1.00 67.18 N
ATOM 18 C4 C A 559 -8.668 93.489 120.269 1.00 66.31 C
ATOM 19 N4 C A 559 -8.321 92.316 119.726 1.00 63.34 N
ATOM 20 C5 C A 559 -7.685 94.300 120.911 1.00 67.03 C
ATOM 21 C6 C A 559 -8.087 95.466 121.439 1.00 68.36 C
ATOM 22 P G A 560 -9.238 96.805 126.732 1.00 81.48 P
ATOM 23 OP1 G A 560 -9.640 97.538 127.960 1.00 80.48 O
ATOM 24 OP2 G A 560 -7.890 96.182 126.663 1.00 80.71 O
ATOM 25 O5' G A 560 -10.324 95.678 126.417 1.00 81.91 O
TER
ATOM 1 O3' C B 573 -10.596 83.176 116.351 1.00 69.70 O
ATOM 2 P C B 574 -10.505 83.924 114.931 1.00 69.70 P
ATOM 3 OP1 C B 574 -11.372 83.198 113.968 1.00 69.18 O
ATOM 4 OP2 C B 574 -9.063 84.106 114.618 1.00 71.79 O
ATOM 5 O5' C B 574 -11.127 85.363 115.216 1.00 67.42 O
ATOM 6 C5' C B 574 -12.493 85.515 115.623 1.00 65.80 C
ATOM 7 C4' C B 574 -12.709 86.888 116.206 1.00 66.96 C
ATOM 8 O4' C B 574 -11.861 87.056 117.372 1.00 68.40 O
ATOM 9 C3' C B 574 -12.331 88.047 115.304 1.00 68.34 C
ATOM 10 O3' C B 574 -13.383 88.339 114.394 1.00 70.89 O
ATOM 11 C2' C B 574 -12.079 89.170 116.306 1.00 68.38 C
ATOM 12 O2' C B 574 -13.262 89.774 116.785 1.00 68.74 O
ATOM 13 C1' C B 574 -11.415 88.404 117.454 1.00 67.42 C
ATOM 14 N1 C B 574 -9.936 88.417 117.401 1.00 65.96 N
ATOM 15 C2 C B 574 -9.236 89.506 117.966 1.00 65.87 C
ATOM 16 O2 C B 574 -9.874 90.439 118.494 1.00 65.15 O
ATOM 17 N3 C B 574 -7.883 89.515 117.913 1.00 64.98 N
ATOM 18 C4 C B 574 -7.229 88.510 117.321 1.00 65.03 C
ATOM 19 N4 C B 574 -5.894 88.569 117.277 1.00 64.42 N
ATOM 20 C5 C B 574 -7.914 87.400 116.742 1.00 64.57 C
ATOM 21 C6 C B 574 -9.249 87.393 116.807 1.00 65.08 C
ATOM 22 P A B 575 -13.043 88.857 112.910 1.00 71.73 P
ATOM 23 OP1 A B 575 -12.430 90.207 113.020 1.00 71.71 O
ATOM 24 OP2 A B 575 -14.270 88.677 112.092 1.00 72.69 O
ATOM 25 O5' A B 575 -11.955 87.829 112.363 1.00 70.09 O
TER
Atoms:
C2: (-10.345,95.046,120.724)
OP1: (-4.151,97.875,124.394)
OP2: (-4.445,95.798,122.904)
C4: (-8.668,93.489,120.269)
O5': (-6.347,97.339,123.364)
C3': (-9.116,97.384,124.177)
C1': (-9.836,97.151,121.943)
O4': (-8.732,98.043,121.966)
C5': (-6.985,98.615,123.529)
P: (-4.769,97.220,123.213)
O2: (-11.529,95.424,120.666)
C4': (-8.472,98.469,123.331)
C2': (-10.365,97.046,123.377)
O2': (-11.392,97.997,123.571)
N1: (-9.395,95.864,121.363)
N3: (-9.948,93.865,120.187)
N4: (-8.321,92.316,119.726)
C6: (-8.087,95.466,121.439)
C5: (-7.685,94.300,120.911)
O3': (-9.395,97.830,125.502)
OP1: (-4.151,97.875,124.394)
OP2: (-4.445,95.798,122.904)
C4: (-8.668,93.489,120.269)
O5': (-6.347,97.339,123.364)
C3': (-9.116,97.384,124.177)
C1': (-9.836,97.151,121.943)
O4': (-8.732,98.043,121.966)
C5': (-6.985,98.615,123.529)
P: (-4.769,97.220,123.213)
O2: (-11.529,95.424,120.666)
C4': (-8.472,98.469,123.331)
C2': (-10.365,97.046,123.377)
O2': (-11.392,97.997,123.571)
N1: (-9.395,95.864,121.363)
N3: (-9.948,93.865,120.187)
N4: (-8.321,92.316,119.726)
C6: (-8.087,95.466,121.439)
C5: (-7.685,94.300,120.911)
O3': (-9.395,97.830,125.502)
C2: (-9.236,89.506,117.966)
OP1: (-11.372,83.198,113.968)
OP2: (-9.063,84.106,114.618)
C4: (-7.229,88.510,117.321)
O5': (-11.127,85.363,115.216)
C3': (-12.331,88.047,115.304)
C1': (-11.415,88.404,117.454)
O4': (-11.861,87.056,117.372)
C5': (-12.493,85.515,115.623)
P: (-10.505,83.924,114.931)
O2: (-9.874,90.439,118.494)
C4': (-12.709,86.888,116.206)
C2': (-12.079,89.170,116.306)
O2': (-13.262,89.774,116.785)
N1: (-9.936,88.417,117.401)
N3: (-7.883,89.515,117.913)
N4: (-5.894,88.569,117.277)
C6: (-9.249,87.393,116.807)
C5: (-7.914,87.400,116.742)
O3': (-13.383,88.339,114.394)
OP1: (-11.372,83.198,113.968)
OP2: (-9.063,84.106,114.618)
C4: (-7.229,88.510,117.321)
O5': (-11.127,85.363,115.216)
C3': (-12.331,88.047,115.304)
C1': (-11.415,88.404,117.454)
O4': (-11.861,87.056,117.372)
C5': (-12.493,85.515,115.623)
P: (-10.505,83.924,114.931)
O2: (-9.874,90.439,118.494)
C4': (-12.709,86.888,116.206)
C2': (-12.079,89.170,116.306)
O2': (-13.262,89.774,116.785)
N1: (-9.936,88.417,117.401)
N3: (-7.883,89.515,117.913)
N4: (-5.894,88.569,117.277)
C6: (-9.249,87.393,116.807)
C5: (-7.914,87.400,116.742)
O3': (-13.383,88.339,114.394)
Image (generated by PyMOL):