Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1324:124
Extra
PDB:
ATOM 1 O3' U A 323 68.117 -30.629 109.709 1.00 49.98 O
ATOM 2 P A A 324 68.559 -29.145 109.288 1.00 42.47 P
ATOM 3 OP1 A A 324 68.698 -29.123 107.808 1.00 42.07 O
ATOM 4 OP2 A A 324 69.705 -28.789 110.100 1.00 42.85 O
ATOM 5 O5' A A 324 67.313 -28.277 109.719 1.00 42.30 O
ATOM 6 C5' A A 324 66.073 -28.434 109.070 1.00 41.94 C
ATOM 7 C4' A A 324 65.054 -27.496 109.633 1.00 41.85 C
ATOM 8 O4' A A 324 64.936 -27.715 111.036 1.00 42.27 O
ATOM 9 C3' A A 324 65.377 -26.025 109.522 1.00 41.71 C
ATOM 10 O3' A A 324 65.022 -25.505 108.271 1.00 41.25 O
ATOM 11 C2' A A 324 64.558 -25.428 110.629 1.00 41.86 C
ATOM 12 O2' A A 324 63.212 -25.311 110.220 1.00 41.54 O
ATOM 13 C1' A A 324 64.635 -26.510 111.678 1.00 42.29 C
ATOM 14 N9 A A 324 65.669 -26.249 112.674 1.00 42.72 N
ATOM 15 C8 A A 324 66.817 -26.966 112.848 1.00 43.02 C
ATOM 16 N7 A A 324 67.502 -26.522 113.858 1.00 43.40 N
ATOM 17 C5 A A 324 66.746 -25.477 114.357 1.00 43.33 C
ATOM 18 C6 A A 324 66.947 -24.628 115.417 1.00 43.63 C
ATOM 19 N6 A A 324 68.048 -24.765 116.136 1.00 44.05 N
ATOM 20 N1 A A 324 66.041 -23.669 115.682 1.00 43.49 N
ATOM 21 C2 A A 324 64.967 -23.599 114.914 1.00 43.08 C
ATOM 22 N3 A A 324 64.638 -24.363 113.873 1.00 42.77 N
ATOM 23 C4 A A 324 65.597 -25.290 113.649 1.00 42.92 C
ATOM 24 P U A 325 66.086 -24.726 107.391 1.00 52.40 P
ATOM 25 OP1 U A 325 65.623 -24.807 106.002 1.00 51.96 O
ATOM 26 OP2 U A 325 67.394 -25.268 107.725 1.00 52.74 O
ATOM 27 O5' U A 325 65.945 -23.244 107.929 1.00 52.40 O
TER
ATOM 1 O3' A B 23 59.811 -18.362 108.682 1.00 46.03 O
ATOM 2 P C B 24 58.830 -19.588 109.008 1.00 42.11 P
ATOM 3 OP1 C B 24 58.609 -20.277 107.716 1.00 41.76 O
ATOM 4 OP2 C B 24 57.652 -19.041 109.757 1.00 42.16 O
ATOM 5 O5' C B 24 59.694 -20.513 109.969 1.00 42.54 O
ATOM 6 C5' C B 24 60.637 -21.420 109.437 1.00 42.56 C
ATOM 7 C4' C B 24 61.375 -22.137 110.521 1.00 43.01 C
ATOM 8 O4' C B 24 61.992 -21.169 111.409 1.00 43.29 O
ATOM 9 C3' C B 24 60.529 -22.993 111.427 1.00 43.25 C
ATOM 10 O3' C B 24 60.294 -24.268 110.888 1.00 43.17 O
ATOM 11 C2' C B 24 61.329 -23.039 112.707 1.00 43.74 C
ATOM 12 O2' C B 24 62.326 -24.039 112.602 1.00 43.92 O
ATOM 13 C1' C B 24 62.010 -21.661 112.727 1.00 43.72 C
ATOM 14 N1 C B 24 61.308 -20.688 113.598 1.00 43.84 N
ATOM 15 C2 C B 24 61.553 -20.677 114.966 1.00 44.31 C
ATOM 16 O2 C B 24 62.346 -21.489 115.435 1.00 44.62 O
ATOM 17 N3 C B 24 60.931 -19.789 115.764 1.00 44.43 N
ATOM 18 C4 C B 24 60.073 -18.941 115.228 1.00 44.11 C
ATOM 19 N4 C B 24 59.493 -18.079 116.059 1.00 44.26 N
ATOM 20 C5 C B 24 59.805 -18.911 113.843 1.00 43.63 C
ATOM 21 C6 C B 24 60.439 -19.783 113.077 1.00 43.51 C
ATOM 22 P C B 25 58.810 -24.899 110.959 1.00 37.49 P
ATOM 23 OP1 C B 25 58.853 -26.212 110.253 1.00 37.41 O
ATOM 24 OP2 C B 25 57.878 -23.855 110.477 1.00 37.15 O
ATOM 25 O5' C B 25 58.605 -25.118 112.516 1.00 37.95 O
TER
ATOM 2 P A A 324 68.559 -29.145 109.288 1.00 42.47 P
ATOM 3 OP1 A A 324 68.698 -29.123 107.808 1.00 42.07 O
ATOM 4 OP2 A A 324 69.705 -28.789 110.100 1.00 42.85 O
ATOM 5 O5' A A 324 67.313 -28.277 109.719 1.00 42.30 O
ATOM 6 C5' A A 324 66.073 -28.434 109.070 1.00 41.94 C
ATOM 7 C4' A A 324 65.054 -27.496 109.633 1.00 41.85 C
ATOM 8 O4' A A 324 64.936 -27.715 111.036 1.00 42.27 O
ATOM 9 C3' A A 324 65.377 -26.025 109.522 1.00 41.71 C
ATOM 10 O3' A A 324 65.022 -25.505 108.271 1.00 41.25 O
ATOM 11 C2' A A 324 64.558 -25.428 110.629 1.00 41.86 C
ATOM 12 O2' A A 324 63.212 -25.311 110.220 1.00 41.54 O
ATOM 13 C1' A A 324 64.635 -26.510 111.678 1.00 42.29 C
ATOM 14 N9 A A 324 65.669 -26.249 112.674 1.00 42.72 N
ATOM 15 C8 A A 324 66.817 -26.966 112.848 1.00 43.02 C
ATOM 16 N7 A A 324 67.502 -26.522 113.858 1.00 43.40 N
ATOM 17 C5 A A 324 66.746 -25.477 114.357 1.00 43.33 C
ATOM 18 C6 A A 324 66.947 -24.628 115.417 1.00 43.63 C
ATOM 19 N6 A A 324 68.048 -24.765 116.136 1.00 44.05 N
ATOM 20 N1 A A 324 66.041 -23.669 115.682 1.00 43.49 N
ATOM 21 C2 A A 324 64.967 -23.599 114.914 1.00 43.08 C
ATOM 22 N3 A A 324 64.638 -24.363 113.873 1.00 42.77 N
ATOM 23 C4 A A 324 65.597 -25.290 113.649 1.00 42.92 C
ATOM 24 P U A 325 66.086 -24.726 107.391 1.00 52.40 P
ATOM 25 OP1 U A 325 65.623 -24.807 106.002 1.00 51.96 O
ATOM 26 OP2 U A 325 67.394 -25.268 107.725 1.00 52.74 O
ATOM 27 O5' U A 325 65.945 -23.244 107.929 1.00 52.40 O
TER
ATOM 1 O3' A B 23 59.811 -18.362 108.682 1.00 46.03 O
ATOM 2 P C B 24 58.830 -19.588 109.008 1.00 42.11 P
ATOM 3 OP1 C B 24 58.609 -20.277 107.716 1.00 41.76 O
ATOM 4 OP2 C B 24 57.652 -19.041 109.757 1.00 42.16 O
ATOM 5 O5' C B 24 59.694 -20.513 109.969 1.00 42.54 O
ATOM 6 C5' C B 24 60.637 -21.420 109.437 1.00 42.56 C
ATOM 7 C4' C B 24 61.375 -22.137 110.521 1.00 43.01 C
ATOM 8 O4' C B 24 61.992 -21.169 111.409 1.00 43.29 O
ATOM 9 C3' C B 24 60.529 -22.993 111.427 1.00 43.25 C
ATOM 10 O3' C B 24 60.294 -24.268 110.888 1.00 43.17 O
ATOM 11 C2' C B 24 61.329 -23.039 112.707 1.00 43.74 C
ATOM 12 O2' C B 24 62.326 -24.039 112.602 1.00 43.92 O
ATOM 13 C1' C B 24 62.010 -21.661 112.727 1.00 43.72 C
ATOM 14 N1 C B 24 61.308 -20.688 113.598 1.00 43.84 N
ATOM 15 C2 C B 24 61.553 -20.677 114.966 1.00 44.31 C
ATOM 16 O2 C B 24 62.346 -21.489 115.435 1.00 44.62 O
ATOM 17 N3 C B 24 60.931 -19.789 115.764 1.00 44.43 N
ATOM 18 C4 C B 24 60.073 -18.941 115.228 1.00 44.11 C
ATOM 19 N4 C B 24 59.493 -18.079 116.059 1.00 44.26 N
ATOM 20 C5 C B 24 59.805 -18.911 113.843 1.00 43.63 C
ATOM 21 C6 C B 24 60.439 -19.783 113.077 1.00 43.51 C
ATOM 22 P C B 25 58.810 -24.899 110.959 1.00 37.49 P
ATOM 23 OP1 C B 25 58.853 -26.212 110.253 1.00 37.41 O
ATOM 24 OP2 C B 25 57.878 -23.855 110.477 1.00 37.15 O
ATOM 25 O5' C B 25 58.605 -25.118 112.516 1.00 37.95 O
TER
Atoms:
OP1: (68.698,-29.123,107.808)
OP2: (69.705,-28.789,110.100)
C3': (65.377,-26.025,109.522)
C1': (64.635,-26.510,111.678)
C5': (66.073,-28.434,109.070)
O4': (64.936,-27.715,111.036)
C8: (66.817,-26.966,112.848)
O2': (63.212,-25.311,110.220)
C6: (66.947,-24.628,115.417)
C5: (66.746,-25.477,114.357)
C4: (65.597,-25.290,113.649)
P: (68.559,-29.145,109.288)
C4': (65.054,-27.496,109.633)
C2': (64.558,-25.428,110.629)
C2: (64.967,-23.599,114.914)
N1: (66.041,-23.669,115.682)
N3: (64.638,-24.363,113.873)
N6: (68.048,-24.765,116.136)
N7: (67.502,-26.522,113.858)
N9: (65.669,-26.249,112.674)
O5': (67.313,-28.277,109.719)
O3': (65.022,-25.505,108.271)
OP2: (69.705,-28.789,110.100)
C3': (65.377,-26.025,109.522)
C1': (64.635,-26.510,111.678)
C5': (66.073,-28.434,109.070)
O4': (64.936,-27.715,111.036)
C8: (66.817,-26.966,112.848)
O2': (63.212,-25.311,110.220)
C6: (66.947,-24.628,115.417)
C5: (66.746,-25.477,114.357)
C4: (65.597,-25.290,113.649)
P: (68.559,-29.145,109.288)
C4': (65.054,-27.496,109.633)
C2': (64.558,-25.428,110.629)
C2: (64.967,-23.599,114.914)
N1: (66.041,-23.669,115.682)
N3: (64.638,-24.363,113.873)
N6: (68.048,-24.765,116.136)
N7: (67.502,-26.522,113.858)
N9: (65.669,-26.249,112.674)
O5': (67.313,-28.277,109.719)
O3': (65.022,-25.505,108.271)
C2: (61.553,-20.677,114.966)
OP1: (58.609,-20.277,107.716)
OP2: (57.652,-19.041,109.757)
C4: (60.073,-18.941,115.228)
O5': (59.694,-20.513,109.969)
C3': (60.529,-22.993,111.427)
C1': (62.010,-21.661,112.727)
O4': (61.992,-21.169,111.409)
C5': (60.637,-21.420,109.437)
P: (58.830,-19.588,109.008)
O2: (62.346,-21.489,115.435)
C4': (61.375,-22.137,110.521)
C2': (61.329,-23.039,112.707)
O2': (62.326,-24.039,112.602)
N1: (61.308,-20.688,113.598)
N3: (60.931,-19.789,115.764)
N4: (59.493,-18.079,116.059)
C6: (60.439,-19.783,113.077)
C5: (59.805,-18.911,113.843)
O3': (60.294,-24.268,110.888)
OP1: (58.609,-20.277,107.716)
OP2: (57.652,-19.041,109.757)
C4: (60.073,-18.941,115.228)
O5': (59.694,-20.513,109.969)
C3': (60.529,-22.993,111.427)
C1': (62.010,-21.661,112.727)
O4': (61.992,-21.169,111.409)
C5': (60.637,-21.420,109.437)
P: (58.830,-19.588,109.008)
O2: (62.346,-21.489,115.435)
C4': (61.375,-22.137,110.521)
C2': (61.329,-23.039,112.707)
O2': (62.326,-24.039,112.602)
N1: (61.308,-20.688,113.598)
N3: (60.931,-19.789,115.764)
N4: (59.493,-18.079,116.059)
C6: (60.439,-19.783,113.077)
C5: (59.805,-18.911,113.843)
O3': (60.294,-24.268,110.888)
Image (generated by PyMOL):