Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11581:11653
Extra
PDB:
ATOM 1 O3' U A1580 -8.505 35.531 163.259 1.00 80.76 O
ATOM 2 P A A1581 -6.991 35.277 162.822 1.00 78.18 P
ATOM 3 OP1 A A1581 -6.550 34.009 163.495 1.00 78.09 O
ATOM 4 OP2 A A1581 -6.244 36.521 163.097 1.00 78.63 O
ATOM 5 O5' A A1581 -7.120 35.064 161.238 1.00 77.20 O
ATOM 6 C5' A A1581 -8.037 34.117 160.697 1.00 76.73 C
ATOM 7 C4' A A1581 -8.382 34.424 159.257 1.00 76.07 C
ATOM 8 O4' A A1581 -8.979 35.725 159.157 1.00 76.54 O
ATOM 9 C3' A A1581 -7.225 34.487 158.304 1.00 75.34 C
ATOM 10 O3' A A1581 -6.838 33.220 157.872 1.00 74.63 O
ATOM 11 C2' A A1581 -7.733 35.371 157.176 1.00 75.08 C
ATOM 12 O2' A A1581 -8.466 34.598 156.256 1.00 74.45 O
ATOM 13 C1' A A1581 -8.710 36.283 157.896 1.00 75.96 C
ATOM 14 N9 A A1581 -8.235 37.659 158.107 1.00 76.46 N
ATOM 15 C8 A A1581 -7.487 38.099 159.161 1.00 77.07 C
ATOM 16 N7 A A1581 -7.316 39.395 159.183 1.00 77.51 N
ATOM 17 C5 A A1581 -8.048 39.867 158.105 1.00 77.19 C
ATOM 18 C6 A A1581 -8.294 41.172 157.602 1.00 77.42 C
ATOM 19 N6 A A1581 -7.808 42.306 158.113 1.00 78.04 N
ATOM 20 N1 A A1581 -9.074 41.271 156.507 1.00 76.99 N
ATOM 21 C2 A A1581 -9.566 40.147 155.974 1.00 76.38 C
ATOM 22 N3 A A1581 -9.416 38.879 156.364 1.00 76.12 N
ATOM 23 C4 A A1581 -8.636 38.798 157.448 1.00 76.55 C
ATOM 24 P A A1582 -5.322 32.969 157.510 1.00 74.98 P
ATOM 25 OP1 A A1582 -5.136 31.503 157.408 1.00 74.45 O
ATOM 26 OP2 A A1582 -4.518 33.732 158.497 1.00 75.65 O
ATOM 27 O5' A A1582 -5.205 33.636 156.071 1.00 74.37 O
TER
ATOM 1 O3' C B1652 -9.278 32.429 148.881 1.00 73.63 O
ATOM 2 P C B1653 -10.702 32.781 149.524 1.00 74.98 P
ATOM 3 OP1 C B1653 -11.215 31.527 150.167 1.00 75.03 O
ATOM 4 OP2 C B1653 -11.515 33.420 148.459 1.00 74.81 O
ATOM 5 O5' C B1653 -10.327 33.865 150.634 1.00 75.81 O
ATOM 6 C5' C B1653 -9.771 33.468 151.877 1.00 76.23 C
ATOM 7 C4' C B1653 -9.610 34.638 152.809 1.00 77.06 C
ATOM 8 O4' C B1653 -8.899 35.707 152.133 1.00 76.91 O
ATOM 9 C3' C B1653 -10.896 35.287 153.305 1.00 77.78 C
ATOM 10 O3' C B1653 -11.459 34.603 154.416 1.00 78.26 O
ATOM 11 C2' C B1653 -10.448 36.701 153.643 1.00 78.33 C
ATOM 12 O2' C B1653 -9.840 36.741 154.924 1.00 78.92 O
ATOM 13 C1' C B1653 -9.367 36.953 152.591 1.00 77.65 C
ATOM 14 N1 C B1653 -9.875 37.700 151.442 1.00 77.40 N
ATOM 15 C2 C B1653 -10.096 39.068 151.588 1.00 77.99 C
ATOM 16 O2 C B1653 -9.878 39.606 152.698 1.00 78.72 O
ATOM 17 N3 C B1653 -10.549 39.754 150.512 1.00 77.76 N
ATOM 18 C4 C B1653 -10.761 39.134 149.363 1.00 77.00 C
ATOM 19 N4 C B1653 -11.194 39.856 148.339 1.00 76.82 N
ATOM 20 C5 C B1653 -10.540 37.745 149.201 1.00 76.39 C
ATOM 21 C6 C B1653 -10.096 37.061 150.258 1.00 76.61 C
ATOM 22 P C B1654 -13.061 34.545 154.633 1.00 78.32 P
ATOM 23 OP1 C B1654 -13.325 33.548 155.695 1.00 78.63 O
ATOM 24 OP2 C B1654 -13.664 34.336 153.298 1.00 77.66 O
ATOM 25 O5' C B1654 -13.421 36.008 155.166 1.00 79.16 O
TER
ATOM 2 P A A1581 -6.991 35.277 162.822 1.00 78.18 P
ATOM 3 OP1 A A1581 -6.550 34.009 163.495 1.00 78.09 O
ATOM 4 OP2 A A1581 -6.244 36.521 163.097 1.00 78.63 O
ATOM 5 O5' A A1581 -7.120 35.064 161.238 1.00 77.20 O
ATOM 6 C5' A A1581 -8.037 34.117 160.697 1.00 76.73 C
ATOM 7 C4' A A1581 -8.382 34.424 159.257 1.00 76.07 C
ATOM 8 O4' A A1581 -8.979 35.725 159.157 1.00 76.54 O
ATOM 9 C3' A A1581 -7.225 34.487 158.304 1.00 75.34 C
ATOM 10 O3' A A1581 -6.838 33.220 157.872 1.00 74.63 O
ATOM 11 C2' A A1581 -7.733 35.371 157.176 1.00 75.08 C
ATOM 12 O2' A A1581 -8.466 34.598 156.256 1.00 74.45 O
ATOM 13 C1' A A1581 -8.710 36.283 157.896 1.00 75.96 C
ATOM 14 N9 A A1581 -8.235 37.659 158.107 1.00 76.46 N
ATOM 15 C8 A A1581 -7.487 38.099 159.161 1.00 77.07 C
ATOM 16 N7 A A1581 -7.316 39.395 159.183 1.00 77.51 N
ATOM 17 C5 A A1581 -8.048 39.867 158.105 1.00 77.19 C
ATOM 18 C6 A A1581 -8.294 41.172 157.602 1.00 77.42 C
ATOM 19 N6 A A1581 -7.808 42.306 158.113 1.00 78.04 N
ATOM 20 N1 A A1581 -9.074 41.271 156.507 1.00 76.99 N
ATOM 21 C2 A A1581 -9.566 40.147 155.974 1.00 76.38 C
ATOM 22 N3 A A1581 -9.416 38.879 156.364 1.00 76.12 N
ATOM 23 C4 A A1581 -8.636 38.798 157.448 1.00 76.55 C
ATOM 24 P A A1582 -5.322 32.969 157.510 1.00 74.98 P
ATOM 25 OP1 A A1582 -5.136 31.503 157.408 1.00 74.45 O
ATOM 26 OP2 A A1582 -4.518 33.732 158.497 1.00 75.65 O
ATOM 27 O5' A A1582 -5.205 33.636 156.071 1.00 74.37 O
TER
ATOM 1 O3' C B1652 -9.278 32.429 148.881 1.00 73.63 O
ATOM 2 P C B1653 -10.702 32.781 149.524 1.00 74.98 P
ATOM 3 OP1 C B1653 -11.215 31.527 150.167 1.00 75.03 O
ATOM 4 OP2 C B1653 -11.515 33.420 148.459 1.00 74.81 O
ATOM 5 O5' C B1653 -10.327 33.865 150.634 1.00 75.81 O
ATOM 6 C5' C B1653 -9.771 33.468 151.877 1.00 76.23 C
ATOM 7 C4' C B1653 -9.610 34.638 152.809 1.00 77.06 C
ATOM 8 O4' C B1653 -8.899 35.707 152.133 1.00 76.91 O
ATOM 9 C3' C B1653 -10.896 35.287 153.305 1.00 77.78 C
ATOM 10 O3' C B1653 -11.459 34.603 154.416 1.00 78.26 O
ATOM 11 C2' C B1653 -10.448 36.701 153.643 1.00 78.33 C
ATOM 12 O2' C B1653 -9.840 36.741 154.924 1.00 78.92 O
ATOM 13 C1' C B1653 -9.367 36.953 152.591 1.00 77.65 C
ATOM 14 N1 C B1653 -9.875 37.700 151.442 1.00 77.40 N
ATOM 15 C2 C B1653 -10.096 39.068 151.588 1.00 77.99 C
ATOM 16 O2 C B1653 -9.878 39.606 152.698 1.00 78.72 O
ATOM 17 N3 C B1653 -10.549 39.754 150.512 1.00 77.76 N
ATOM 18 C4 C B1653 -10.761 39.134 149.363 1.00 77.00 C
ATOM 19 N4 C B1653 -11.194 39.856 148.339 1.00 76.82 N
ATOM 20 C5 C B1653 -10.540 37.745 149.201 1.00 76.39 C
ATOM 21 C6 C B1653 -10.096 37.061 150.258 1.00 76.61 C
ATOM 22 P C B1654 -13.061 34.545 154.633 1.00 78.32 P
ATOM 23 OP1 C B1654 -13.325 33.548 155.695 1.00 78.63 O
ATOM 24 OP2 C B1654 -13.664 34.336 153.298 1.00 77.66 O
ATOM 25 O5' C B1654 -13.421 36.008 155.166 1.00 79.16 O
TER
Atoms:
OP1: (-6.550,34.009,163.495)
OP2: (-6.244,36.521,163.097)
C3': (-7.225,34.487,158.304)
C1': (-8.710,36.283,157.896)
C5': (-8.037,34.117,160.697)
O4': (-8.979,35.725,159.157)
C8: (-7.487,38.099,159.161)
O2': (-8.466,34.598,156.256)
C6: (-8.294,41.172,157.602)
C5: (-8.048,39.867,158.105)
C4: (-8.636,38.798,157.448)
P: (-6.991,35.277,162.822)
C4': (-8.382,34.424,159.257)
C2': (-7.733,35.371,157.176)
C2: (-9.566,40.147,155.974)
N1: (-9.074,41.271,156.507)
N3: (-9.416,38.879,156.364)
N6: (-7.808,42.306,158.113)
N7: (-7.316,39.395,159.183)
N9: (-8.235,37.659,158.107)
O5': (-7.120,35.064,161.238)
O3': (-6.838,33.220,157.872)
OP2: (-6.244,36.521,163.097)
C3': (-7.225,34.487,158.304)
C1': (-8.710,36.283,157.896)
C5': (-8.037,34.117,160.697)
O4': (-8.979,35.725,159.157)
C8: (-7.487,38.099,159.161)
O2': (-8.466,34.598,156.256)
C6: (-8.294,41.172,157.602)
C5: (-8.048,39.867,158.105)
C4: (-8.636,38.798,157.448)
P: (-6.991,35.277,162.822)
C4': (-8.382,34.424,159.257)
C2': (-7.733,35.371,157.176)
C2: (-9.566,40.147,155.974)
N1: (-9.074,41.271,156.507)
N3: (-9.416,38.879,156.364)
N6: (-7.808,42.306,158.113)
N7: (-7.316,39.395,159.183)
N9: (-8.235,37.659,158.107)
O5': (-7.120,35.064,161.238)
O3': (-6.838,33.220,157.872)
C2: (-10.096,39.068,151.588)
OP1: (-11.215,31.527,150.167)
OP2: (-11.515,33.420,148.459)
C4: (-10.761,39.134,149.363)
O5': (-10.327,33.865,150.634)
C3': (-10.896,35.287,153.305)
C1': (-9.367,36.953,152.591)
O4': (-8.899,35.707,152.133)
C5': (-9.771,33.468,151.877)
P: (-10.702,32.781,149.524)
O2: (-9.878,39.606,152.698)
C4': (-9.610,34.638,152.809)
C2': (-10.448,36.701,153.643)
O2': (-9.840,36.741,154.924)
N1: (-9.875,37.700,151.442)
N3: (-10.549,39.754,150.512)
N4: (-11.194,39.856,148.339)
C6: (-10.096,37.061,150.258)
C5: (-10.540,37.745,149.201)
O3': (-11.459,34.603,154.416)
OP1: (-11.215,31.527,150.167)
OP2: (-11.515,33.420,148.459)
C4: (-10.761,39.134,149.363)
O5': (-10.327,33.865,150.634)
C3': (-10.896,35.287,153.305)
C1': (-9.367,36.953,152.591)
O4': (-8.899,35.707,152.133)
C5': (-9.771,33.468,151.877)
P: (-10.702,32.781,149.524)
O2: (-9.878,39.606,152.698)
C4': (-9.610,34.638,152.809)
C2': (-10.448,36.701,153.643)
O2': (-9.840,36.741,154.924)
N1: (-9.875,37.700,151.442)
N3: (-10.549,39.754,150.512)
N4: (-11.194,39.856,148.339)
C6: (-10.096,37.061,150.258)
C5: (-10.540,37.745,149.201)
O3': (-11.459,34.603,154.416)
Image (generated by PyMOL):