Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQK:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.390 98.196 122.069 1.00 67.18 O
ATOM 2 P C A 559 -4.693 97.288 123.364 1.00 69.09 P
ATOM 3 OP1 C A 559 -4.057 97.956 124.529 1.00 68.49 O
ATOM 4 OP2 C A 559 -4.364 95.869 123.053 1.00 66.84 O
ATOM 5 O5' C A 559 -6.269 97.394 123.540 1.00 69.96 O
ATOM 6 C5' C A 559 -6.915 98.669 123.679 1.00 70.09 C
ATOM 7 C4' C A 559 -8.401 98.509 123.485 1.00 71.67 C
ATOM 8 O4' C A 559 -8.665 98.083 122.122 1.00 70.36 O
ATOM 9 C3' C A 559 -9.040 97.425 124.336 1.00 73.16 C
ATOM 10 O3' C A 559 -9.318 97.885 125.656 1.00 76.19 O
ATOM 11 C2' C A 559 -10.293 97.091 123.541 1.00 72.08 C
ATOM 12 O2' C A 559 -11.309 98.056 123.726 1.00 73.68 O
ATOM 13 C1' C A 559 -9.768 97.191 122.106 1.00 69.77 C
ATOM 14 N1 C A 559 -9.328 95.901 121.533 1.00 67.18 N
ATOM 15 C2 C A 559 -10.283 95.071 120.921 1.00 66.57 C
ATOM 16 O2 C A 559 -11.471 95.438 120.890 1.00 66.99 O
ATOM 17 N3 C A 559 -9.886 93.889 120.381 1.00 64.71 N
ATOM 18 C4 C A 559 -8.603 93.523 120.445 1.00 63.36 C
ATOM 19 N4 C A 559 -8.254 92.348 119.901 1.00 59.56 N
ATOM 20 C5 C A 559 -7.616 94.344 121.067 1.00 64.53 C
ATOM 21 C6 C A 559 -8.017 95.513 121.590 1.00 65.56 C
ATOM 22 P G A 560 -9.161 96.876 126.899 1.00 78.51 P
ATOM 23 OP1 G A 560 -9.590 97.625 128.105 1.00 77.68 O
ATOM 24 OP2 G A 560 -7.804 96.269 126.859 1.00 78.42 O
ATOM 25 O5' G A 560 -10.230 95.733 126.590 1.00 78.24 O
TER
ATOM 1 O3' C B 573 -10.493 83.117 116.522 1.00 64.58 O
ATOM 2 P C B 574 -10.418 83.886 115.113 1.00 65.99 P
ATOM 3 OP1 C B 574 -11.325 83.195 114.159 1.00 65.86 O
ATOM 4 OP2 C B 574 -8.981 84.046 114.766 1.00 67.68 O
ATOM 5 O5' C B 574 -11.015 85.328 115.438 1.00 63.37 O
ATOM 6 C5' C B 574 -12.373 85.483 115.865 1.00 62.20 C
ATOM 7 C4' C B 574 -12.594 86.872 116.411 1.00 62.52 C
ATOM 8 O4' C B 574 -11.751 87.082 117.573 1.00 63.24 O
ATOM 9 C3' C B 574 -12.231 88.014 115.481 1.00 63.60 C
ATOM 10 O3' C B 574 -13.289 88.258 114.560 1.00 65.33 O
ATOM 11 C2' C B 574 -12.016 89.168 116.456 1.00 63.86 C
ATOM 12 O2' C B 574 -13.218 89.764 116.894 1.00 64.23 O
ATOM 13 C1' C B 574 -11.361 88.448 117.639 1.00 63.49 C
ATOM 14 N1 C B 574 -9.885 88.523 117.637 1.00 63.29 N
ATOM 15 C2 C B 574 -9.253 89.636 118.234 1.00 64.07 C
ATOM 16 O2 C B 574 -9.949 90.530 118.753 1.00 63.65 O
ATOM 17 N3 C B 574 -7.902 89.708 118.222 1.00 63.85 N
ATOM 18 C4 C B 574 -7.184 88.738 117.646 1.00 63.55 C
ATOM 19 N4 C B 574 -5.854 88.860 117.646 1.00 63.49 N
ATOM 20 C5 C B 574 -7.797 87.602 117.041 1.00 63.20 C
ATOM 21 C6 C B 574 -9.134 87.534 117.061 1.00 62.86 C
ATOM 22 P A B 575 -12.963 88.835 113.095 1.00 66.22 P
ATOM 23 OP1 A B 575 -12.451 90.222 113.256 1.00 66.43 O
ATOM 24 OP2 A B 575 -14.152 88.585 112.240 1.00 67.01 O
ATOM 25 O5' A B 575 -11.797 87.900 112.547 1.00 65.20 O
TER
ATOM 2 P C A 559 -4.693 97.288 123.364 1.00 69.09 P
ATOM 3 OP1 C A 559 -4.057 97.956 124.529 1.00 68.49 O
ATOM 4 OP2 C A 559 -4.364 95.869 123.053 1.00 66.84 O
ATOM 5 O5' C A 559 -6.269 97.394 123.540 1.00 69.96 O
ATOM 6 C5' C A 559 -6.915 98.669 123.679 1.00 70.09 C
ATOM 7 C4' C A 559 -8.401 98.509 123.485 1.00 71.67 C
ATOM 8 O4' C A 559 -8.665 98.083 122.122 1.00 70.36 O
ATOM 9 C3' C A 559 -9.040 97.425 124.336 1.00 73.16 C
ATOM 10 O3' C A 559 -9.318 97.885 125.656 1.00 76.19 O
ATOM 11 C2' C A 559 -10.293 97.091 123.541 1.00 72.08 C
ATOM 12 O2' C A 559 -11.309 98.056 123.726 1.00 73.68 O
ATOM 13 C1' C A 559 -9.768 97.191 122.106 1.00 69.77 C
ATOM 14 N1 C A 559 -9.328 95.901 121.533 1.00 67.18 N
ATOM 15 C2 C A 559 -10.283 95.071 120.921 1.00 66.57 C
ATOM 16 O2 C A 559 -11.471 95.438 120.890 1.00 66.99 O
ATOM 17 N3 C A 559 -9.886 93.889 120.381 1.00 64.71 N
ATOM 18 C4 C A 559 -8.603 93.523 120.445 1.00 63.36 C
ATOM 19 N4 C A 559 -8.254 92.348 119.901 1.00 59.56 N
ATOM 20 C5 C A 559 -7.616 94.344 121.067 1.00 64.53 C
ATOM 21 C6 C A 559 -8.017 95.513 121.590 1.00 65.56 C
ATOM 22 P G A 560 -9.161 96.876 126.899 1.00 78.51 P
ATOM 23 OP1 G A 560 -9.590 97.625 128.105 1.00 77.68 O
ATOM 24 OP2 G A 560 -7.804 96.269 126.859 1.00 78.42 O
ATOM 25 O5' G A 560 -10.230 95.733 126.590 1.00 78.24 O
TER
ATOM 1 O3' C B 573 -10.493 83.117 116.522 1.00 64.58 O
ATOM 2 P C B 574 -10.418 83.886 115.113 1.00 65.99 P
ATOM 3 OP1 C B 574 -11.325 83.195 114.159 1.00 65.86 O
ATOM 4 OP2 C B 574 -8.981 84.046 114.766 1.00 67.68 O
ATOM 5 O5' C B 574 -11.015 85.328 115.438 1.00 63.37 O
ATOM 6 C5' C B 574 -12.373 85.483 115.865 1.00 62.20 C
ATOM 7 C4' C B 574 -12.594 86.872 116.411 1.00 62.52 C
ATOM 8 O4' C B 574 -11.751 87.082 117.573 1.00 63.24 O
ATOM 9 C3' C B 574 -12.231 88.014 115.481 1.00 63.60 C
ATOM 10 O3' C B 574 -13.289 88.258 114.560 1.00 65.33 O
ATOM 11 C2' C B 574 -12.016 89.168 116.456 1.00 63.86 C
ATOM 12 O2' C B 574 -13.218 89.764 116.894 1.00 64.23 O
ATOM 13 C1' C B 574 -11.361 88.448 117.639 1.00 63.49 C
ATOM 14 N1 C B 574 -9.885 88.523 117.637 1.00 63.29 N
ATOM 15 C2 C B 574 -9.253 89.636 118.234 1.00 64.07 C
ATOM 16 O2 C B 574 -9.949 90.530 118.753 1.00 63.65 O
ATOM 17 N3 C B 574 -7.902 89.708 118.222 1.00 63.85 N
ATOM 18 C4 C B 574 -7.184 88.738 117.646 1.00 63.55 C
ATOM 19 N4 C B 574 -5.854 88.860 117.646 1.00 63.49 N
ATOM 20 C5 C B 574 -7.797 87.602 117.041 1.00 63.20 C
ATOM 21 C6 C B 574 -9.134 87.534 117.061 1.00 62.86 C
ATOM 22 P A B 575 -12.963 88.835 113.095 1.00 66.22 P
ATOM 23 OP1 A B 575 -12.451 90.222 113.256 1.00 66.43 O
ATOM 24 OP2 A B 575 -14.152 88.585 112.240 1.00 67.01 O
ATOM 25 O5' A B 575 -11.797 87.900 112.547 1.00 65.20 O
TER
Atoms:
C2: (-10.283,95.071,120.921)
OP1: (-4.057,97.956,124.529)
OP2: (-4.364,95.869,123.053)
C4: (-8.603,93.523,120.445)
O5': (-6.269,97.394,123.540)
C3': (-9.040,97.425,124.336)
C1': (-9.768,97.191,122.106)
O4': (-8.665,98.083,122.122)
C5': (-6.915,98.669,123.679)
P: (-4.693,97.288,123.364)
O2: (-11.471,95.438,120.890)
C4': (-8.401,98.509,123.485)
C2': (-10.293,97.091,123.541)
O2': (-11.309,98.056,123.726)
N1: (-9.328,95.901,121.533)
N3: (-9.886,93.889,120.381)
N4: (-8.254,92.348,119.901)
C6: (-8.017,95.513,121.590)
C5: (-7.616,94.344,121.067)
O3': (-9.318,97.885,125.656)
OP1: (-4.057,97.956,124.529)
OP2: (-4.364,95.869,123.053)
C4: (-8.603,93.523,120.445)
O5': (-6.269,97.394,123.540)
C3': (-9.040,97.425,124.336)
C1': (-9.768,97.191,122.106)
O4': (-8.665,98.083,122.122)
C5': (-6.915,98.669,123.679)
P: (-4.693,97.288,123.364)
O2: (-11.471,95.438,120.890)
C4': (-8.401,98.509,123.485)
C2': (-10.293,97.091,123.541)
O2': (-11.309,98.056,123.726)
N1: (-9.328,95.901,121.533)
N3: (-9.886,93.889,120.381)
N4: (-8.254,92.348,119.901)
C6: (-8.017,95.513,121.590)
C5: (-7.616,94.344,121.067)
O3': (-9.318,97.885,125.656)
C2: (-9.253,89.636,118.234)
OP1: (-11.325,83.195,114.159)
OP2: (-8.981,84.046,114.766)
C4: (-7.184,88.738,117.646)
O5': (-11.015,85.328,115.438)
C3': (-12.231,88.014,115.481)
C1': (-11.361,88.448,117.639)
O4': (-11.751,87.082,117.573)
C5': (-12.373,85.483,115.865)
P: (-10.418,83.886,115.113)
O2: (-9.949,90.530,118.753)
C4': (-12.594,86.872,116.411)
C2': (-12.016,89.168,116.456)
O2': (-13.218,89.764,116.894)
N1: (-9.885,88.523,117.637)
N3: (-7.902,89.708,118.222)
N4: (-5.854,88.860,117.646)
C6: (-9.134,87.534,117.061)
C5: (-7.797,87.602,117.041)
O3': (-13.289,88.258,114.560)
OP1: (-11.325,83.195,114.159)
OP2: (-8.981,84.046,114.766)
C4: (-7.184,88.738,117.646)
O5': (-11.015,85.328,115.438)
C3': (-12.231,88.014,115.481)
C1': (-11.361,88.448,117.639)
O4': (-11.751,87.082,117.573)
C5': (-12.373,85.483,115.865)
P: (-10.418,83.886,115.113)
O2: (-9.949,90.530,118.753)
C4': (-12.594,86.872,116.411)
C2': (-12.016,89.168,116.456)
O2': (-13.218,89.764,116.894)
N1: (-9.885,88.523,117.637)
N3: (-7.902,89.708,118.222)
N4: (-5.854,88.860,117.646)
C6: (-9.134,87.534,117.061)
C5: (-7.797,87.602,117.041)
O3': (-13.289,88.258,114.560)
Image (generated by PyMOL):