Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12588:12589
Extra
PDB:
ATOM 1 O3' U A2587 13.282 -1.418 13.811 1.00 49.03 O
ATOM 2 P C A2588 11.967 -1.084 12.995 1.00 50.42 P
ATOM 3 OP1 C A2588 12.387 -0.682 11.639 1.00 50.85 O
ATOM 4 OP2 C A2588 11.222 -0.137 13.812 1.00 50.32 O
ATOM 5 O5' C A2588 11.189 -2.485 12.947 1.00 50.53 O
ATOM 6 C5' C A2588 11.826 -3.668 12.514 1.00 50.54 C
ATOM 7 C4' C A2588 10.950 -4.887 12.696 1.00 50.61 C
ATOM 8 O4' C A2588 10.932 -5.317 14.078 1.00 50.12 O
ATOM 9 C3' C A2588 9.480 -4.749 12.348 1.00 51.01 C
ATOM 10 O3' C A2588 9.255 -4.801 10.948 1.00 51.56 O
ATOM 11 C2' C A2588 8.868 -5.948 13.073 1.00 50.85 C
ATOM 12 O2' C A2588 9.072 -7.128 12.303 1.00 51.08 O
ATOM 13 C1' C A2588 9.732 -6.058 14.319 1.00 50.25 C
ATOM 14 N1 C A2588 9.047 -5.570 15.560 1.00 49.96 N
ATOM 15 C2 C A2588 9.342 -4.288 16.044 1.00 49.76 C
ATOM 16 O2 C A2588 10.106 -3.613 15.370 1.00 49.86 O
ATOM 17 N3 C A2588 8.828 -3.711 17.157 1.00 49.51 N
ATOM 18 C4 C A2588 8.038 -4.414 17.879 1.00 49.40 C
ATOM 19 N4 C A2588 7.606 -3.739 18.952 1.00 49.16 N
ATOM 20 C5 C A2588 7.709 -5.769 17.440 1.00 49.59 C
ATOM 21 C6 C A2588 8.207 -6.335 16.306 1.00 49.86 C
ATOM 22 P A A2589 8.321 -3.718 10.210 1.00 57.27 P
ATOM 23 OP1 A A2589 8.532 -3.892 8.751 1.00 57.78 O
ATOM 24 OP2 A A2589 8.594 -2.399 10.815 1.00 57.03 O
ATOM 25 O5' A A2589 6.872 -4.185 10.602 1.00 57.41 O
TER
ATOM 1 O3' C B2588 9.255 -4.801 10.948 1.00 51.56 O
ATOM 2 P A B2589 8.321 -3.718 10.210 1.00 57.27 P
ATOM 3 OP1 A B2589 8.532 -3.892 8.751 1.00 57.78 O
ATOM 4 OP2 A B2589 8.594 -2.399 10.815 1.00 57.03 O
ATOM 5 O5' A B2589 6.872 -4.185 10.602 1.00 57.41 O
ATOM 6 C5' A B2589 6.551 -5.557 10.648 1.00 57.43 C
ATOM 7 C4' A B2589 5.332 -5.778 11.480 1.00 57.38 C
ATOM 8 O4' A B2589 5.624 -5.401 12.845 1.00 56.82 O
ATOM 9 C3' A B2589 4.120 -4.962 11.059 1.00 57.80 C
ATOM 10 O3' A B2589 2.960 -5.728 11.272 1.00 57.97 O
ATOM 11 C2' A B2589 4.117 -3.800 12.027 1.00 57.47 C
ATOM 12 O2' A B2589 2.841 -3.253 12.272 1.00 57.68 O
ATOM 13 C1' A B2589 4.708 -4.424 13.285 1.00 56.88 C
ATOM 14 N9 A B2589 5.411 -3.437 14.106 1.00 56.46 N
ATOM 15 C8 A B2589 6.350 -2.566 13.621 1.00 56.47 C
ATOM 16 N7 A B2589 6.754 -1.697 14.516 1.00 56.10 N
ATOM 17 C5 A B2589 6.009 -1.996 15.640 1.00 55.86 C
ATOM 18 C6 A B2589 5.971 -1.415 16.897 1.00 55.47 C
ATOM 19 N6 A B2589 6.752 -0.402 17.231 1.00 55.24 N
ATOM 20 N1 A B2589 5.134 -1.904 17.813 1.00 55.32 N
ATOM 21 C2 A B2589 4.393 -2.944 17.440 1.00 55.56 C
ATOM 22 N3 A B2589 4.343 -3.588 16.294 1.00 55.93 N
ATOM 23 C4 A B2589 5.175 -3.053 15.408 1.00 56.07 C
ATOM 24 P A B2590 1.966 -6.050 10.054 1.00 58.65 P
ATOM 25 OP1 A B2590 2.594 -7.177 9.276 1.00 58.80 O
ATOM 26 OP2 A B2590 1.678 -4.754 9.344 1.00 59.01 O
ATOM 27 O5' A B2590 0.652 -6.535 10.835 1.00 58.65 O
TER
ATOM 2 P C A2588 11.967 -1.084 12.995 1.00 50.42 P
ATOM 3 OP1 C A2588 12.387 -0.682 11.639 1.00 50.85 O
ATOM 4 OP2 C A2588 11.222 -0.137 13.812 1.00 50.32 O
ATOM 5 O5' C A2588 11.189 -2.485 12.947 1.00 50.53 O
ATOM 6 C5' C A2588 11.826 -3.668 12.514 1.00 50.54 C
ATOM 7 C4' C A2588 10.950 -4.887 12.696 1.00 50.61 C
ATOM 8 O4' C A2588 10.932 -5.317 14.078 1.00 50.12 O
ATOM 9 C3' C A2588 9.480 -4.749 12.348 1.00 51.01 C
ATOM 10 O3' C A2588 9.255 -4.801 10.948 1.00 51.56 O
ATOM 11 C2' C A2588 8.868 -5.948 13.073 1.00 50.85 C
ATOM 12 O2' C A2588 9.072 -7.128 12.303 1.00 51.08 O
ATOM 13 C1' C A2588 9.732 -6.058 14.319 1.00 50.25 C
ATOM 14 N1 C A2588 9.047 -5.570 15.560 1.00 49.96 N
ATOM 15 C2 C A2588 9.342 -4.288 16.044 1.00 49.76 C
ATOM 16 O2 C A2588 10.106 -3.613 15.370 1.00 49.86 O
ATOM 17 N3 C A2588 8.828 -3.711 17.157 1.00 49.51 N
ATOM 18 C4 C A2588 8.038 -4.414 17.879 1.00 49.40 C
ATOM 19 N4 C A2588 7.606 -3.739 18.952 1.00 49.16 N
ATOM 20 C5 C A2588 7.709 -5.769 17.440 1.00 49.59 C
ATOM 21 C6 C A2588 8.207 -6.335 16.306 1.00 49.86 C
ATOM 22 P A A2589 8.321 -3.718 10.210 1.00 57.27 P
ATOM 23 OP1 A A2589 8.532 -3.892 8.751 1.00 57.78 O
ATOM 24 OP2 A A2589 8.594 -2.399 10.815 1.00 57.03 O
ATOM 25 O5' A A2589 6.872 -4.185 10.602 1.00 57.41 O
TER
ATOM 1 O3' C B2588 9.255 -4.801 10.948 1.00 51.56 O
ATOM 2 P A B2589 8.321 -3.718 10.210 1.00 57.27 P
ATOM 3 OP1 A B2589 8.532 -3.892 8.751 1.00 57.78 O
ATOM 4 OP2 A B2589 8.594 -2.399 10.815 1.00 57.03 O
ATOM 5 O5' A B2589 6.872 -4.185 10.602 1.00 57.41 O
ATOM 6 C5' A B2589 6.551 -5.557 10.648 1.00 57.43 C
ATOM 7 C4' A B2589 5.332 -5.778 11.480 1.00 57.38 C
ATOM 8 O4' A B2589 5.624 -5.401 12.845 1.00 56.82 O
ATOM 9 C3' A B2589 4.120 -4.962 11.059 1.00 57.80 C
ATOM 10 O3' A B2589 2.960 -5.728 11.272 1.00 57.97 O
ATOM 11 C2' A B2589 4.117 -3.800 12.027 1.00 57.47 C
ATOM 12 O2' A B2589 2.841 -3.253 12.272 1.00 57.68 O
ATOM 13 C1' A B2589 4.708 -4.424 13.285 1.00 56.88 C
ATOM 14 N9 A B2589 5.411 -3.437 14.106 1.00 56.46 N
ATOM 15 C8 A B2589 6.350 -2.566 13.621 1.00 56.47 C
ATOM 16 N7 A B2589 6.754 -1.697 14.516 1.00 56.10 N
ATOM 17 C5 A B2589 6.009 -1.996 15.640 1.00 55.86 C
ATOM 18 C6 A B2589 5.971 -1.415 16.897 1.00 55.47 C
ATOM 19 N6 A B2589 6.752 -0.402 17.231 1.00 55.24 N
ATOM 20 N1 A B2589 5.134 -1.904 17.813 1.00 55.32 N
ATOM 21 C2 A B2589 4.393 -2.944 17.440 1.00 55.56 C
ATOM 22 N3 A B2589 4.343 -3.588 16.294 1.00 55.93 N
ATOM 23 C4 A B2589 5.175 -3.053 15.408 1.00 56.07 C
ATOM 24 P A B2590 1.966 -6.050 10.054 1.00 58.65 P
ATOM 25 OP1 A B2590 2.594 -7.177 9.276 1.00 58.80 O
ATOM 26 OP2 A B2590 1.678 -4.754 9.344 1.00 59.01 O
ATOM 27 O5' A B2590 0.652 -6.535 10.835 1.00 58.65 O
TER
Atoms:
C2: (9.342,-4.288,16.044)
OP1: (12.387,-0.682,11.639)
OP2: (11.222,-0.137,13.812)
C4: (8.038,-4.414,17.879)
O5': (11.189,-2.485,12.947)
C3': (9.480,-4.749,12.348)
C1': (9.732,-6.058,14.319)
O4': (10.932,-5.317,14.078)
C5': (11.826,-3.668,12.514)
P: (11.967,-1.084,12.995)
O2: (10.106,-3.613,15.370)
C4': (10.950,-4.887,12.696)
C2': (8.868,-5.948,13.073)
O2': (9.072,-7.128,12.303)
N1: (9.047,-5.570,15.560)
N3: (8.828,-3.711,17.157)
N4: (7.606,-3.739,18.952)
C6: (8.207,-6.335,16.306)
C5: (7.709,-5.769,17.440)
O3': (9.255,-4.801,10.948)
OP1: (12.387,-0.682,11.639)
OP2: (11.222,-0.137,13.812)
C4: (8.038,-4.414,17.879)
O5': (11.189,-2.485,12.947)
C3': (9.480,-4.749,12.348)
C1': (9.732,-6.058,14.319)
O4': (10.932,-5.317,14.078)
C5': (11.826,-3.668,12.514)
P: (11.967,-1.084,12.995)
O2: (10.106,-3.613,15.370)
C4': (10.950,-4.887,12.696)
C2': (8.868,-5.948,13.073)
O2': (9.072,-7.128,12.303)
N1: (9.047,-5.570,15.560)
N3: (8.828,-3.711,17.157)
N4: (7.606,-3.739,18.952)
C6: (8.207,-6.335,16.306)
C5: (7.709,-5.769,17.440)
O3': (9.255,-4.801,10.948)
OP1: (8.532,-3.892,8.751)
OP2: (8.594,-2.399,10.815)
C3': (4.120,-4.962,11.059)
C1': (4.708,-4.424,13.285)
C5': (6.551,-5.557,10.648)
O4': (5.624,-5.401,12.845)
C8: (6.350,-2.566,13.621)
O2': (2.841,-3.253,12.272)
C6: (5.971,-1.415,16.897)
C5: (6.009,-1.996,15.640)
C4: (5.175,-3.053,15.408)
P: (8.321,-3.718,10.210)
C4': (5.332,-5.778,11.480)
C2': (4.117,-3.800,12.027)
C2: (4.393,-2.944,17.440)
N1: (5.134,-1.904,17.813)
N3: (4.343,-3.588,16.294)
N6: (6.752,-0.402,17.231)
N7: (6.754,-1.697,14.516)
N9: (5.411,-3.437,14.106)
O5': (6.872,-4.185,10.602)
O3': (2.960,-5.728,11.272)
OP2: (8.594,-2.399,10.815)
C3': (4.120,-4.962,11.059)
C1': (4.708,-4.424,13.285)
C5': (6.551,-5.557,10.648)
O4': (5.624,-5.401,12.845)
C8: (6.350,-2.566,13.621)
O2': (2.841,-3.253,12.272)
C6: (5.971,-1.415,16.897)
C5: (6.009,-1.996,15.640)
C4: (5.175,-3.053,15.408)
P: (8.321,-3.718,10.210)
C4': (5.332,-5.778,11.480)
C2': (4.117,-3.800,12.027)
C2: (4.393,-2.944,17.440)
N1: (5.134,-1.904,17.813)
N3: (4.343,-3.588,16.294)
N6: (6.752,-0.402,17.231)
N7: (6.754,-1.697,14.516)
N9: (5.411,-3.437,14.106)
O5': (6.872,-4.185,10.602)
O3': (2.960,-5.728,11.272)
Image (generated by PyMOL):