Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A33:A34
Extra
PDB:
ATOM 1 O3' A A 32 6.976 0.835 40.687 1.00117.97 O
ATOM 2 P C A 33 7.175 2.338 41.219 1.00120.97 P
ATOM 3 OP1 C A 33 7.569 2.250 42.644 1.00120.65 O
ATOM 4 OP2 C A 33 6.016 3.180 40.844 1.00121.19 O
ATOM 5 O5' C A 33 8.425 2.828 40.338 1.00122.24 O
ATOM 6 C5' C A 33 9.758 2.848 40.875 1.00123.06 C
ATOM 7 C4' C A 33 10.810 2.737 39.779 1.00123.48 C
ATOM 8 O4' C A 33 12.065 2.293 40.357 1.00123.65 O
ATOM 9 C3' C A 33 10.549 1.717 38.680 1.00123.59 C
ATOM 10 O3' C A 33 11.276 2.078 37.506 1.00124.08 O
ATOM 11 C2' C A 33 11.072 0.423 39.285 1.00123.45 C
ATOM 12 O2' C A 33 11.525 -0.487 38.306 1.00123.20 O
ATOM 13 C1' C A 33 12.257 0.906 40.125 1.00123.76 C
ATOM 14 N1 C A 33 12.484 0.248 41.471 1.00124.43 N
ATOM 15 C2 C A 33 13.784 0.257 42.022 1.00124.84 C
ATOM 16 O2 C A 33 14.724 0.781 41.419 1.00124.19 O
ATOM 17 N3 C A 33 14.004 -0.320 43.229 1.00125.97 N
ATOM 18 C4 C A 33 12.998 -0.887 43.896 1.00126.06 C
ATOM 19 N4 C A 33 13.273 -1.444 45.085 1.00126.69 N
ATOM 20 C5 C A 33 11.669 -0.905 43.367 1.00125.30 C
ATOM 21 C6 C A 33 11.455 -0.336 42.172 1.00124.63 C
ATOM 22 P G A 34 10.594 2.048 36.054 1.00123.53 P
ATOM 23 OP1 G A 34 9.618 0.934 36.016 1.00123.54 O
ATOM 24 OP2 G A 34 11.695 2.069 35.062 1.00123.38 O
ATOM 25 O5' G A 34 9.794 3.438 35.990 1.00122.66 O
TER
ATOM 1 O3' C B 33 11.276 2.078 37.506 1.00124.08 O
ATOM 2 P G B 34 10.594 2.048 36.054 1.00123.53 P
ATOM 3 OP1 G B 34 9.618 0.934 36.016 1.00123.54 O
ATOM 4 OP2 G B 34 11.695 2.069 35.062 1.00123.38 O
ATOM 5 O5' G B 34 9.794 3.438 35.990 1.00122.66 O
ATOM 6 C5' G B 34 9.182 3.861 34.758 1.00123.12 C
ATOM 7 C4' G B 34 8.235 2.810 34.181 1.00122.86 C
ATOM 8 O4' G B 34 7.252 2.466 35.187 1.00122.10 O
ATOM 9 C3' G B 34 7.419 3.217 32.953 1.00122.54 C
ATOM 10 O3' G B 34 7.132 2.052 32.159 1.00122.28 O
ATOM 11 C2' G B 34 6.184 3.886 33.568 1.00122.24 C
ATOM 12 O2' G B 34 4.997 3.816 32.792 1.00121.66 O
ATOM 13 C1' G B 34 6.029 3.117 34.884 1.00122.21 C
ATOM 14 N9 G B 34 5.655 3.980 36.002 1.00121.66 N
ATOM 15 C8 G B 34 6.472 4.657 36.880 1.00121.22 C
ATOM 16 N7 G B 34 5.817 5.348 37.769 1.00121.07 N
ATOM 17 C5 G B 34 4.488 5.113 37.456 1.00121.00 C
ATOM 18 C6 G B 34 3.311 5.591 38.066 1.00121.41 C
ATOM 19 O6 G B 34 3.224 6.345 39.043 1.00122.42 O
ATOM 20 N1 G B 34 2.160 5.113 37.431 1.00121.68 N
ATOM 21 C2 G B 34 2.153 4.271 36.337 1.00121.75 C
ATOM 22 N2 G B 34 0.958 3.900 35.852 1.00121.73 N
ATOM 23 N3 G B 34 3.256 3.818 35.759 1.00121.31 N
ATOM 24 C4 G B 34 4.373 4.278 36.371 1.00121.16 C
ATOM 25 P A B 35 7.949 1.810 30.800 1.00122.40 P
ATOM 26 OP1 A B 35 9.357 1.556 31.167 1.00122.07 O
ATOM 27 OP2 A B 35 7.655 2.945 29.893 1.00122.05 O
ATOM 28 O5' A B 35 7.269 0.481 30.193 1.00121.88 O
TER
ATOM 2 P C A 33 7.175 2.338 41.219 1.00120.97 P
ATOM 3 OP1 C A 33 7.569 2.250 42.644 1.00120.65 O
ATOM 4 OP2 C A 33 6.016 3.180 40.844 1.00121.19 O
ATOM 5 O5' C A 33 8.425 2.828 40.338 1.00122.24 O
ATOM 6 C5' C A 33 9.758 2.848 40.875 1.00123.06 C
ATOM 7 C4' C A 33 10.810 2.737 39.779 1.00123.48 C
ATOM 8 O4' C A 33 12.065 2.293 40.357 1.00123.65 O
ATOM 9 C3' C A 33 10.549 1.717 38.680 1.00123.59 C
ATOM 10 O3' C A 33 11.276 2.078 37.506 1.00124.08 O
ATOM 11 C2' C A 33 11.072 0.423 39.285 1.00123.45 C
ATOM 12 O2' C A 33 11.525 -0.487 38.306 1.00123.20 O
ATOM 13 C1' C A 33 12.257 0.906 40.125 1.00123.76 C
ATOM 14 N1 C A 33 12.484 0.248 41.471 1.00124.43 N
ATOM 15 C2 C A 33 13.784 0.257 42.022 1.00124.84 C
ATOM 16 O2 C A 33 14.724 0.781 41.419 1.00124.19 O
ATOM 17 N3 C A 33 14.004 -0.320 43.229 1.00125.97 N
ATOM 18 C4 C A 33 12.998 -0.887 43.896 1.00126.06 C
ATOM 19 N4 C A 33 13.273 -1.444 45.085 1.00126.69 N
ATOM 20 C5 C A 33 11.669 -0.905 43.367 1.00125.30 C
ATOM 21 C6 C A 33 11.455 -0.336 42.172 1.00124.63 C
ATOM 22 P G A 34 10.594 2.048 36.054 1.00123.53 P
ATOM 23 OP1 G A 34 9.618 0.934 36.016 1.00123.54 O
ATOM 24 OP2 G A 34 11.695 2.069 35.062 1.00123.38 O
ATOM 25 O5' G A 34 9.794 3.438 35.990 1.00122.66 O
TER
ATOM 1 O3' C B 33 11.276 2.078 37.506 1.00124.08 O
ATOM 2 P G B 34 10.594 2.048 36.054 1.00123.53 P
ATOM 3 OP1 G B 34 9.618 0.934 36.016 1.00123.54 O
ATOM 4 OP2 G B 34 11.695 2.069 35.062 1.00123.38 O
ATOM 5 O5' G B 34 9.794 3.438 35.990 1.00122.66 O
ATOM 6 C5' G B 34 9.182 3.861 34.758 1.00123.12 C
ATOM 7 C4' G B 34 8.235 2.810 34.181 1.00122.86 C
ATOM 8 O4' G B 34 7.252 2.466 35.187 1.00122.10 O
ATOM 9 C3' G B 34 7.419 3.217 32.953 1.00122.54 C
ATOM 10 O3' G B 34 7.132 2.052 32.159 1.00122.28 O
ATOM 11 C2' G B 34 6.184 3.886 33.568 1.00122.24 C
ATOM 12 O2' G B 34 4.997 3.816 32.792 1.00121.66 O
ATOM 13 C1' G B 34 6.029 3.117 34.884 1.00122.21 C
ATOM 14 N9 G B 34 5.655 3.980 36.002 1.00121.66 N
ATOM 15 C8 G B 34 6.472 4.657 36.880 1.00121.22 C
ATOM 16 N7 G B 34 5.817 5.348 37.769 1.00121.07 N
ATOM 17 C5 G B 34 4.488 5.113 37.456 1.00121.00 C
ATOM 18 C6 G B 34 3.311 5.591 38.066 1.00121.41 C
ATOM 19 O6 G B 34 3.224 6.345 39.043 1.00122.42 O
ATOM 20 N1 G B 34 2.160 5.113 37.431 1.00121.68 N
ATOM 21 C2 G B 34 2.153 4.271 36.337 1.00121.75 C
ATOM 22 N2 G B 34 0.958 3.900 35.852 1.00121.73 N
ATOM 23 N3 G B 34 3.256 3.818 35.759 1.00121.31 N
ATOM 24 C4 G B 34 4.373 4.278 36.371 1.00121.16 C
ATOM 25 P A B 35 7.949 1.810 30.800 1.00122.40 P
ATOM 26 OP1 A B 35 9.357 1.556 31.167 1.00122.07 O
ATOM 27 OP2 A B 35 7.655 2.945 29.893 1.00122.05 O
ATOM 28 O5' A B 35 7.269 0.481 30.193 1.00121.88 O
TER
Atoms:
C2: (13.784,0.257,42.022)
OP1: (7.569,2.250,42.644)
OP2: (6.016,3.180,40.844)
C4: (12.998,-0.887,43.896)
O5': (8.425,2.828,40.338)
C3': (10.549,1.717,38.680)
C1': (12.257,0.906,40.125)
O4': (12.065,2.293,40.357)
C5': (9.758,2.848,40.875)
P: (7.175,2.338,41.219)
O2: (14.724,0.781,41.419)
C4': (10.810,2.737,39.779)
C2': (11.072,0.423,39.285)
O2': (11.525,-0.487,38.306)
N1: (12.484,0.248,41.471)
N3: (14.004,-0.320,43.229)
N4: (13.273,-1.444,45.085)
C6: (11.455,-0.336,42.172)
C5: (11.669,-0.905,43.367)
O3': (11.276,2.078,37.506)
OP1: (7.569,2.250,42.644)
OP2: (6.016,3.180,40.844)
C4: (12.998,-0.887,43.896)
O5': (8.425,2.828,40.338)
C3': (10.549,1.717,38.680)
C1': (12.257,0.906,40.125)
O4': (12.065,2.293,40.357)
C5': (9.758,2.848,40.875)
P: (7.175,2.338,41.219)
O2: (14.724,0.781,41.419)
C4': (10.810,2.737,39.779)
C2': (11.072,0.423,39.285)
O2': (11.525,-0.487,38.306)
N1: (12.484,0.248,41.471)
N3: (14.004,-0.320,43.229)
N4: (13.273,-1.444,45.085)
C6: (11.455,-0.336,42.172)
C5: (11.669,-0.905,43.367)
O3': (11.276,2.078,37.506)
OP1: (9.618,0.934,36.016)
OP2: (11.695,2.069,35.062)
C3': (7.419,3.217,32.953)
C1': (6.029,3.117,34.884)
C5': (9.182,3.861,34.758)
O6: (3.224,6.345,39.043)
O4': (7.252,2.466,35.187)
C8: (6.472,4.657,36.880)
C2: (2.153,4.271,36.337)
C6: (3.311,5.591,38.066)
C5: (4.488,5.113,37.456)
C4: (4.373,4.278,36.371)
P: (10.594,2.048,36.054)
C4': (8.235,2.810,34.181)
C2': (6.184,3.886,33.568)
O2': (4.997,3.816,32.792)
N1: (2.160,5.113,37.431)
N2: (0.958,3.900,35.852)
N3: (3.256,3.818,35.759)
N7: (5.817,5.348,37.769)
N9: (5.655,3.980,36.002)
O5': (9.794,3.438,35.990)
O3': (7.132,2.052,32.159)
OP2: (11.695,2.069,35.062)
C3': (7.419,3.217,32.953)
C1': (6.029,3.117,34.884)
C5': (9.182,3.861,34.758)
O6: (3.224,6.345,39.043)
O4': (7.252,2.466,35.187)
C8: (6.472,4.657,36.880)
C2: (2.153,4.271,36.337)
C6: (3.311,5.591,38.066)
C5: (4.488,5.113,37.456)
C4: (4.373,4.278,36.371)
P: (10.594,2.048,36.054)
C4': (8.235,2.810,34.181)
C2': (6.184,3.886,33.568)
O2': (4.997,3.816,32.792)
N1: (2.160,5.113,37.431)
N2: (0.958,3.900,35.852)
N3: (3.256,3.818,35.759)
N7: (5.817,5.348,37.769)
N9: (5.655,3.980,36.002)
O5': (9.794,3.438,35.990)
O3': (7.132,2.052,32.159)
Image (generated by PyMOL):