Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.167 99.385 121.812 1.00 77.28 O
ATOM 2 P C A 559 -4.525 98.373 123.008 1.00 80.91 P
ATOM 3 OP1 C A 559 -3.736 98.801 124.195 1.00 80.19 O
ATOM 4 OP2 C A 559 -4.404 96.969 122.513 1.00 79.43 O
ATOM 5 O5' C A 559 -6.066 98.672 123.285 1.00 80.52 O
ATOM 6 C5' C A 559 -6.524 100.015 123.554 1.00 81.07 C
ATOM 7 C4' C A 559 -8.024 100.094 123.394 1.00 81.61 C
ATOM 8 O4' C A 559 -8.367 99.790 122.017 1.00 80.61 O
ATOM 9 C3' C A 559 -8.816 99.082 124.209 1.00 82.27 C
ATOM 10 O3' C A 559 -9.041 99.515 125.545 1.00 83.63 O
ATOM 11 C2' C A 559 -10.102 98.956 123.407 1.00 81.25 C
ATOM 12 O2' C A 559 -10.991 100.034 123.622 1.00 80.74 O
ATOM 13 C1' C A 559 -9.558 99.020 121.979 1.00 80.03 C
ATOM 14 N1 C A 559 -9.230 97.691 121.430 1.00 78.48 N
ATOM 15 C2 C A 559 -10.264 96.899 120.911 1.00 78.50 C
ATOM 16 O2 C A 559 -11.429 97.331 120.939 1.00 78.75 O
ATOM 17 N3 C A 559 -9.969 95.684 120.393 1.00 78.74 N
ATOM 18 C4 C A 559 -8.706 95.250 120.382 1.00 77.51 C
ATOM 19 N4 C A 559 -8.464 94.048 119.850 1.00 76.24 N
ATOM 20 C5 C A 559 -7.636 96.030 120.913 1.00 76.95 C
ATOM 21 C6 C A 559 -7.940 97.231 121.421 1.00 77.15 C
ATOM 22 P G A 560 -8.960 98.455 126.749 1.00 85.02 P
ATOM 23 OP1 G A 560 -9.481 99.158 127.945 1.00 84.39 O
ATOM 24 OP2 G A 560 -7.592 97.873 126.779 1.00 84.98 O
ATOM 25 O5' G A 560 -9.993 97.308 126.336 1.00 86.84 O
TER
ATOM 1 O3' C B 573 -10.754 84.643 116.374 1.00 70.97 O
ATOM 2 P C B 574 -10.797 85.437 114.979 1.00 71.22 P
ATOM 3 OP1 C B 574 -11.831 84.826 114.101 1.00 69.65 O
ATOM 4 OP2 C B 574 -9.396 85.520 114.506 1.00 73.17 O
ATOM 5 O5' C B 574 -11.301 86.893 115.381 1.00 68.46 O
ATOM 6 C5' C B 574 -12.633 87.090 115.862 1.00 66.72 C
ATOM 7 C4' C B 574 -12.791 88.481 116.403 1.00 66.76 C
ATOM 8 O4' C B 574 -11.901 88.678 117.526 1.00 67.53 O
ATOM 9 C3' C B 574 -12.415 89.585 115.441 1.00 67.73 C
ATOM 10 O3' C B 574 -13.496 89.838 114.569 1.00 69.81 O
ATOM 11 C2' C B 574 -12.125 90.756 116.374 1.00 68.76 C
ATOM 12 O2' C B 574 -13.278 91.462 116.792 1.00 68.42 O
ATOM 13 C1' C B 574 -11.493 90.039 117.573 1.00 69.46 C
ATOM 14 N1 C B 574 -10.015 90.096 117.623 1.00 71.73 N
ATOM 15 C2 C B 574 -9.395 91.207 118.232 1.00 71.25 C
ATOM 16 O2 C B 574 -10.100 92.127 118.685 1.00 70.13 O
ATOM 17 N3 C B 574 -8.048 91.250 118.301 1.00 71.60 N
ATOM 18 C4 C B 574 -7.318 90.256 117.786 1.00 72.60 C
ATOM 19 N4 C B 574 -5.991 90.345 117.882 1.00 74.77 N
ATOM 20 C5 C B 574 -7.916 89.127 117.150 1.00 71.66 C
ATOM 21 C6 C B 574 -9.252 89.087 117.094 1.00 72.23 C
ATOM 22 P A B 575 -13.226 90.495 113.137 1.00 71.92 P
ATOM 23 OP1 A B 575 -12.669 91.854 113.349 1.00 72.25 O
ATOM 24 OP2 A B 575 -14.461 90.326 112.333 1.00 72.85 O
ATOM 25 O5' A B 575 -12.113 89.565 112.490 1.00 71.76 O
TER
ATOM 2 P C A 559 -4.525 98.373 123.008 1.00 80.91 P
ATOM 3 OP1 C A 559 -3.736 98.801 124.195 1.00 80.19 O
ATOM 4 OP2 C A 559 -4.404 96.969 122.513 1.00 79.43 O
ATOM 5 O5' C A 559 -6.066 98.672 123.285 1.00 80.52 O
ATOM 6 C5' C A 559 -6.524 100.015 123.554 1.00 81.07 C
ATOM 7 C4' C A 559 -8.024 100.094 123.394 1.00 81.61 C
ATOM 8 O4' C A 559 -8.367 99.790 122.017 1.00 80.61 O
ATOM 9 C3' C A 559 -8.816 99.082 124.209 1.00 82.27 C
ATOM 10 O3' C A 559 -9.041 99.515 125.545 1.00 83.63 O
ATOM 11 C2' C A 559 -10.102 98.956 123.407 1.00 81.25 C
ATOM 12 O2' C A 559 -10.991 100.034 123.622 1.00 80.74 O
ATOM 13 C1' C A 559 -9.558 99.020 121.979 1.00 80.03 C
ATOM 14 N1 C A 559 -9.230 97.691 121.430 1.00 78.48 N
ATOM 15 C2 C A 559 -10.264 96.899 120.911 1.00 78.50 C
ATOM 16 O2 C A 559 -11.429 97.331 120.939 1.00 78.75 O
ATOM 17 N3 C A 559 -9.969 95.684 120.393 1.00 78.74 N
ATOM 18 C4 C A 559 -8.706 95.250 120.382 1.00 77.51 C
ATOM 19 N4 C A 559 -8.464 94.048 119.850 1.00 76.24 N
ATOM 20 C5 C A 559 -7.636 96.030 120.913 1.00 76.95 C
ATOM 21 C6 C A 559 -7.940 97.231 121.421 1.00 77.15 C
ATOM 22 P G A 560 -8.960 98.455 126.749 1.00 85.02 P
ATOM 23 OP1 G A 560 -9.481 99.158 127.945 1.00 84.39 O
ATOM 24 OP2 G A 560 -7.592 97.873 126.779 1.00 84.98 O
ATOM 25 O5' G A 560 -9.993 97.308 126.336 1.00 86.84 O
TER
ATOM 1 O3' C B 573 -10.754 84.643 116.374 1.00 70.97 O
ATOM 2 P C B 574 -10.797 85.437 114.979 1.00 71.22 P
ATOM 3 OP1 C B 574 -11.831 84.826 114.101 1.00 69.65 O
ATOM 4 OP2 C B 574 -9.396 85.520 114.506 1.00 73.17 O
ATOM 5 O5' C B 574 -11.301 86.893 115.381 1.00 68.46 O
ATOM 6 C5' C B 574 -12.633 87.090 115.862 1.00 66.72 C
ATOM 7 C4' C B 574 -12.791 88.481 116.403 1.00 66.76 C
ATOM 8 O4' C B 574 -11.901 88.678 117.526 1.00 67.53 O
ATOM 9 C3' C B 574 -12.415 89.585 115.441 1.00 67.73 C
ATOM 10 O3' C B 574 -13.496 89.838 114.569 1.00 69.81 O
ATOM 11 C2' C B 574 -12.125 90.756 116.374 1.00 68.76 C
ATOM 12 O2' C B 574 -13.278 91.462 116.792 1.00 68.42 O
ATOM 13 C1' C B 574 -11.493 90.039 117.573 1.00 69.46 C
ATOM 14 N1 C B 574 -10.015 90.096 117.623 1.00 71.73 N
ATOM 15 C2 C B 574 -9.395 91.207 118.232 1.00 71.25 C
ATOM 16 O2 C B 574 -10.100 92.127 118.685 1.00 70.13 O
ATOM 17 N3 C B 574 -8.048 91.250 118.301 1.00 71.60 N
ATOM 18 C4 C B 574 -7.318 90.256 117.786 1.00 72.60 C
ATOM 19 N4 C B 574 -5.991 90.345 117.882 1.00 74.77 N
ATOM 20 C5 C B 574 -7.916 89.127 117.150 1.00 71.66 C
ATOM 21 C6 C B 574 -9.252 89.087 117.094 1.00 72.23 C
ATOM 22 P A B 575 -13.226 90.495 113.137 1.00 71.92 P
ATOM 23 OP1 A B 575 -12.669 91.854 113.349 1.00 72.25 O
ATOM 24 OP2 A B 575 -14.461 90.326 112.333 1.00 72.85 O
ATOM 25 O5' A B 575 -12.113 89.565 112.490 1.00 71.76 O
TER
Atoms:
C2: (-10.264,96.899,120.911)
OP1: (-3.736,98.801,124.195)
OP2: (-4.404,96.969,122.513)
C4: (-8.706,95.250,120.382)
O5': (-6.066,98.672,123.285)
C3': (-8.816,99.082,124.209)
C1': (-9.558,99.020,121.979)
O4': (-8.367,99.790,122.017)
C5': (-6.524,100.015,123.554)
P: (-4.525,98.373,123.008)
O2: (-11.429,97.331,120.939)
C4': (-8.024,100.094,123.394)
C2': (-10.102,98.956,123.407)
O2': (-10.991,100.034,123.622)
N1: (-9.230,97.691,121.430)
N3: (-9.969,95.684,120.393)
N4: (-8.464,94.048,119.850)
C6: (-7.940,97.231,121.421)
C5: (-7.636,96.030,120.913)
O3': (-9.041,99.515,125.545)
OP1: (-3.736,98.801,124.195)
OP2: (-4.404,96.969,122.513)
C4: (-8.706,95.250,120.382)
O5': (-6.066,98.672,123.285)
C3': (-8.816,99.082,124.209)
C1': (-9.558,99.020,121.979)
O4': (-8.367,99.790,122.017)
C5': (-6.524,100.015,123.554)
P: (-4.525,98.373,123.008)
O2: (-11.429,97.331,120.939)
C4': (-8.024,100.094,123.394)
C2': (-10.102,98.956,123.407)
O2': (-10.991,100.034,123.622)
N1: (-9.230,97.691,121.430)
N3: (-9.969,95.684,120.393)
N4: (-8.464,94.048,119.850)
C6: (-7.940,97.231,121.421)
C5: (-7.636,96.030,120.913)
O3': (-9.041,99.515,125.545)
C2: (-9.395,91.207,118.232)
OP1: (-11.831,84.826,114.101)
OP2: (-9.396,85.520,114.506)
C4: (-7.318,90.256,117.786)
O5': (-11.301,86.893,115.381)
C3': (-12.415,89.585,115.441)
C1': (-11.493,90.039,117.573)
O4': (-11.901,88.678,117.526)
C5': (-12.633,87.090,115.862)
P: (-10.797,85.437,114.979)
O2: (-10.100,92.127,118.685)
C4': (-12.791,88.481,116.403)
C2': (-12.125,90.756,116.374)
O2': (-13.278,91.462,116.792)
N1: (-10.015,90.096,117.623)
N3: (-8.048,91.250,118.301)
N4: (-5.991,90.345,117.882)
C6: (-9.252,89.087,117.094)
C5: (-7.916,89.127,117.150)
O3': (-13.496,89.838,114.569)
OP1: (-11.831,84.826,114.101)
OP2: (-9.396,85.520,114.506)
C4: (-7.318,90.256,117.786)
O5': (-11.301,86.893,115.381)
C3': (-12.415,89.585,115.441)
C1': (-11.493,90.039,117.573)
O4': (-11.901,88.678,117.526)
C5': (-12.633,87.090,115.862)
P: (-10.797,85.437,114.979)
O2: (-10.100,92.127,118.685)
C4': (-12.791,88.481,116.403)
C2': (-12.125,90.756,116.374)
O2': (-13.278,91.462,116.792)
N1: (-10.015,90.096,117.623)
N3: (-8.048,91.250,118.301)
N4: (-5.991,90.345,117.882)
C6: (-9.252,89.087,117.094)
C5: (-7.916,89.127,117.150)
O3': (-13.496,89.838,114.569)
Image (generated by PyMOL):