Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12506:12507
Extra
PDB:
ATOM 1 O3' G A2505 24.900 -63.579 55.785 1.00 53.44 O
ATOM 2 P G A2506 24.436 -62.346 54.866 1.00 58.12 P
ATOM 3 OP1 G A2506 25.067 -62.486 53.566 1.00 58.25 O
ATOM 4 OP2 G A2506 24.672 -61.112 55.651 1.00 57.62 O
ATOM 5 O5' G A2506 22.890 -62.598 54.704 1.00 58.33 O
ATOM 6 C5' G A2506 22.395 -63.378 53.631 1.00 58.75 C
ATOM 7 C4' G A2506 20.916 -63.266 53.566 1.00 58.84 C
ATOM 8 O4' G A2506 20.424 -63.026 54.911 1.00 58.66 O
ATOM 9 C3' G A2506 20.385 -62.130 52.697 1.00 58.61 C
ATOM 10 O3' G A2506 19.270 -62.595 51.940 1.00 58.96 O
ATOM 11 C2' G A2506 19.929 -61.088 53.715 1.00 58.19 C
ATOM 12 O2' G A2506 18.858 -60.292 53.298 1.00 58.09 O
ATOM 13 C1' G A2506 19.552 -61.926 54.922 1.00 58.38 C
ATOM 14 N9 G A2506 19.747 -61.201 56.164 1.00 58.00 N
ATOM 15 C8 G A2506 20.937 -61.083 56.813 1.00 57.80 C
ATOM 16 N7 G A2506 20.864 -60.297 57.856 1.00 57.46 N
ATOM 17 C5 G A2506 19.551 -59.862 57.893 1.00 57.44 C
ATOM 18 C6 G A2506 18.893 -58.984 58.801 1.00 57.15 C
ATOM 19 O6 G A2506 19.321 -58.390 59.792 1.00 56.86 O
ATOM 20 N1 G A2506 17.562 -58.838 58.451 1.00 57.27 N
ATOM 21 C2 G A2506 16.990 -59.446 57.389 1.00 57.60 C
ATOM 22 N2 G A2506 15.729 -59.165 57.235 1.00 57.67 N
ATOM 23 N3 G A2506 17.570 -60.240 56.534 1.00 57.87 N
ATOM 24 C4 G A2506 18.853 -60.413 56.839 1.00 57.77 C
ATOM 25 P C A2507 18.965 -62.032 50.460 1.00 49.54 P
ATOM 26 OP1 C A2507 18.472 -60.638 50.627 1.00 49.11 O
ATOM 27 OP2 C A2507 18.062 -63.057 49.793 1.00 50.07 O
ATOM 28 O5' C A2507 20.383 -61.974 49.732 1.00 49.48 O
TER
ATOM 1 O3' G B2506 19.270 -62.595 51.940 1.00 58.96 O
ATOM 2 P C B2507 18.965 -62.032 50.460 1.00 49.54 P
ATOM 3 OP1 C B2507 18.472 -60.638 50.627 1.00 49.11 O
ATOM 4 OP2 C B2507 18.062 -63.057 49.793 1.00 50.07 O
ATOM 5 O5' C B2507 20.383 -61.974 49.732 1.00 49.48 O
ATOM 6 C5' C B2507 21.107 -63.121 49.337 1.00 49.85 C
ATOM 7 C4' C B2507 22.131 -62.763 48.281 1.00 49.79 C
ATOM 8 O4' C B2507 21.455 -62.567 47.030 1.00 49.96 O
ATOM 9 C3' C B2507 22.889 -61.449 48.482 1.00 49.26 C
ATOM 10 O3' C B2507 23.976 -61.576 49.343 1.00 49.09 O
ATOM 11 C2' C B2507 23.296 -61.051 47.073 1.00 49.29 C
ATOM 12 O2' C B2507 24.459 -61.748 46.663 1.00 49.49 O
ATOM 13 C1' C B2507 22.115 -61.561 46.265 1.00 49.69 C
ATOM 14 N1 C B2507 21.153 -60.500 45.962 1.00 49.47 N
ATOM 15 C2 C B2507 21.522 -59.558 45.044 1.00 49.28 C
ATOM 16 O2 C B2507 22.647 -59.658 44.552 1.00 49.29 O
ATOM 17 N3 C B2507 20.659 -58.553 44.755 1.00 49.09 N
ATOM 18 C4 C B2507 19.466 -58.528 45.337 1.00 49.11 C
ATOM 19 N4 C B2507 18.649 -57.548 45.046 1.00 48.94 N
ATOM 20 C5 C B2507 19.078 -59.494 46.284 1.00 49.31 C
ATOM 21 C6 C B2507 19.949 -60.457 46.569 1.00 49.48 C
ATOM 22 P C B2508 24.356 -60.394 50.334 1.00 44.40 P
ATOM 23 OP1 C B2508 25.367 -60.929 51.221 1.00 44.39 O
ATOM 24 OP2 C B2508 23.105 -59.878 50.923 1.00 44.26 O
ATOM 25 O5' C B2508 25.003 -59.276 49.383 1.00 44.12 O
TER
ATOM 2 P G A2506 24.436 -62.346 54.866 1.00 58.12 P
ATOM 3 OP1 G A2506 25.067 -62.486 53.566 1.00 58.25 O
ATOM 4 OP2 G A2506 24.672 -61.112 55.651 1.00 57.62 O
ATOM 5 O5' G A2506 22.890 -62.598 54.704 1.00 58.33 O
ATOM 6 C5' G A2506 22.395 -63.378 53.631 1.00 58.75 C
ATOM 7 C4' G A2506 20.916 -63.266 53.566 1.00 58.84 C
ATOM 8 O4' G A2506 20.424 -63.026 54.911 1.00 58.66 O
ATOM 9 C3' G A2506 20.385 -62.130 52.697 1.00 58.61 C
ATOM 10 O3' G A2506 19.270 -62.595 51.940 1.00 58.96 O
ATOM 11 C2' G A2506 19.929 -61.088 53.715 1.00 58.19 C
ATOM 12 O2' G A2506 18.858 -60.292 53.298 1.00 58.09 O
ATOM 13 C1' G A2506 19.552 -61.926 54.922 1.00 58.38 C
ATOM 14 N9 G A2506 19.747 -61.201 56.164 1.00 58.00 N
ATOM 15 C8 G A2506 20.937 -61.083 56.813 1.00 57.80 C
ATOM 16 N7 G A2506 20.864 -60.297 57.856 1.00 57.46 N
ATOM 17 C5 G A2506 19.551 -59.862 57.893 1.00 57.44 C
ATOM 18 C6 G A2506 18.893 -58.984 58.801 1.00 57.15 C
ATOM 19 O6 G A2506 19.321 -58.390 59.792 1.00 56.86 O
ATOM 20 N1 G A2506 17.562 -58.838 58.451 1.00 57.27 N
ATOM 21 C2 G A2506 16.990 -59.446 57.389 1.00 57.60 C
ATOM 22 N2 G A2506 15.729 -59.165 57.235 1.00 57.67 N
ATOM 23 N3 G A2506 17.570 -60.240 56.534 1.00 57.87 N
ATOM 24 C4 G A2506 18.853 -60.413 56.839 1.00 57.77 C
ATOM 25 P C A2507 18.965 -62.032 50.460 1.00 49.54 P
ATOM 26 OP1 C A2507 18.472 -60.638 50.627 1.00 49.11 O
ATOM 27 OP2 C A2507 18.062 -63.057 49.793 1.00 50.07 O
ATOM 28 O5' C A2507 20.383 -61.974 49.732 1.00 49.48 O
TER
ATOM 1 O3' G B2506 19.270 -62.595 51.940 1.00 58.96 O
ATOM 2 P C B2507 18.965 -62.032 50.460 1.00 49.54 P
ATOM 3 OP1 C B2507 18.472 -60.638 50.627 1.00 49.11 O
ATOM 4 OP2 C B2507 18.062 -63.057 49.793 1.00 50.07 O
ATOM 5 O5' C B2507 20.383 -61.974 49.732 1.00 49.48 O
ATOM 6 C5' C B2507 21.107 -63.121 49.337 1.00 49.85 C
ATOM 7 C4' C B2507 22.131 -62.763 48.281 1.00 49.79 C
ATOM 8 O4' C B2507 21.455 -62.567 47.030 1.00 49.96 O
ATOM 9 C3' C B2507 22.889 -61.449 48.482 1.00 49.26 C
ATOM 10 O3' C B2507 23.976 -61.576 49.343 1.00 49.09 O
ATOM 11 C2' C B2507 23.296 -61.051 47.073 1.00 49.29 C
ATOM 12 O2' C B2507 24.459 -61.748 46.663 1.00 49.49 O
ATOM 13 C1' C B2507 22.115 -61.561 46.265 1.00 49.69 C
ATOM 14 N1 C B2507 21.153 -60.500 45.962 1.00 49.47 N
ATOM 15 C2 C B2507 21.522 -59.558 45.044 1.00 49.28 C
ATOM 16 O2 C B2507 22.647 -59.658 44.552 1.00 49.29 O
ATOM 17 N3 C B2507 20.659 -58.553 44.755 1.00 49.09 N
ATOM 18 C4 C B2507 19.466 -58.528 45.337 1.00 49.11 C
ATOM 19 N4 C B2507 18.649 -57.548 45.046 1.00 48.94 N
ATOM 20 C5 C B2507 19.078 -59.494 46.284 1.00 49.31 C
ATOM 21 C6 C B2507 19.949 -60.457 46.569 1.00 49.48 C
ATOM 22 P C B2508 24.356 -60.394 50.334 1.00 44.40 P
ATOM 23 OP1 C B2508 25.367 -60.929 51.221 1.00 44.39 O
ATOM 24 OP2 C B2508 23.105 -59.878 50.923 1.00 44.26 O
ATOM 25 O5' C B2508 25.003 -59.276 49.383 1.00 44.12 O
TER
Atoms:
OP1: (25.067,-62.486,53.566)
OP2: (24.672,-61.112,55.651)
C3': (20.385,-62.130,52.697)
C1': (19.552,-61.926,54.922)
C5': (22.395,-63.378,53.631)
O6: (19.321,-58.390,59.792)
O4': (20.424,-63.026,54.911)
C8: (20.937,-61.083,56.813)
C2: (16.990,-59.446,57.389)
C6: (18.893,-58.984,58.801)
C5: (19.551,-59.862,57.893)
C4: (18.853,-60.413,56.839)
P: (24.436,-62.346,54.866)
C4': (20.916,-63.266,53.566)
C2': (19.929,-61.088,53.715)
O2': (18.858,-60.292,53.298)
N1: (17.562,-58.838,58.451)
N2: (15.729,-59.165,57.235)
N3: (17.570,-60.240,56.534)
N7: (20.864,-60.297,57.856)
N9: (19.747,-61.201,56.164)
O5': (22.890,-62.598,54.704)
O3': (19.270,-62.595,51.940)
OP2: (24.672,-61.112,55.651)
C3': (20.385,-62.130,52.697)
C1': (19.552,-61.926,54.922)
C5': (22.395,-63.378,53.631)
O6: (19.321,-58.390,59.792)
O4': (20.424,-63.026,54.911)
C8: (20.937,-61.083,56.813)
C2: (16.990,-59.446,57.389)
C6: (18.893,-58.984,58.801)
C5: (19.551,-59.862,57.893)
C4: (18.853,-60.413,56.839)
P: (24.436,-62.346,54.866)
C4': (20.916,-63.266,53.566)
C2': (19.929,-61.088,53.715)
O2': (18.858,-60.292,53.298)
N1: (17.562,-58.838,58.451)
N2: (15.729,-59.165,57.235)
N3: (17.570,-60.240,56.534)
N7: (20.864,-60.297,57.856)
N9: (19.747,-61.201,56.164)
O5': (22.890,-62.598,54.704)
O3': (19.270,-62.595,51.940)
C2: (21.522,-59.558,45.044)
OP1: (18.472,-60.638,50.627)
OP2: (18.062,-63.057,49.793)
C4: (19.466,-58.528,45.337)
O5': (20.383,-61.974,49.732)
C3': (22.889,-61.449,48.482)
C1': (22.115,-61.561,46.265)
O4': (21.455,-62.567,47.030)
C5': (21.107,-63.121,49.337)
P: (18.965,-62.032,50.460)
O2: (22.647,-59.658,44.552)
C4': (22.131,-62.763,48.281)
C2': (23.296,-61.051,47.073)
O2': (24.459,-61.748,46.663)
N1: (21.153,-60.500,45.962)
N3: (20.659,-58.553,44.755)
N4: (18.649,-57.548,45.046)
C6: (19.949,-60.457,46.569)
C5: (19.078,-59.494,46.284)
O3': (23.976,-61.576,49.343)
OP1: (18.472,-60.638,50.627)
OP2: (18.062,-63.057,49.793)
C4: (19.466,-58.528,45.337)
O5': (20.383,-61.974,49.732)
C3': (22.889,-61.449,48.482)
C1': (22.115,-61.561,46.265)
O4': (21.455,-62.567,47.030)
C5': (21.107,-63.121,49.337)
P: (18.965,-62.032,50.460)
O2: (22.647,-59.658,44.552)
C4': (22.131,-62.763,48.281)
C2': (23.296,-61.051,47.073)
O2': (24.459,-61.748,46.663)
N1: (21.153,-60.500,45.962)
N3: (20.659,-58.553,44.755)
N4: (18.649,-57.548,45.046)
C6: (19.949,-60.457,46.569)
C5: (19.078,-59.494,46.284)
O3': (23.976,-61.576,49.343)
Image (generated by PyMOL):