Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0551:0582
Extra
PDB:
ATOM 1 O3' A A 550 -15.846 99.493 95.642 1.00 55.82 O
ATOM 2 P C A 551 -14.993 98.366 96.388 1.00 55.83 P
ATOM 3 OP1 C A 551 -15.680 97.068 96.155 1.00 56.53 O
ATOM 4 OP2 C A 551 -14.737 98.833 97.777 1.00 53.44 O
ATOM 5 O5' C A 551 -13.621 98.326 95.584 1.00 54.66 O
ATOM 6 C5' C A 551 -13.594 97.947 94.204 1.00 52.26 C
ATOM 7 C4' C A 551 -12.227 98.198 93.631 1.00 52.44 C
ATOM 8 O4' C A 551 -11.924 99.610 93.715 1.00 52.41 O
ATOM 9 C3' C A 551 -11.085 97.540 94.378 1.00 53.25 C
ATOM 10 O3' C A 551 -10.941 96.190 93.967 1.00 55.59 O
ATOM 11 C2' C A 551 -9.892 98.393 93.968 1.00 52.78 C
ATOM 12 O2' C A 551 -9.379 98.039 92.699 1.00 52.85 O
ATOM 13 C1' C A 551 -10.529 99.783 93.893 1.00 52.16 C
ATOM 14 N1 C A 551 -10.306 100.629 95.076 1.00 52.05 N
ATOM 15 C2 C A 551 -9.191 101.473 95.095 1.00 52.46 C
ATOM 16 O2 C A 551 -8.418 101.468 94.121 1.00 52.55 O
ATOM 17 N3 C A 551 -8.983 102.269 96.170 1.00 51.66 N
ATOM 18 C4 C A 551 -9.832 102.237 97.197 1.00 51.49 C
ATOM 19 N4 C A 551 -9.591 103.040 98.234 1.00 52.01 N
ATOM 20 C5 C A 551 -10.970 101.383 97.207 1.00 51.43 C
ATOM 21 C6 C A 551 -11.167 100.604 96.138 1.00 51.41 C
ATOM 22 P G A 552 -10.887 95.025 95.068 1.00 56.80 P
ATOM 23 OP1 G A 552 -10.894 93.730 94.332 1.00 55.78 O
ATOM 24 OP2 G A 552 -11.933 95.303 96.095 1.00 55.27 O
ATOM 25 O5' G A 552 -9.455 95.208 95.739 1.00 56.64 O
TER
ATOM 1 O3' A B 581 0.266 107.006 97.392 1.00 53.41 O
ATOM 2 P C B 582 -0.871 107.916 96.715 1.00 52.29 P
ATOM 3 OP1 C B 582 -0.314 109.285 96.593 1.00 52.63 O
ATOM 4 OP2 C B 582 -2.142 107.709 97.446 1.00 54.01 O
ATOM 5 O5' C B 582 -1.022 107.296 95.258 1.00 51.03 O
ATOM 6 C5' C B 582 0.122 107.181 94.409 1.00 51.90 C
ATOM 7 C4' C B 582 -0.159 106.250 93.262 1.00 52.56 C
ATOM 8 O4' C B 582 -0.484 104.931 93.771 1.00 54.13 O
ATOM 9 C3' C B 582 -1.349 106.603 92.393 1.00 52.17 C
ATOM 10 O3' C B 582 -1.034 107.615 91.453 1.00 50.72 O
ATOM 11 C2' C B 582 -1.647 105.268 91.731 1.00 53.43 C
ATOM 12 O2' C B 582 -0.720 104.957 90.711 1.00 52.68 O
ATOM 13 C1' C B 582 -1.423 104.309 92.902 1.00 55.32 C
ATOM 14 N1 C B 582 -2.671 104.047 93.651 1.00 56.97 N
ATOM 15 C2 C B 582 -3.541 103.031 93.197 1.00 58.34 C
ATOM 16 O2 C B 582 -3.217 102.345 92.211 1.00 59.77 O
ATOM 17 N3 C B 582 -4.706 102.823 93.847 1.00 58.56 N
ATOM 18 C4 C B 582 -5.015 103.562 94.914 1.00 58.32 C
ATOM 19 N4 C B 582 -6.185 103.332 95.512 1.00 58.62 N
ATOM 20 C5 C B 582 -4.140 104.576 95.413 1.00 57.59 C
ATOM 21 C6 C B 582 -2.994 104.783 94.758 1.00 56.26 C
ATOM 22 P U B 583 -2.189 108.608 90.945 1.00 50.41 P
ATOM 23 OP1 U B 583 -1.629 109.402 89.826 1.00 49.25 O
ATOM 24 OP2 U B 583 -2.773 109.305 92.115 1.00 48.37 O
ATOM 25 O5' U B 583 -3.286 107.621 90.352 1.00 49.78 O
TER
ATOM 2 P C A 551 -14.993 98.366 96.388 1.00 55.83 P
ATOM 3 OP1 C A 551 -15.680 97.068 96.155 1.00 56.53 O
ATOM 4 OP2 C A 551 -14.737 98.833 97.777 1.00 53.44 O
ATOM 5 O5' C A 551 -13.621 98.326 95.584 1.00 54.66 O
ATOM 6 C5' C A 551 -13.594 97.947 94.204 1.00 52.26 C
ATOM 7 C4' C A 551 -12.227 98.198 93.631 1.00 52.44 C
ATOM 8 O4' C A 551 -11.924 99.610 93.715 1.00 52.41 O
ATOM 9 C3' C A 551 -11.085 97.540 94.378 1.00 53.25 C
ATOM 10 O3' C A 551 -10.941 96.190 93.967 1.00 55.59 O
ATOM 11 C2' C A 551 -9.892 98.393 93.968 1.00 52.78 C
ATOM 12 O2' C A 551 -9.379 98.039 92.699 1.00 52.85 O
ATOM 13 C1' C A 551 -10.529 99.783 93.893 1.00 52.16 C
ATOM 14 N1 C A 551 -10.306 100.629 95.076 1.00 52.05 N
ATOM 15 C2 C A 551 -9.191 101.473 95.095 1.00 52.46 C
ATOM 16 O2 C A 551 -8.418 101.468 94.121 1.00 52.55 O
ATOM 17 N3 C A 551 -8.983 102.269 96.170 1.00 51.66 N
ATOM 18 C4 C A 551 -9.832 102.237 97.197 1.00 51.49 C
ATOM 19 N4 C A 551 -9.591 103.040 98.234 1.00 52.01 N
ATOM 20 C5 C A 551 -10.970 101.383 97.207 1.00 51.43 C
ATOM 21 C6 C A 551 -11.167 100.604 96.138 1.00 51.41 C
ATOM 22 P G A 552 -10.887 95.025 95.068 1.00 56.80 P
ATOM 23 OP1 G A 552 -10.894 93.730 94.332 1.00 55.78 O
ATOM 24 OP2 G A 552 -11.933 95.303 96.095 1.00 55.27 O
ATOM 25 O5' G A 552 -9.455 95.208 95.739 1.00 56.64 O
TER
ATOM 1 O3' A B 581 0.266 107.006 97.392 1.00 53.41 O
ATOM 2 P C B 582 -0.871 107.916 96.715 1.00 52.29 P
ATOM 3 OP1 C B 582 -0.314 109.285 96.593 1.00 52.63 O
ATOM 4 OP2 C B 582 -2.142 107.709 97.446 1.00 54.01 O
ATOM 5 O5' C B 582 -1.022 107.296 95.258 1.00 51.03 O
ATOM 6 C5' C B 582 0.122 107.181 94.409 1.00 51.90 C
ATOM 7 C4' C B 582 -0.159 106.250 93.262 1.00 52.56 C
ATOM 8 O4' C B 582 -0.484 104.931 93.771 1.00 54.13 O
ATOM 9 C3' C B 582 -1.349 106.603 92.393 1.00 52.17 C
ATOM 10 O3' C B 582 -1.034 107.615 91.453 1.00 50.72 O
ATOM 11 C2' C B 582 -1.647 105.268 91.731 1.00 53.43 C
ATOM 12 O2' C B 582 -0.720 104.957 90.711 1.00 52.68 O
ATOM 13 C1' C B 582 -1.423 104.309 92.902 1.00 55.32 C
ATOM 14 N1 C B 582 -2.671 104.047 93.651 1.00 56.97 N
ATOM 15 C2 C B 582 -3.541 103.031 93.197 1.00 58.34 C
ATOM 16 O2 C B 582 -3.217 102.345 92.211 1.00 59.77 O
ATOM 17 N3 C B 582 -4.706 102.823 93.847 1.00 58.56 N
ATOM 18 C4 C B 582 -5.015 103.562 94.914 1.00 58.32 C
ATOM 19 N4 C B 582 -6.185 103.332 95.512 1.00 58.62 N
ATOM 20 C5 C B 582 -4.140 104.576 95.413 1.00 57.59 C
ATOM 21 C6 C B 582 -2.994 104.783 94.758 1.00 56.26 C
ATOM 22 P U B 583 -2.189 108.608 90.945 1.00 50.41 P
ATOM 23 OP1 U B 583 -1.629 109.402 89.826 1.00 49.25 O
ATOM 24 OP2 U B 583 -2.773 109.305 92.115 1.00 48.37 O
ATOM 25 O5' U B 583 -3.286 107.621 90.352 1.00 49.78 O
TER
Atoms:
C2: (-9.191,101.473,95.095)
OP1: (-15.680,97.068,96.155)
OP2: (-14.737,98.833,97.777)
C4: (-9.832,102.237,97.197)
O5': (-13.621,98.326,95.584)
C3': (-11.085,97.540,94.378)
C1': (-10.529,99.783,93.893)
O4': (-11.924,99.610,93.715)
C5': (-13.594,97.947,94.204)
P: (-14.993,98.366,96.388)
O2: (-8.418,101.468,94.121)
C4': (-12.227,98.198,93.631)
C2': (-9.892,98.393,93.968)
O2': (-9.379,98.039,92.699)
N1: (-10.306,100.629,95.076)
N3: (-8.983,102.269,96.170)
N4: (-9.591,103.040,98.234)
C6: (-11.167,100.604,96.138)
C5: (-10.970,101.383,97.207)
O3': (-10.941,96.190,93.967)
OP1: (-15.680,97.068,96.155)
OP2: (-14.737,98.833,97.777)
C4: (-9.832,102.237,97.197)
O5': (-13.621,98.326,95.584)
C3': (-11.085,97.540,94.378)
C1': (-10.529,99.783,93.893)
O4': (-11.924,99.610,93.715)
C5': (-13.594,97.947,94.204)
P: (-14.993,98.366,96.388)
O2: (-8.418,101.468,94.121)
C4': (-12.227,98.198,93.631)
C2': (-9.892,98.393,93.968)
O2': (-9.379,98.039,92.699)
N1: (-10.306,100.629,95.076)
N3: (-8.983,102.269,96.170)
N4: (-9.591,103.040,98.234)
C6: (-11.167,100.604,96.138)
C5: (-10.970,101.383,97.207)
O3': (-10.941,96.190,93.967)
C2: (-3.541,103.031,93.197)
OP1: (-0.314,109.285,96.593)
OP2: (-2.142,107.709,97.446)
C4: (-5.015,103.562,94.914)
O5': (-1.022,107.296,95.258)
C3': (-1.349,106.603,92.393)
C1': (-1.423,104.309,92.902)
O4': (-0.484,104.931,93.771)
C5': (0.122,107.181,94.409)
P: (-0.871,107.916,96.715)
O2: (-3.217,102.345,92.211)
C4': (-0.159,106.250,93.262)
C2': (-1.647,105.268,91.731)
O2': (-0.720,104.957,90.711)
N1: (-2.671,104.047,93.651)
N3: (-4.706,102.823,93.847)
N4: (-6.185,103.332,95.512)
C6: (-2.994,104.783,94.758)
C5: (-4.140,104.576,95.413)
O3': (-1.034,107.615,91.453)
OP1: (-0.314,109.285,96.593)
OP2: (-2.142,107.709,97.446)
C4: (-5.015,103.562,94.914)
O5': (-1.022,107.296,95.258)
C3': (-1.349,106.603,92.393)
C1': (-1.423,104.309,92.902)
O4': (-0.484,104.931,93.771)
C5': (0.122,107.181,94.409)
P: (-0.871,107.916,96.715)
O2: (-3.217,102.345,92.211)
C4': (-0.159,106.250,93.262)
C2': (-1.647,105.268,91.731)
O2': (-0.720,104.957,90.711)
N1: (-2.671,104.047,93.651)
N3: (-4.706,102.823,93.847)
N4: (-6.185,103.332,95.512)
C6: (-2.994,104.783,94.758)
C5: (-4.140,104.576,95.413)
O3': (-1.034,107.615,91.453)
Image (generated by PyMOL):