Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y14:Y59
Extra
PDB:
ATOM 1 O3' C A 13 3.109 16.527 39.998 1.00 36.11 O
ATOM 2 P C A 14 1.737 17.346 40.047 1.00 37.68 P
ATOM 3 OP1 C A 14 1.476 17.729 41.454 1.00 37.42 O
ATOM 4 OP2 C A 14 0.724 16.587 39.284 1.00 38.01 O
ATOM 5 O5' C A 14 2.123 18.657 39.213 1.00 37.80 O
ATOM 6 C5' C A 14 1.148 19.371 38.467 1.00 38.35 C
ATOM 7 C4' C A 14 1.825 20.444 37.636 1.00 38.45 C
ATOM 8 O4' C A 14 2.874 21.063 38.420 1.00 38.73 O
ATOM 9 C3' C A 14 2.551 19.933 36.402 1.00 38.89 C
ATOM 10 O3' C A 14 1.644 19.776 35.320 1.00 39.06 O
ATOM 11 C2' C A 14 3.547 21.060 36.151 1.00 38.72 C
ATOM 12 O2' C A 14 2.956 22.169 35.504 1.00 39.56 O
ATOM 13 C1' C A 14 3.946 21.439 37.575 1.00 38.31 C
ATOM 14 N1 C A 14 5.212 20.777 38.023 1.00 38.04 N
ATOM 15 C2 C A 14 6.366 21.550 38.201 1.00 37.77 C
ATOM 16 O2 C A 14 6.313 22.772 38.005 1.00 38.05 O
ATOM 17 N3 C A 14 7.513 20.941 38.592 1.00 37.21 N
ATOM 18 C4 C A 14 7.534 19.623 38.797 1.00 37.22 C
ATOM 19 N4 C A 14 8.688 19.071 39.183 1.00 37.31 N
ATOM 20 C5 C A 14 6.372 18.815 38.612 1.00 37.55 C
ATOM 21 C6 C A 14 5.246 19.427 38.229 1.00 37.68 C
ATOM 22 P U A 15 1.419 18.335 34.663 1.00 38.58 P
ATOM 23 OP1 U A 15 0.311 18.468 33.691 1.00 39.17 O
ATOM 24 OP2 U A 15 1.331 17.332 35.747 1.00 39.45 O
ATOM 25 O5' U A 15 2.787 18.077 33.874 1.00 38.30 O
TER
ATOM 1 O3' U B 58 4.785 26.032 44.841 1.00 29.01 O
ATOM 2 P A B 59 3.629 26.267 43.763 1.00 28.93 P
ATOM 3 OP1 A B 59 4.246 26.903 42.579 1.00 29.16 O
ATOM 4 OP2 A B 59 2.492 26.925 44.447 1.00 28.86 O
ATOM 5 O5' A B 59 3.180 24.779 43.378 1.00 28.95 O
ATOM 6 C5' A B 59 2.102 24.576 42.469 1.00 28.88 C
ATOM 7 C4' A B 59 1.837 23.096 42.260 1.00 28.70 C
ATOM 8 O4' A B 59 2.749 22.581 41.256 1.00 28.56 O
ATOM 9 C3' A B 59 2.045 22.230 43.495 1.00 28.64 C
ATOM 10 O3' A B 59 0.816 22.104 44.215 1.00 28.94 O
ATOM 11 C2' A B 59 2.499 20.899 42.901 1.00 28.61 C
ATOM 12 O2' A B 59 1.410 20.089 42.502 1.00 28.38 O
ATOM 13 C1' A B 59 3.279 21.335 41.666 1.00 28.10 C
ATOM 14 N9 A B 59 4.726 21.475 41.833 1.00 27.85 N
ATOM 15 C8 A B 59 5.436 22.643 41.862 1.00 27.63 C
ATOM 16 N7 A B 59 6.730 22.477 41.996 1.00 27.58 N
ATOM 17 C5 A B 59 6.886 21.102 42.043 1.00 27.63 C
ATOM 18 C6 A B 59 8.025 20.280 42.176 1.00 27.72 C
ATOM 19 N6 A B 59 9.270 20.757 42.284 1.00 27.46 N
ATOM 20 N1 A B 59 7.835 18.944 42.192 1.00 27.44 N
ATOM 21 C2 A B 59 6.587 18.472 42.083 1.00 27.44 C
ATOM 22 N3 A B 59 5.443 19.143 41.953 1.00 27.33 N
ATOM 23 C4 A B 59 5.662 20.467 41.940 1.00 27.70 C
ATOM 24 P A B 60 0.822 22.096 45.818 1.00 28.88 P
ATOM 25 OP1 A B 60 -0.577 22.067 46.296 1.00 29.05 O
ATOM 26 OP2 A B 60 1.722 23.178 46.270 1.00 28.76 O
ATOM 27 O5' A B 60 1.517 20.694 46.151 1.00 28.47 O
TER
ATOM 2 P C A 14 1.737 17.346 40.047 1.00 37.68 P
ATOM 3 OP1 C A 14 1.476 17.729 41.454 1.00 37.42 O
ATOM 4 OP2 C A 14 0.724 16.587 39.284 1.00 38.01 O
ATOM 5 O5' C A 14 2.123 18.657 39.213 1.00 37.80 O
ATOM 6 C5' C A 14 1.148 19.371 38.467 1.00 38.35 C
ATOM 7 C4' C A 14 1.825 20.444 37.636 1.00 38.45 C
ATOM 8 O4' C A 14 2.874 21.063 38.420 1.00 38.73 O
ATOM 9 C3' C A 14 2.551 19.933 36.402 1.00 38.89 C
ATOM 10 O3' C A 14 1.644 19.776 35.320 1.00 39.06 O
ATOM 11 C2' C A 14 3.547 21.060 36.151 1.00 38.72 C
ATOM 12 O2' C A 14 2.956 22.169 35.504 1.00 39.56 O
ATOM 13 C1' C A 14 3.946 21.439 37.575 1.00 38.31 C
ATOM 14 N1 C A 14 5.212 20.777 38.023 1.00 38.04 N
ATOM 15 C2 C A 14 6.366 21.550 38.201 1.00 37.77 C
ATOM 16 O2 C A 14 6.313 22.772 38.005 1.00 38.05 O
ATOM 17 N3 C A 14 7.513 20.941 38.592 1.00 37.21 N
ATOM 18 C4 C A 14 7.534 19.623 38.797 1.00 37.22 C
ATOM 19 N4 C A 14 8.688 19.071 39.183 1.00 37.31 N
ATOM 20 C5 C A 14 6.372 18.815 38.612 1.00 37.55 C
ATOM 21 C6 C A 14 5.246 19.427 38.229 1.00 37.68 C
ATOM 22 P U A 15 1.419 18.335 34.663 1.00 38.58 P
ATOM 23 OP1 U A 15 0.311 18.468 33.691 1.00 39.17 O
ATOM 24 OP2 U A 15 1.331 17.332 35.747 1.00 39.45 O
ATOM 25 O5' U A 15 2.787 18.077 33.874 1.00 38.30 O
TER
ATOM 1 O3' U B 58 4.785 26.032 44.841 1.00 29.01 O
ATOM 2 P A B 59 3.629 26.267 43.763 1.00 28.93 P
ATOM 3 OP1 A B 59 4.246 26.903 42.579 1.00 29.16 O
ATOM 4 OP2 A B 59 2.492 26.925 44.447 1.00 28.86 O
ATOM 5 O5' A B 59 3.180 24.779 43.378 1.00 28.95 O
ATOM 6 C5' A B 59 2.102 24.576 42.469 1.00 28.88 C
ATOM 7 C4' A B 59 1.837 23.096 42.260 1.00 28.70 C
ATOM 8 O4' A B 59 2.749 22.581 41.256 1.00 28.56 O
ATOM 9 C3' A B 59 2.045 22.230 43.495 1.00 28.64 C
ATOM 10 O3' A B 59 0.816 22.104 44.215 1.00 28.94 O
ATOM 11 C2' A B 59 2.499 20.899 42.901 1.00 28.61 C
ATOM 12 O2' A B 59 1.410 20.089 42.502 1.00 28.38 O
ATOM 13 C1' A B 59 3.279 21.335 41.666 1.00 28.10 C
ATOM 14 N9 A B 59 4.726 21.475 41.833 1.00 27.85 N
ATOM 15 C8 A B 59 5.436 22.643 41.862 1.00 27.63 C
ATOM 16 N7 A B 59 6.730 22.477 41.996 1.00 27.58 N
ATOM 17 C5 A B 59 6.886 21.102 42.043 1.00 27.63 C
ATOM 18 C6 A B 59 8.025 20.280 42.176 1.00 27.72 C
ATOM 19 N6 A B 59 9.270 20.757 42.284 1.00 27.46 N
ATOM 20 N1 A B 59 7.835 18.944 42.192 1.00 27.44 N
ATOM 21 C2 A B 59 6.587 18.472 42.083 1.00 27.44 C
ATOM 22 N3 A B 59 5.443 19.143 41.953 1.00 27.33 N
ATOM 23 C4 A B 59 5.662 20.467 41.940 1.00 27.70 C
ATOM 24 P A B 60 0.822 22.096 45.818 1.00 28.88 P
ATOM 25 OP1 A B 60 -0.577 22.067 46.296 1.00 29.05 O
ATOM 26 OP2 A B 60 1.722 23.178 46.270 1.00 28.76 O
ATOM 27 O5' A B 60 1.517 20.694 46.151 1.00 28.47 O
TER
Atoms:
C2: (6.366,21.550,38.201)
OP1: (1.476,17.729,41.454)
OP2: (0.724,16.587,39.284)
C4: (7.534,19.623,38.797)
O5': (2.123,18.657,39.213)
C3': (2.551,19.933,36.402)
C1': (3.946,21.439,37.575)
O4': (2.874,21.063,38.420)
C5': (1.148,19.371,38.467)
P: (1.737,17.346,40.047)
O2: (6.313,22.772,38.005)
C4': (1.825,20.444,37.636)
C2': (3.547,21.060,36.151)
O2': (2.956,22.169,35.504)
N1: (5.212,20.777,38.023)
N3: (7.513,20.941,38.592)
N4: (8.688,19.071,39.183)
C6: (5.246,19.427,38.229)
C5: (6.372,18.815,38.612)
O3': (1.644,19.776,35.320)
OP1: (1.476,17.729,41.454)
OP2: (0.724,16.587,39.284)
C4: (7.534,19.623,38.797)
O5': (2.123,18.657,39.213)
C3': (2.551,19.933,36.402)
C1': (3.946,21.439,37.575)
O4': (2.874,21.063,38.420)
C5': (1.148,19.371,38.467)
P: (1.737,17.346,40.047)
O2: (6.313,22.772,38.005)
C4': (1.825,20.444,37.636)
C2': (3.547,21.060,36.151)
O2': (2.956,22.169,35.504)
N1: (5.212,20.777,38.023)
N3: (7.513,20.941,38.592)
N4: (8.688,19.071,39.183)
C6: (5.246,19.427,38.229)
C5: (6.372,18.815,38.612)
O3': (1.644,19.776,35.320)
OP1: (4.246,26.903,42.579)
OP2: (2.492,26.925,44.447)
C3': (2.045,22.230,43.495)
C1': (3.279,21.335,41.666)
C5': (2.102,24.576,42.469)
O4': (2.749,22.581,41.256)
C8: (5.436,22.643,41.862)
O2': (1.410,20.089,42.502)
C6: (8.025,20.280,42.176)
C5: (6.886,21.102,42.043)
C4: (5.662,20.467,41.940)
P: (3.629,26.267,43.763)
C4': (1.837,23.096,42.260)
C2': (2.499,20.899,42.901)
C2: (6.587,18.472,42.083)
N1: (7.835,18.944,42.192)
N3: (5.443,19.143,41.953)
N6: (9.270,20.757,42.284)
N7: (6.730,22.477,41.996)
N9: (4.726,21.475,41.833)
O5': (3.180,24.779,43.378)
O3': (0.816,22.104,44.215)
OP2: (2.492,26.925,44.447)
C3': (2.045,22.230,43.495)
C1': (3.279,21.335,41.666)
C5': (2.102,24.576,42.469)
O4': (2.749,22.581,41.256)
C8: (5.436,22.643,41.862)
O2': (1.410,20.089,42.502)
C6: (8.025,20.280,42.176)
C5: (6.886,21.102,42.043)
C4: (5.662,20.467,41.940)
P: (3.629,26.267,43.763)
C4': (1.837,23.096,42.260)
C2': (2.499,20.899,42.901)
C2: (6.587,18.472,42.083)
N1: (7.835,18.944,42.192)
N3: (5.443,19.143,41.953)
N6: (9.270,20.757,42.284)
N7: (6.730,22.477,41.996)
N9: (4.726,21.475,41.833)
O5': (3.180,24.779,43.378)
O3': (0.816,22.104,44.215)
Image (generated by PyMOL):