Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ5:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.473 99.209 122.171 1.00 72.03 O
ATOM 2 P C A 559 -4.818 98.243 123.409 1.00 74.83 P
ATOM 3 OP1 C A 559 -4.041 98.732 124.576 1.00 74.83 O
ATOM 4 OP2 C A 559 -4.661 96.827 122.960 1.00 73.08 O
ATOM 5 O5' C A 559 -6.360 98.521 123.699 1.00 74.76 O
ATOM 6 C5' C A 559 -6.825 99.841 124.051 1.00 76.36 C
ATOM 7 C4' C A 559 -8.326 99.923 123.894 1.00 77.21 C
ATOM 8 O4' C A 559 -8.672 99.671 122.504 1.00 75.97 O
ATOM 9 C3' C A 559 -9.104 98.872 124.672 1.00 78.53 C
ATOM 10 O3' C A 559 -9.319 99.257 126.025 1.00 82.05 O
ATOM 11 C2' C A 559 -10.391 98.758 123.865 1.00 76.78 C
ATOM 12 O2' C A 559 -11.292 99.819 124.118 1.00 76.75 O
ATOM 13 C1' C A 559 -9.851 98.881 122.437 1.00 74.07 C
ATOM 14 N1 C A 559 -9.500 97.579 121.835 1.00 69.28 N
ATOM 15 C2 C A 559 -10.493 96.842 121.174 1.00 68.42 C
ATOM 16 O2 C A 559 -11.644 97.308 121.097 1.00 68.39 O
ATOM 17 N3 C A 559 -10.173 95.644 120.630 1.00 66.72 N
ATOM 18 C4 C A 559 -8.923 95.182 120.718 1.00 65.83 C
ATOM 19 N4 C A 559 -8.648 93.999 120.159 1.00 64.30 N
ATOM 20 C5 C A 559 -7.896 95.913 121.381 1.00 66.22 C
ATOM 21 C6 C A 559 -8.225 97.091 121.919 1.00 67.52 C
ATOM 22 P G A 560 -9.196 98.159 127.195 1.00 86.24 P
ATOM 23 OP1 G A 560 -9.536 98.845 128.467 1.00 85.82 O
ATOM 24 OP2 G A 560 -7.890 97.458 127.063 1.00 85.01 O
ATOM 25 O5' G A 560 -10.361 97.119 126.870 1.00 87.81 O
TER
ATOM 1 O3' C B 573 -11.438 84.709 116.614 1.00 77.67 O
ATOM 2 P C B 574 -11.441 85.586 115.266 1.00 78.36 P
ATOM 3 OP1 C B 574 -12.541 85.096 114.402 1.00 78.60 O
ATOM 4 OP2 C B 574 -10.056 85.584 114.747 1.00 80.49 O
ATOM 5 O5' C B 574 -11.830 87.055 115.745 1.00 75.64 O
ATOM 6 C5' C B 574 -13.160 87.342 116.205 1.00 76.18 C
ATOM 7 C4' C B 574 -13.231 88.726 116.808 1.00 76.90 C
ATOM 8 O4' C B 574 -12.303 88.828 117.918 1.00 77.63 O
ATOM 9 C3' C B 574 -12.845 89.870 115.891 1.00 77.92 C
ATOM 10 O3' C B 574 -13.938 90.250 115.067 1.00 78.34 O
ATOM 11 C2' C B 574 -12.453 90.964 116.878 1.00 78.47 C
ATOM 12 O2' C B 574 -13.565 91.653 117.424 1.00 78.58 O
ATOM 13 C1' C B 574 -11.768 90.144 117.975 1.00 77.79 C
ATOM 14 N1 C B 574 -10.299 90.061 117.839 1.00 77.85 N
ATOM 15 C2 C B 574 -9.502 91.081 118.394 1.00 77.83 C
ATOM 16 O2 C B 574 -10.052 92.040 118.961 1.00 76.40 O
ATOM 17 N3 C B 574 -8.153 90.993 118.291 1.00 78.01 N
ATOM 18 C4 C B 574 -7.597 89.950 117.662 1.00 78.38 C
ATOM 19 N4 C B 574 -6.263 89.900 117.585 1.00 78.69 N
ATOM 20 C5 C B 574 -8.382 88.910 117.082 1.00 77.72 C
ATOM 21 C6 C B 574 -9.713 89.005 117.192 1.00 77.77 C
ATOM 22 P A B 575 -13.663 90.797 113.583 1.00 78.49 P
ATOM 23 OP1 A B 575 -12.966 92.104 113.707 1.00 77.20 O
ATOM 24 OP2 A B 575 -14.947 90.724 112.839 1.00 78.76 O
ATOM 25 O5' A B 575 -12.667 89.722 112.955 1.00 76.18 O
TER
ATOM 2 P C A 559 -4.818 98.243 123.409 1.00 74.83 P
ATOM 3 OP1 C A 559 -4.041 98.732 124.576 1.00 74.83 O
ATOM 4 OP2 C A 559 -4.661 96.827 122.960 1.00 73.08 O
ATOM 5 O5' C A 559 -6.360 98.521 123.699 1.00 74.76 O
ATOM 6 C5' C A 559 -6.825 99.841 124.051 1.00 76.36 C
ATOM 7 C4' C A 559 -8.326 99.923 123.894 1.00 77.21 C
ATOM 8 O4' C A 559 -8.672 99.671 122.504 1.00 75.97 O
ATOM 9 C3' C A 559 -9.104 98.872 124.672 1.00 78.53 C
ATOM 10 O3' C A 559 -9.319 99.257 126.025 1.00 82.05 O
ATOM 11 C2' C A 559 -10.391 98.758 123.865 1.00 76.78 C
ATOM 12 O2' C A 559 -11.292 99.819 124.118 1.00 76.75 O
ATOM 13 C1' C A 559 -9.851 98.881 122.437 1.00 74.07 C
ATOM 14 N1 C A 559 -9.500 97.579 121.835 1.00 69.28 N
ATOM 15 C2 C A 559 -10.493 96.842 121.174 1.00 68.42 C
ATOM 16 O2 C A 559 -11.644 97.308 121.097 1.00 68.39 O
ATOM 17 N3 C A 559 -10.173 95.644 120.630 1.00 66.72 N
ATOM 18 C4 C A 559 -8.923 95.182 120.718 1.00 65.83 C
ATOM 19 N4 C A 559 -8.648 93.999 120.159 1.00 64.30 N
ATOM 20 C5 C A 559 -7.896 95.913 121.381 1.00 66.22 C
ATOM 21 C6 C A 559 -8.225 97.091 121.919 1.00 67.52 C
ATOM 22 P G A 560 -9.196 98.159 127.195 1.00 86.24 P
ATOM 23 OP1 G A 560 -9.536 98.845 128.467 1.00 85.82 O
ATOM 24 OP2 G A 560 -7.890 97.458 127.063 1.00 85.01 O
ATOM 25 O5' G A 560 -10.361 97.119 126.870 1.00 87.81 O
TER
ATOM 1 O3' C B 573 -11.438 84.709 116.614 1.00 77.67 O
ATOM 2 P C B 574 -11.441 85.586 115.266 1.00 78.36 P
ATOM 3 OP1 C B 574 -12.541 85.096 114.402 1.00 78.60 O
ATOM 4 OP2 C B 574 -10.056 85.584 114.747 1.00 80.49 O
ATOM 5 O5' C B 574 -11.830 87.055 115.745 1.00 75.64 O
ATOM 6 C5' C B 574 -13.160 87.342 116.205 1.00 76.18 C
ATOM 7 C4' C B 574 -13.231 88.726 116.808 1.00 76.90 C
ATOM 8 O4' C B 574 -12.303 88.828 117.918 1.00 77.63 O
ATOM 9 C3' C B 574 -12.845 89.870 115.891 1.00 77.92 C
ATOM 10 O3' C B 574 -13.938 90.250 115.067 1.00 78.34 O
ATOM 11 C2' C B 574 -12.453 90.964 116.878 1.00 78.47 C
ATOM 12 O2' C B 574 -13.565 91.653 117.424 1.00 78.58 O
ATOM 13 C1' C B 574 -11.768 90.144 117.975 1.00 77.79 C
ATOM 14 N1 C B 574 -10.299 90.061 117.839 1.00 77.85 N
ATOM 15 C2 C B 574 -9.502 91.081 118.394 1.00 77.83 C
ATOM 16 O2 C B 574 -10.052 92.040 118.961 1.00 76.40 O
ATOM 17 N3 C B 574 -8.153 90.993 118.291 1.00 78.01 N
ATOM 18 C4 C B 574 -7.597 89.950 117.662 1.00 78.38 C
ATOM 19 N4 C B 574 -6.263 89.900 117.585 1.00 78.69 N
ATOM 20 C5 C B 574 -8.382 88.910 117.082 1.00 77.72 C
ATOM 21 C6 C B 574 -9.713 89.005 117.192 1.00 77.77 C
ATOM 22 P A B 575 -13.663 90.797 113.583 1.00 78.49 P
ATOM 23 OP1 A B 575 -12.966 92.104 113.707 1.00 77.20 O
ATOM 24 OP2 A B 575 -14.947 90.724 112.839 1.00 78.76 O
ATOM 25 O5' A B 575 -12.667 89.722 112.955 1.00 76.18 O
TER
Atoms:
C2: (-10.493,96.842,121.174)
OP1: (-4.041,98.732,124.576)
OP2: (-4.661,96.827,122.960)
C4: (-8.923,95.182,120.718)
O5': (-6.360,98.521,123.699)
C3': (-9.104,98.872,124.672)
C1': (-9.851,98.881,122.437)
O4': (-8.672,99.671,122.504)
C5': (-6.825,99.841,124.051)
P: (-4.818,98.243,123.409)
O2: (-11.644,97.308,121.097)
C4': (-8.326,99.923,123.894)
C2': (-10.391,98.758,123.865)
O2': (-11.292,99.819,124.118)
N1: (-9.500,97.579,121.835)
N3: (-10.173,95.644,120.630)
N4: (-8.648,93.999,120.159)
C6: (-8.225,97.091,121.919)
C5: (-7.896,95.913,121.381)
O3': (-9.319,99.257,126.025)
OP1: (-4.041,98.732,124.576)
OP2: (-4.661,96.827,122.960)
C4: (-8.923,95.182,120.718)
O5': (-6.360,98.521,123.699)
C3': (-9.104,98.872,124.672)
C1': (-9.851,98.881,122.437)
O4': (-8.672,99.671,122.504)
C5': (-6.825,99.841,124.051)
P: (-4.818,98.243,123.409)
O2: (-11.644,97.308,121.097)
C4': (-8.326,99.923,123.894)
C2': (-10.391,98.758,123.865)
O2': (-11.292,99.819,124.118)
N1: (-9.500,97.579,121.835)
N3: (-10.173,95.644,120.630)
N4: (-8.648,93.999,120.159)
C6: (-8.225,97.091,121.919)
C5: (-7.896,95.913,121.381)
O3': (-9.319,99.257,126.025)
C2: (-9.502,91.081,118.394)
OP1: (-12.541,85.096,114.402)
OP2: (-10.056,85.584,114.747)
C4: (-7.597,89.950,117.662)
O5': (-11.830,87.055,115.745)
C3': (-12.845,89.870,115.891)
C1': (-11.768,90.144,117.975)
O4': (-12.303,88.828,117.918)
C5': (-13.160,87.342,116.205)
P: (-11.441,85.586,115.266)
O2: (-10.052,92.040,118.961)
C4': (-13.231,88.726,116.808)
C2': (-12.453,90.964,116.878)
O2': (-13.565,91.653,117.424)
N1: (-10.299,90.061,117.839)
N3: (-8.153,90.993,118.291)
N4: (-6.263,89.900,117.585)
C6: (-9.713,89.005,117.192)
C5: (-8.382,88.910,117.082)
O3': (-13.938,90.250,115.067)
OP1: (-12.541,85.096,114.402)
OP2: (-10.056,85.584,114.747)
C4: (-7.597,89.950,117.662)
O5': (-11.830,87.055,115.745)
C3': (-12.845,89.870,115.891)
C1': (-11.768,90.144,117.975)
O4': (-12.303,88.828,117.918)
C5': (-13.160,87.342,116.205)
P: (-11.441,85.586,115.266)
O2: (-10.052,92.040,118.961)
C4': (-13.231,88.726,116.808)
C2': (-12.453,90.964,116.878)
O2': (-13.565,91.653,117.424)
N1: (-10.299,90.061,117.839)
N3: (-8.153,90.993,118.291)
N4: (-6.263,89.900,117.585)
C6: (-9.713,89.005,117.192)
C5: (-8.382,88.910,117.082)
O3': (-13.938,90.250,115.067)
Image (generated by PyMOL):