Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A20:A21
Extra
PDB:
ATOM 1 O3' U A 19 -12.046 14.493 16.565 1.00 26.75 O
ATOM 2 P U A 20 -13.141 15.610 16.190 1.00 33.64 P
ATOM 3 OP1 U A 20 -14.035 15.024 15.161 1.00 29.36 O
ATOM 4 OP2 U A 20 -12.398 16.852 15.863 1.00 42.90 O
ATOM 5 O5' U A 20 -13.938 15.799 17.555 1.00 37.06 O
ATOM 6 C5' U A 20 -13.445 16.661 18.576 1.00 37.73 C
ATOM 7 C4' U A 20 -14.207 16.491 19.868 1.00 38.26 C
ATOM 8 O4' U A 20 -15.594 16.883 19.664 1.00 37.59 O
ATOM 9 C3' U A 20 -14.247 15.066 20.421 1.00 38.15 C
ATOM 10 O3' U A 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 11 C2' U A 20 -15.595 14.559 19.925 1.00 35.41 C
ATOM 12 O2' U A 20 -16.131 13.493 20.678 1.00 30.95 O
ATOM 13 C1' U A 20 -16.441 15.820 20.047 1.00 39.71 C
ATOM 14 N1 U A 20 -17.637 15.837 19.183 1.00 42.77 N
ATOM 15 C2 U A 20 -18.842 16.056 19.822 1.00 45.87 C
ATOM 16 O2 U A 20 -18.925 16.233 21.028 1.00 45.59 O
ATOM 17 N3 U A 20 -19.940 16.064 19.000 1.00 45.72 N
ATOM 18 C4 U A 20 -19.950 15.879 17.633 1.00 48.64 C
ATOM 19 O4 U A 20 -21.026 15.917 17.033 1.00 55.50 O
ATOM 20 C5 U A 20 -18.663 15.654 17.047 1.00 41.91 C
ATOM 21 C6 U A 20 -17.572 15.640 17.823 1.00 40.93 C
ATOM 22 P A A 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 23 OP1 A A 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 24 OP2 A A 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 25 O5' A A 21 -12.428 13.434 22.080 1.00 45.12 O
TER
ATOM 1 O3' U B 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 2 P A B 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 3 OP1 A B 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 4 OP2 A B 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 5 O5' A B 21 -12.428 13.434 22.080 1.00 45.12 O
ATOM 6 C5' A B 21 -13.274 12.288 22.083 1.00 38.16 C
ATOM 7 C4' A B 21 -12.480 11.004 22.118 1.00 32.73 C
ATOM 8 O4' A B 21 -11.736 10.859 20.873 1.00 30.90 O
ATOM 9 C3' A B 21 -11.448 10.898 23.244 1.00 31.97 C
ATOM 10 O3' A B 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 11 C2' A B 21 -10.150 11.266 22.529 1.00 31.77 C
ATOM 12 O2' A B 21 -8.977 10.788 23.151 1.00 34.75 O
ATOM 13 C1' A B 21 -10.380 10.611 21.175 1.00 30.07 C
ATOM 14 N9 A B 21 -9.541 11.135 20.093 1.00 32.57 N
ATOM 15 C8 A B 21 -8.828 12.308 20.030 1.00 31.56 C
ATOM 16 N7 A B 21 -8.150 12.454 18.914 1.00 31.30 N
ATOM 17 C5 A B 21 -8.422 11.294 18.198 1.00 30.65 C
ATOM 18 C6 A B 21 -8.010 10.826 16.933 1.00 27.64 C
ATOM 19 N6 A B 21 -7.195 11.492 16.113 1.00 30.60 N
ATOM 20 N1 A B 21 -8.472 9.627 16.522 1.00 24.46 N
ATOM 21 C2 A B 21 -9.288 8.946 17.332 1.00 26.49 C
ATOM 22 N3 A B 21 -9.744 9.275 18.538 1.00 29.11 N
ATOM 23 C4 A B 21 -9.269 10.472 18.919 1.00 30.53 C
ATOM 24 P A B 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 25 OP1 A B 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 26 OP2 A B 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 27 O5' A B 22 -11.448 7.683 25.347 1.00 33.18 O
TER
ATOM 2 P U A 20 -13.141 15.610 16.190 1.00 33.64 P
ATOM 3 OP1 U A 20 -14.035 15.024 15.161 1.00 29.36 O
ATOM 4 OP2 U A 20 -12.398 16.852 15.863 1.00 42.90 O
ATOM 5 O5' U A 20 -13.938 15.799 17.555 1.00 37.06 O
ATOM 6 C5' U A 20 -13.445 16.661 18.576 1.00 37.73 C
ATOM 7 C4' U A 20 -14.207 16.491 19.868 1.00 38.26 C
ATOM 8 O4' U A 20 -15.594 16.883 19.664 1.00 37.59 O
ATOM 9 C3' U A 20 -14.247 15.066 20.421 1.00 38.15 C
ATOM 10 O3' U A 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 11 C2' U A 20 -15.595 14.559 19.925 1.00 35.41 C
ATOM 12 O2' U A 20 -16.131 13.493 20.678 1.00 30.95 O
ATOM 13 C1' U A 20 -16.441 15.820 20.047 1.00 39.71 C
ATOM 14 N1 U A 20 -17.637 15.837 19.183 1.00 42.77 N
ATOM 15 C2 U A 20 -18.842 16.056 19.822 1.00 45.87 C
ATOM 16 O2 U A 20 -18.925 16.233 21.028 1.00 45.59 O
ATOM 17 N3 U A 20 -19.940 16.064 19.000 1.00 45.72 N
ATOM 18 C4 U A 20 -19.950 15.879 17.633 1.00 48.64 C
ATOM 19 O4 U A 20 -21.026 15.917 17.033 1.00 55.50 O
ATOM 20 C5 U A 20 -18.663 15.654 17.047 1.00 41.91 C
ATOM 21 C6 U A 20 -17.572 15.640 17.823 1.00 40.93 C
ATOM 22 P A A 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 23 OP1 A A 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 24 OP2 A A 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 25 O5' A A 21 -12.428 13.434 22.080 1.00 45.12 O
TER
ATOM 1 O3' U B 20 -14.265 15.115 21.846 1.00 40.06 O
ATOM 2 P A B 21 -12.930 14.819 22.687 1.00 50.78 P
ATOM 3 OP1 A B 21 -13.340 14.632 24.102 1.00 42.42 O
ATOM 4 OP2 A B 21 -11.959 15.895 22.363 1.00 39.84 O
ATOM 5 O5' A B 21 -12.428 13.434 22.080 1.00 45.12 O
ATOM 6 C5' A B 21 -13.274 12.288 22.083 1.00 38.16 C
ATOM 7 C4' A B 21 -12.480 11.004 22.118 1.00 32.73 C
ATOM 8 O4' A B 21 -11.736 10.859 20.873 1.00 30.90 O
ATOM 9 C3' A B 21 -11.448 10.898 23.244 1.00 31.97 C
ATOM 10 O3' A B 21 -11.376 9.541 23.678 1.00 35.89 O
ATOM 11 C2' A B 21 -10.150 11.266 22.529 1.00 31.77 C
ATOM 12 O2' A B 21 -8.977 10.788 23.151 1.00 34.75 O
ATOM 13 C1' A B 21 -10.380 10.611 21.175 1.00 30.07 C
ATOM 14 N9 A B 21 -9.541 11.135 20.093 1.00 32.57 N
ATOM 15 C8 A B 21 -8.828 12.308 20.030 1.00 31.56 C
ATOM 16 N7 A B 21 -8.150 12.454 18.914 1.00 31.30 N
ATOM 17 C5 A B 21 -8.422 11.294 18.198 1.00 30.65 C
ATOM 18 C6 A B 21 -8.010 10.826 16.933 1.00 27.64 C
ATOM 19 N6 A B 21 -7.195 11.492 16.113 1.00 30.60 N
ATOM 20 N1 A B 21 -8.472 9.627 16.522 1.00 24.46 N
ATOM 21 C2 A B 21 -9.288 8.946 17.332 1.00 26.49 C
ATOM 22 N3 A B 21 -9.744 9.275 18.538 1.00 29.11 N
ATOM 23 C4 A B 21 -9.269 10.472 18.919 1.00 30.53 C
ATOM 24 P A B 22 -10.937 9.184 25.182 1.00 40.07 P
ATOM 25 OP1 A B 22 -11.699 10.080 26.084 1.00 27.32 O
ATOM 26 OP2 A B 22 -9.453 9.218 25.226 1.00 34.26 O
ATOM 27 O5' A B 22 -11.448 7.683 25.347 1.00 33.18 O
TER
Atoms:
C4: (-19.950,15.879,17.633)
N3: (-19.940,16.064,19.000)
OP1: (-14.035,15.024,15.161)
OP2: (-12.398,16.852,15.863)
C2: (-18.842,16.056,19.822)
C1': (-16.441,15.820,20.047)
C3': (-14.247,15.066,20.421)
O5': (-13.938,15.799,17.555)
O4': (-15.594,16.883,19.664)
C5': (-13.445,16.661,18.576)
P: (-13.141,15.610,16.190)
C4': (-14.207,16.491,19.868)
C2': (-15.595,14.559,19.925)
O2': (-16.131,13.493,20.678)
N1: (-17.637,15.837,19.183)
O4: (-21.026,15.917,17.033)
O2: (-18.925,16.233,21.028)
C6: (-17.572,15.640,17.823)
C5: (-18.663,15.654,17.047)
O3': (-14.265,15.115,21.846)
N3: (-19.940,16.064,19.000)
OP1: (-14.035,15.024,15.161)
OP2: (-12.398,16.852,15.863)
C2: (-18.842,16.056,19.822)
C1': (-16.441,15.820,20.047)
C3': (-14.247,15.066,20.421)
O5': (-13.938,15.799,17.555)
O4': (-15.594,16.883,19.664)
C5': (-13.445,16.661,18.576)
P: (-13.141,15.610,16.190)
C4': (-14.207,16.491,19.868)
C2': (-15.595,14.559,19.925)
O2': (-16.131,13.493,20.678)
N1: (-17.637,15.837,19.183)
O4: (-21.026,15.917,17.033)
O2: (-18.925,16.233,21.028)
C6: (-17.572,15.640,17.823)
C5: (-18.663,15.654,17.047)
O3': (-14.265,15.115,21.846)
OP1: (-13.340,14.632,24.102)
OP2: (-11.959,15.895,22.363)
C3': (-11.448,10.898,23.244)
C1': (-10.380,10.611,21.175)
C5': (-13.274,12.288,22.083)
O4': (-11.736,10.859,20.873)
C8: (-8.828,12.308,20.030)
O2': (-8.977,10.788,23.151)
C6: (-8.010,10.826,16.933)
C5: (-8.422,11.294,18.198)
C4: (-9.269,10.472,18.919)
P: (-12.930,14.819,22.687)
C4': (-12.480,11.004,22.118)
C2': (-10.150,11.266,22.529)
C2: (-9.288,8.946,17.332)
N1: (-8.472,9.627,16.522)
N3: (-9.744,9.275,18.538)
N6: (-7.195,11.492,16.113)
N7: (-8.150,12.454,18.914)
N9: (-9.541,11.135,20.093)
O5': (-12.428,13.434,22.080)
O3': (-11.376,9.541,23.678)
OP2: (-11.959,15.895,22.363)
C3': (-11.448,10.898,23.244)
C1': (-10.380,10.611,21.175)
C5': (-13.274,12.288,22.083)
O4': (-11.736,10.859,20.873)
C8: (-8.828,12.308,20.030)
O2': (-8.977,10.788,23.151)
C6: (-8.010,10.826,16.933)
C5: (-8.422,11.294,18.198)
C4: (-9.269,10.472,18.919)
P: (-12.930,14.819,22.687)
C4': (-12.480,11.004,22.118)
C2': (-10.150,11.266,22.529)
C2: (-9.288,8.946,17.332)
N1: (-8.472,9.627,16.522)
N3: (-9.744,9.275,18.538)
N6: (-7.195,11.492,16.113)
N7: (-8.150,12.454,18.914)
N9: (-9.541,11.135,20.093)
O5': (-12.428,13.434,22.080)
O3': (-11.376,9.541,23.678)
Image (generated by PyMOL):