Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11986:11987
Extra
PDB:
ATOM 1 O3' A A1985 -8.841 -5.405 118.069 1.00 45.42 O
ATOM 2 P C A1986 -9.922 -4.231 117.914 1.00 48.97 P
ATOM 3 OP1 C A1986 -10.833 -4.335 119.086 1.00 49.50 O
ATOM 4 OP2 C A1986 -10.496 -4.352 116.526 1.00 48.68 O
ATOM 5 O5' C A1986 -9.057 -2.902 118.025 1.00 48.92 O
ATOM 6 C5' C A1986 -8.917 -2.049 116.919 1.00 48.63 C
ATOM 7 C4' C A1986 -8.573 -0.650 117.332 1.00 48.80 C
ATOM 8 O4' C A1986 -9.776 0.048 117.697 1.00 49.21 O
ATOM 9 C3' C A1986 -7.610 -0.499 118.518 1.00 48.97 C
ATOM 10 O3' C A1986 -6.769 0.624 118.287 1.00 48.85 O
ATOM 11 C2' C A1986 -8.552 -0.168 119.669 1.00 49.54 C
ATOM 12 O2' C A1986 -7.943 0.552 120.721 1.00 49.81 O
ATOM 13 C1' C A1986 -9.595 0.669 118.948 1.00 49.60 C
ATOM 14 N1 C A1986 -10.907 0.735 119.584 1.00 50.07 N
ATOM 15 C2 C A1986 -11.444 1.974 120.031 1.00 50.45 C
ATOM 16 O2 C A1986 -10.753 3.039 120.026 1.00 50.42 O
ATOM 17 N3 C A1986 -12.717 1.944 120.504 1.00 50.86 N
ATOM 18 C4 C A1986 -13.368 0.775 120.491 1.00 50.88 C
ATOM 19 N4 C A1986 -14.576 0.725 120.960 1.00 51.29 N
ATOM 20 C5 C A1986 -12.867 -0.448 120.016 1.00 50.51 C
ATOM 21 C6 C A1986 -11.627 -0.419 119.548 1.00 50.10 C
ATOM 22 P G A1987 -5.425 0.470 117.426 1.00 47.35 P
ATOM 23 OP1 G A1987 -4.614 1.712 117.660 1.00 47.39 O
ATOM 24 OP2 G A1987 -5.813 0.121 116.035 1.00 46.99 O
ATOM 25 O5' G A1987 -4.716 -0.757 118.130 1.00 47.32 O
TER
ATOM 1 O3' C B1986 -6.769 0.624 118.287 1.00 48.85 O
ATOM 2 P G B1987 -5.425 0.470 117.426 1.00 47.35 P
ATOM 3 OP1 G B1987 -4.614 1.712 117.660 1.00 47.39 O
ATOM 4 OP2 G B1987 -5.813 0.121 116.035 1.00 46.99 O
ATOM 5 O5' G B1987 -4.716 -0.757 118.130 1.00 47.32 O
ATOM 6 C5' G B1987 -3.950 -0.552 119.307 1.00 47.56 C
ATOM 7 C4' G B1987 -2.929 -1.633 119.504 1.00 47.36 C
ATOM 8 O4' G B1987 -3.603 -2.907 119.595 1.00 47.41 O
ATOM 9 C3' G B1987 -1.928 -1.834 118.386 1.00 46.83 C
ATOM 10 O3' G B1987 -0.841 -0.902 118.400 1.00 46.73 O
ATOM 11 C2' G B1987 -1.507 -3.290 118.598 1.00 46.72 C
ATOM 12 O2' G B1987 -0.607 -3.425 119.699 1.00 46.91 O
ATOM 13 C1' G B1987 -2.816 -3.917 119.015 1.00 47.03 C
ATOM 14 N9 G B1987 -3.547 -4.505 117.893 1.00 46.77 N
ATOM 15 C8 G B1987 -4.533 -3.951 117.166 1.00 46.77 C
ATOM 16 N7 G B1987 -5.029 -4.762 116.271 1.00 46.55 N
ATOM 17 C5 G B1987 -4.330 -5.933 116.423 1.00 46.40 C
ATOM 18 C6 G B1987 -4.425 -7.184 115.734 1.00 46.16 C
ATOM 19 O6 G B1987 -5.151 -7.549 114.801 1.00 46.01 O
ATOM 20 N1 G B1987 -3.522 -8.098 116.233 1.00 46.11 N
ATOM 21 C2 G B1987 -2.668 -7.849 117.260 1.00 46.27 C
ATOM 22 N2 G B1987 -1.916 -8.888 117.578 1.00 46.20 N
ATOM 23 N3 G B1987 -2.554 -6.704 117.909 1.00 46.49 N
ATOM 24 C4 G B1987 -3.413 -5.779 117.436 1.00 46.54 C
ATOM 25 P C B1988 -0.143 -0.430 117.000 1.00 44.58 P
ATOM 26 OP1 C B1988 0.668 0.759 117.297 1.00 44.65 O
ATOM 27 OP2 C B1988 -1.223 -0.311 115.977 1.00 44.47 O
ATOM 28 O5' C B1988 0.802 -1.661 116.650 1.00 44.23 O
TER
ATOM 2 P C A1986 -9.922 -4.231 117.914 1.00 48.97 P
ATOM 3 OP1 C A1986 -10.833 -4.335 119.086 1.00 49.50 O
ATOM 4 OP2 C A1986 -10.496 -4.352 116.526 1.00 48.68 O
ATOM 5 O5' C A1986 -9.057 -2.902 118.025 1.00 48.92 O
ATOM 6 C5' C A1986 -8.917 -2.049 116.919 1.00 48.63 C
ATOM 7 C4' C A1986 -8.573 -0.650 117.332 1.00 48.80 C
ATOM 8 O4' C A1986 -9.776 0.048 117.697 1.00 49.21 O
ATOM 9 C3' C A1986 -7.610 -0.499 118.518 1.00 48.97 C
ATOM 10 O3' C A1986 -6.769 0.624 118.287 1.00 48.85 O
ATOM 11 C2' C A1986 -8.552 -0.168 119.669 1.00 49.54 C
ATOM 12 O2' C A1986 -7.943 0.552 120.721 1.00 49.81 O
ATOM 13 C1' C A1986 -9.595 0.669 118.948 1.00 49.60 C
ATOM 14 N1 C A1986 -10.907 0.735 119.584 1.00 50.07 N
ATOM 15 C2 C A1986 -11.444 1.974 120.031 1.00 50.45 C
ATOM 16 O2 C A1986 -10.753 3.039 120.026 1.00 50.42 O
ATOM 17 N3 C A1986 -12.717 1.944 120.504 1.00 50.86 N
ATOM 18 C4 C A1986 -13.368 0.775 120.491 1.00 50.88 C
ATOM 19 N4 C A1986 -14.576 0.725 120.960 1.00 51.29 N
ATOM 20 C5 C A1986 -12.867 -0.448 120.016 1.00 50.51 C
ATOM 21 C6 C A1986 -11.627 -0.419 119.548 1.00 50.10 C
ATOM 22 P G A1987 -5.425 0.470 117.426 1.00 47.35 P
ATOM 23 OP1 G A1987 -4.614 1.712 117.660 1.00 47.39 O
ATOM 24 OP2 G A1987 -5.813 0.121 116.035 1.00 46.99 O
ATOM 25 O5' G A1987 -4.716 -0.757 118.130 1.00 47.32 O
TER
ATOM 1 O3' C B1986 -6.769 0.624 118.287 1.00 48.85 O
ATOM 2 P G B1987 -5.425 0.470 117.426 1.00 47.35 P
ATOM 3 OP1 G B1987 -4.614 1.712 117.660 1.00 47.39 O
ATOM 4 OP2 G B1987 -5.813 0.121 116.035 1.00 46.99 O
ATOM 5 O5' G B1987 -4.716 -0.757 118.130 1.00 47.32 O
ATOM 6 C5' G B1987 -3.950 -0.552 119.307 1.00 47.56 C
ATOM 7 C4' G B1987 -2.929 -1.633 119.504 1.00 47.36 C
ATOM 8 O4' G B1987 -3.603 -2.907 119.595 1.00 47.41 O
ATOM 9 C3' G B1987 -1.928 -1.834 118.386 1.00 46.83 C
ATOM 10 O3' G B1987 -0.841 -0.902 118.400 1.00 46.73 O
ATOM 11 C2' G B1987 -1.507 -3.290 118.598 1.00 46.72 C
ATOM 12 O2' G B1987 -0.607 -3.425 119.699 1.00 46.91 O
ATOM 13 C1' G B1987 -2.816 -3.917 119.015 1.00 47.03 C
ATOM 14 N9 G B1987 -3.547 -4.505 117.893 1.00 46.77 N
ATOM 15 C8 G B1987 -4.533 -3.951 117.166 1.00 46.77 C
ATOM 16 N7 G B1987 -5.029 -4.762 116.271 1.00 46.55 N
ATOM 17 C5 G B1987 -4.330 -5.933 116.423 1.00 46.40 C
ATOM 18 C6 G B1987 -4.425 -7.184 115.734 1.00 46.16 C
ATOM 19 O6 G B1987 -5.151 -7.549 114.801 1.00 46.01 O
ATOM 20 N1 G B1987 -3.522 -8.098 116.233 1.00 46.11 N
ATOM 21 C2 G B1987 -2.668 -7.849 117.260 1.00 46.27 C
ATOM 22 N2 G B1987 -1.916 -8.888 117.578 1.00 46.20 N
ATOM 23 N3 G B1987 -2.554 -6.704 117.909 1.00 46.49 N
ATOM 24 C4 G B1987 -3.413 -5.779 117.436 1.00 46.54 C
ATOM 25 P C B1988 -0.143 -0.430 117.000 1.00 44.58 P
ATOM 26 OP1 C B1988 0.668 0.759 117.297 1.00 44.65 O
ATOM 27 OP2 C B1988 -1.223 -0.311 115.977 1.00 44.47 O
ATOM 28 O5' C B1988 0.802 -1.661 116.650 1.00 44.23 O
TER
Atoms:
C2: (-11.444,1.974,120.031)
OP1: (-10.833,-4.335,119.086)
OP2: (-10.496,-4.352,116.526)
C4: (-13.368,0.775,120.491)
O5': (-9.057,-2.902,118.025)
C3': (-7.610,-0.499,118.518)
C1': (-9.595,0.669,118.948)
O4': (-9.776,0.048,117.697)
C5': (-8.917,-2.049,116.919)
P: (-9.922,-4.231,117.914)
O2: (-10.753,3.039,120.026)
C4': (-8.573,-0.650,117.332)
C2': (-8.552,-0.168,119.669)
O2': (-7.943,0.552,120.721)
N1: (-10.907,0.735,119.584)
N3: (-12.717,1.944,120.504)
N4: (-14.576,0.725,120.960)
C6: (-11.627,-0.419,119.548)
C5: (-12.867,-0.448,120.016)
O3': (-6.769,0.624,118.287)
OP1: (-10.833,-4.335,119.086)
OP2: (-10.496,-4.352,116.526)
C4: (-13.368,0.775,120.491)
O5': (-9.057,-2.902,118.025)
C3': (-7.610,-0.499,118.518)
C1': (-9.595,0.669,118.948)
O4': (-9.776,0.048,117.697)
C5': (-8.917,-2.049,116.919)
P: (-9.922,-4.231,117.914)
O2: (-10.753,3.039,120.026)
C4': (-8.573,-0.650,117.332)
C2': (-8.552,-0.168,119.669)
O2': (-7.943,0.552,120.721)
N1: (-10.907,0.735,119.584)
N3: (-12.717,1.944,120.504)
N4: (-14.576,0.725,120.960)
C6: (-11.627,-0.419,119.548)
C5: (-12.867,-0.448,120.016)
O3': (-6.769,0.624,118.287)
OP1: (-4.614,1.712,117.660)
OP2: (-5.813,0.121,116.035)
C3': (-1.928,-1.834,118.386)
C1': (-2.816,-3.917,119.015)
C5': (-3.950,-0.552,119.307)
O6: (-5.151,-7.549,114.801)
O4': (-3.603,-2.907,119.595)
C8: (-4.533,-3.951,117.166)
C2: (-2.668,-7.849,117.260)
C6: (-4.425,-7.184,115.734)
C5: (-4.330,-5.933,116.423)
C4: (-3.413,-5.779,117.436)
P: (-5.425,0.470,117.426)
C4': (-2.929,-1.633,119.504)
C2': (-1.507,-3.290,118.598)
O2': (-0.607,-3.425,119.699)
N1: (-3.522,-8.098,116.233)
N2: (-1.916,-8.888,117.578)
N3: (-2.554,-6.704,117.909)
N7: (-5.029,-4.762,116.271)
N9: (-3.547,-4.505,117.893)
O5': (-4.716,-0.757,118.130)
O3': (-0.841,-0.902,118.400)
OP2: (-5.813,0.121,116.035)
C3': (-1.928,-1.834,118.386)
C1': (-2.816,-3.917,119.015)
C5': (-3.950,-0.552,119.307)
O6: (-5.151,-7.549,114.801)
O4': (-3.603,-2.907,119.595)
C8: (-4.533,-3.951,117.166)
C2: (-2.668,-7.849,117.260)
C6: (-4.425,-7.184,115.734)
C5: (-4.330,-5.933,116.423)
C4: (-3.413,-5.779,117.436)
P: (-5.425,0.470,117.426)
C4': (-2.929,-1.633,119.504)
C2': (-1.507,-3.290,118.598)
O2': (-0.607,-3.425,119.699)
N1: (-3.522,-8.098,116.233)
N2: (-1.916,-8.888,117.578)
N3: (-2.554,-6.704,117.909)
N7: (-5.029,-4.762,116.271)
N9: (-3.547,-4.505,117.893)
O5': (-4.716,-0.757,118.130)
O3': (-0.841,-0.902,118.400)
Image (generated by PyMOL):