Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:01234:01240
Extra
PDB:
ATOM 1 O3' A A1233 4.982 79.800 68.082 1.00 54.32 O
ATOM 2 P C A1234 5.392 79.921 66.532 1.00 55.77 P
ATOM 3 OP1 C A1234 4.887 78.719 65.829 1.00 55.37 O
ATOM 4 OP2 C A1234 6.840 80.251 66.464 1.00 56.46 O
ATOM 5 O5' C A1234 4.568 81.187 66.030 1.00 54.17 O
ATOM 6 C5' C A1234 3.138 81.179 66.054 1.00 54.24 C
ATOM 7 C4' C A1234 2.592 82.537 65.689 1.00 56.26 C
ATOM 8 O4' C A1234 2.849 83.491 66.752 1.00 57.67 O
ATOM 9 C3' C A1234 3.198 83.200 64.469 1.00 56.91 C
ATOM 10 O3' C A1234 2.699 82.665 63.261 1.00 59.18 O
ATOM 11 C2' C A1234 2.804 84.652 64.682 1.00 57.69 C
ATOM 12 O2' C A1234 1.454 84.913 64.361 1.00 58.38 O
ATOM 13 C1' C A1234 3.009 84.788 66.193 1.00 57.74 C
ATOM 14 N1 C A1234 4.368 85.276 66.499 1.00 58.67 N
ATOM 15 C2 C A1234 4.591 86.664 66.559 1.00 59.19 C
ATOM 16 O2 C A1234 3.626 87.440 66.428 1.00 59.76 O
ATOM 17 N3 C A1234 5.848 87.120 66.764 1.00 57.66 N
ATOM 18 C4 C A1234 6.852 86.258 66.924 1.00 57.82 C
ATOM 19 N4 C A1234 8.073 86.754 67.106 1.00 59.24 N
ATOM 20 C5 C A1234 6.649 84.847 66.902 1.00 58.28 C
ATOM 21 C6 C A1234 5.406 84.404 66.692 1.00 58.32 C
ATOM 22 P U A1235 3.700 82.445 62.030 1.00 62.62 P
ATOM 23 OP1 U A1235 2.931 81.899 60.886 1.00 62.28 O
ATOM 24 OP2 U A1235 4.877 81.702 62.540 1.00 61.57 O
ATOM 25 O5' U A1235 4.157 83.927 61.671 1.00 62.96 O
TER
ATOM 1 O3' A B1239 8.034 98.444 66.292 1.00 93.88 O
ATOM 2 P C B1240 7.402 98.227 67.756 1.00 94.01 P
ATOM 3 OP1 C B1240 7.459 99.530 68.470 1.00 94.11 O
ATOM 4 OP2 C B1240 8.000 97.016 68.385 1.00 93.40 O
ATOM 5 O5' C B1240 5.869 97.917 67.481 1.00 90.98 O
ATOM 6 C5' C B1240 5.064 97.350 68.512 1.00 86.69 C
ATOM 7 C4' C B1240 3.736 96.919 67.961 1.00 83.58 C
ATOM 8 O4' C B1240 3.920 96.013 66.844 1.00 81.87 O
ATOM 9 C3' C B1240 2.935 96.115 68.958 1.00 82.60 C
ATOM 10 O3' C B1240 2.270 96.967 69.862 1.00 81.36 O
ATOM 11 C2' C B1240 2.002 95.310 68.070 1.00 82.10 C
ATOM 12 O2' C B1240 0.880 96.054 67.634 1.00 82.27 O
ATOM 13 C1' C B1240 2.927 94.996 66.888 1.00 81.04 C
ATOM 14 N1 C B1240 3.604 93.688 66.989 1.00 78.46 N
ATOM 15 C2 C B1240 2.834 92.516 66.930 1.00 77.92 C
ATOM 16 O2 C B1240 1.597 92.608 66.841 1.00 78.45 O
ATOM 17 N3 C B1240 3.457 91.315 66.978 1.00 76.92 N
ATOM 18 C4 C B1240 4.786 91.256 67.092 1.00 76.45 C
ATOM 19 N4 C B1240 5.358 90.052 67.125 1.00 76.12 N
ATOM 20 C5 C B1240 5.588 92.429 67.177 1.00 76.64 C
ATOM 21 C6 C B1240 4.964 93.611 67.123 1.00 77.39 C
ATOM 22 P U B1241 2.317 96.633 71.421 1.00 82.25 P
ATOM 23 OP1 U B1241 1.463 97.633 72.105 1.00 83.73 O
ATOM 24 OP2 U B1241 3.740 96.478 71.826 1.00 81.21 O
ATOM 25 O5' U B1241 1.601 95.214 71.505 1.00 80.35 O
TER
ATOM 2 P C A1234 5.392 79.921 66.532 1.00 55.77 P
ATOM 3 OP1 C A1234 4.887 78.719 65.829 1.00 55.37 O
ATOM 4 OP2 C A1234 6.840 80.251 66.464 1.00 56.46 O
ATOM 5 O5' C A1234 4.568 81.187 66.030 1.00 54.17 O
ATOM 6 C5' C A1234 3.138 81.179 66.054 1.00 54.24 C
ATOM 7 C4' C A1234 2.592 82.537 65.689 1.00 56.26 C
ATOM 8 O4' C A1234 2.849 83.491 66.752 1.00 57.67 O
ATOM 9 C3' C A1234 3.198 83.200 64.469 1.00 56.91 C
ATOM 10 O3' C A1234 2.699 82.665 63.261 1.00 59.18 O
ATOM 11 C2' C A1234 2.804 84.652 64.682 1.00 57.69 C
ATOM 12 O2' C A1234 1.454 84.913 64.361 1.00 58.38 O
ATOM 13 C1' C A1234 3.009 84.788 66.193 1.00 57.74 C
ATOM 14 N1 C A1234 4.368 85.276 66.499 1.00 58.67 N
ATOM 15 C2 C A1234 4.591 86.664 66.559 1.00 59.19 C
ATOM 16 O2 C A1234 3.626 87.440 66.428 1.00 59.76 O
ATOM 17 N3 C A1234 5.848 87.120 66.764 1.00 57.66 N
ATOM 18 C4 C A1234 6.852 86.258 66.924 1.00 57.82 C
ATOM 19 N4 C A1234 8.073 86.754 67.106 1.00 59.24 N
ATOM 20 C5 C A1234 6.649 84.847 66.902 1.00 58.28 C
ATOM 21 C6 C A1234 5.406 84.404 66.692 1.00 58.32 C
ATOM 22 P U A1235 3.700 82.445 62.030 1.00 62.62 P
ATOM 23 OP1 U A1235 2.931 81.899 60.886 1.00 62.28 O
ATOM 24 OP2 U A1235 4.877 81.702 62.540 1.00 61.57 O
ATOM 25 O5' U A1235 4.157 83.927 61.671 1.00 62.96 O
TER
ATOM 1 O3' A B1239 8.034 98.444 66.292 1.00 93.88 O
ATOM 2 P C B1240 7.402 98.227 67.756 1.00 94.01 P
ATOM 3 OP1 C B1240 7.459 99.530 68.470 1.00 94.11 O
ATOM 4 OP2 C B1240 8.000 97.016 68.385 1.00 93.40 O
ATOM 5 O5' C B1240 5.869 97.917 67.481 1.00 90.98 O
ATOM 6 C5' C B1240 5.064 97.350 68.512 1.00 86.69 C
ATOM 7 C4' C B1240 3.736 96.919 67.961 1.00 83.58 C
ATOM 8 O4' C B1240 3.920 96.013 66.844 1.00 81.87 O
ATOM 9 C3' C B1240 2.935 96.115 68.958 1.00 82.60 C
ATOM 10 O3' C B1240 2.270 96.967 69.862 1.00 81.36 O
ATOM 11 C2' C B1240 2.002 95.310 68.070 1.00 82.10 C
ATOM 12 O2' C B1240 0.880 96.054 67.634 1.00 82.27 O
ATOM 13 C1' C B1240 2.927 94.996 66.888 1.00 81.04 C
ATOM 14 N1 C B1240 3.604 93.688 66.989 1.00 78.46 N
ATOM 15 C2 C B1240 2.834 92.516 66.930 1.00 77.92 C
ATOM 16 O2 C B1240 1.597 92.608 66.841 1.00 78.45 O
ATOM 17 N3 C B1240 3.457 91.315 66.978 1.00 76.92 N
ATOM 18 C4 C B1240 4.786 91.256 67.092 1.00 76.45 C
ATOM 19 N4 C B1240 5.358 90.052 67.125 1.00 76.12 N
ATOM 20 C5 C B1240 5.588 92.429 67.177 1.00 76.64 C
ATOM 21 C6 C B1240 4.964 93.611 67.123 1.00 77.39 C
ATOM 22 P U B1241 2.317 96.633 71.421 1.00 82.25 P
ATOM 23 OP1 U B1241 1.463 97.633 72.105 1.00 83.73 O
ATOM 24 OP2 U B1241 3.740 96.478 71.826 1.00 81.21 O
ATOM 25 O5' U B1241 1.601 95.214 71.505 1.00 80.35 O
TER
Atoms:
C2: (4.591,86.664,66.559)
OP1: (4.887,78.719,65.829)
OP2: (6.840,80.251,66.464)
C4: (6.852,86.258,66.924)
O5': (4.568,81.187,66.030)
C3': (3.198,83.200,64.469)
C1': (3.009,84.788,66.193)
O4': (2.849,83.491,66.752)
C5': (3.138,81.179,66.054)
P: (5.392,79.921,66.532)
O2: (3.626,87.440,66.428)
C4': (2.592,82.537,65.689)
C2': (2.804,84.652,64.682)
O2': (1.454,84.913,64.361)
N1: (4.368,85.276,66.499)
N3: (5.848,87.120,66.764)
N4: (8.073,86.754,67.106)
C6: (5.406,84.404,66.692)
C5: (6.649,84.847,66.902)
O3': (2.699,82.665,63.261)
OP1: (4.887,78.719,65.829)
OP2: (6.840,80.251,66.464)
C4: (6.852,86.258,66.924)
O5': (4.568,81.187,66.030)
C3': (3.198,83.200,64.469)
C1': (3.009,84.788,66.193)
O4': (2.849,83.491,66.752)
C5': (3.138,81.179,66.054)
P: (5.392,79.921,66.532)
O2: (3.626,87.440,66.428)
C4': (2.592,82.537,65.689)
C2': (2.804,84.652,64.682)
O2': (1.454,84.913,64.361)
N1: (4.368,85.276,66.499)
N3: (5.848,87.120,66.764)
N4: (8.073,86.754,67.106)
C6: (5.406,84.404,66.692)
C5: (6.649,84.847,66.902)
O3': (2.699,82.665,63.261)
C2: (2.834,92.516,66.930)
OP1: (7.459,99.530,68.470)
OP2: (8.000,97.016,68.385)
C4: (4.786,91.256,67.092)
O5': (5.869,97.917,67.481)
C3': (2.935,96.115,68.958)
C1': (2.927,94.996,66.888)
O4': (3.920,96.013,66.844)
C5': (5.064,97.350,68.512)
P: (7.402,98.227,67.756)
O2: (1.597,92.608,66.841)
C4': (3.736,96.919,67.961)
C2': (2.002,95.310,68.070)
O2': (0.880,96.054,67.634)
N1: (3.604,93.688,66.989)
N3: (3.457,91.315,66.978)
N4: (5.358,90.052,67.125)
C6: (4.964,93.611,67.123)
C5: (5.588,92.429,67.177)
O3': (2.270,96.967,69.862)
OP1: (7.459,99.530,68.470)
OP2: (8.000,97.016,68.385)
C4: (4.786,91.256,67.092)
O5': (5.869,97.917,67.481)
C3': (2.935,96.115,68.958)
C1': (2.927,94.996,66.888)
O4': (3.920,96.013,66.844)
C5': (5.064,97.350,68.512)
P: (7.402,98.227,67.756)
O2: (1.597,92.608,66.841)
C4': (3.736,96.919,67.961)
C2': (2.002,95.310,68.070)
O2': (0.880,96.054,67.634)
N1: (3.604,93.688,66.989)
N3: (3.457,91.315,66.978)
N4: (5.358,90.052,67.125)
C6: (4.964,93.611,67.123)
C5: (5.588,92.429,67.177)
O3': (2.270,96.967,69.862)
Image (generated by PyMOL):