Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12120:12000
Extra
PDB:
ATOM 1 O3' A A2119 -11.728 -5.325 89.074 1.00 50.35 O
ATOM 2 P A A2120 -11.761 -6.154 90.432 1.00 43.93 P
ATOM 3 OP1 A A2120 -11.012 -7.403 90.189 1.00 43.68 O
ATOM 4 OP2 A A2120 -13.196 -6.219 90.863 1.00 44.32 O
ATOM 5 O5' A A2120 -10.928 -5.243 91.425 1.00 43.91 O
ATOM 6 C5' A A2120 -10.001 -5.819 92.335 1.00 43.79 C
ATOM 7 C4' A A2120 -9.019 -4.795 92.797 1.00 43.69 C
ATOM 8 O4' A A2120 -9.711 -3.543 92.990 1.00 43.94 O
ATOM 9 C3' A A2120 -8.281 -5.127 94.095 1.00 43.69 C
ATOM 10 O3' A A2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 11 C2' A A2120 -8.787 -4.089 95.097 1.00 44.01 C
ATOM 12 O2' A A2120 -7.785 -3.608 95.986 1.00 43.96 O
ATOM 13 C1' A A2120 -9.320 -2.963 94.206 1.00 44.06 C
ATOM 14 N9 A A2120 -10.473 -2.278 94.784 1.00 44.44 N
ATOM 15 C8 A A2120 -11.783 -2.618 94.709 1.00 44.70 C
ATOM 16 N7 A A2120 -12.612 -1.844 95.361 1.00 45.05 N
ATOM 17 C5 A A2120 -11.757 -0.940 95.931 1.00 45.01 C
ATOM 18 C6 A A2120 -12.014 0.137 96.750 1.00 45.28 C
ATOM 19 N6 A A2120 -13.213 0.453 97.135 1.00 45.65 N
ATOM 20 N1 A A2120 -10.976 0.877 97.149 1.00 45.18 N
ATOM 21 C2 A A2120 -9.724 0.530 96.772 1.00 44.81 C
ATOM 22 N3 A A2120 -9.347 -0.460 95.982 1.00 44.51 N
ATOM 23 C4 A A2120 -10.437 -1.174 95.595 1.00 44.64 C
ATOM 24 P U A2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 25 OP1 U A2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 26 OP2 U A2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 27 O5' U A2121 -6.394 -5.859 91.701 1.00 57.01 O
TER
ATOM 1 O3' C B1999 -22.566 -2.419 92.029 1.00 60.89 O
ATOM 2 P U B2000 -22.100 -3.840 92.644 1.00 52.06 P
ATOM 3 OP1 U B2000 -23.206 -4.778 92.462 1.00 52.29 O
ATOM 4 OP2 U B2000 -21.579 -3.617 94.015 1.00 52.11 O
ATOM 5 O5' U B2000 -20.937 -4.227 91.676 1.00 51.59 O
ATOM 6 C5' U B2000 -20.317 -5.466 91.752 1.00 51.37 C
ATOM 7 C4' U B2000 -18.897 -5.321 91.423 1.00 50.96 C
ATOM 8 O4' U B2000 -18.473 -3.982 91.759 1.00 50.96 O
ATOM 9 C3' U B2000 -17.985 -6.215 92.200 1.00 50.77 C
ATOM 10 O3' U B2000 -17.888 -7.469 91.608 1.00 50.62 O
ATOM 11 C2' U B2000 -16.663 -5.463 92.206 1.00 50.47 C
ATOM 12 O2' U B2000 -15.886 -5.772 91.030 1.00 50.12 O
ATOM 13 C1' U B2000 -17.120 -4.001 92.136 1.00 50.66 C
ATOM 14 N1 U B2000 -16.953 -3.296 93.412 1.00 50.83 N
ATOM 15 C2 U B2000 -15.640 -3.082 93.755 1.00 50.56 C
ATOM 16 O2 U B2000 -14.733 -3.478 93.053 1.00 50.22 O
ATOM 17 N3 U B2000 -15.364 -2.411 94.916 1.00 50.70 N
ATOM 18 C4 U B2000 -16.313 -1.932 95.740 1.00 51.09 C
ATOM 19 O4 U B2000 -15.940 -1.357 96.737 1.00 51.20 O
ATOM 20 C5 U B2000 -17.656 -2.184 95.324 1.00 51.35 C
ATOM 21 C6 U B2000 -17.950 -2.833 94.198 1.00 51.22 C
ATOM 22 P G B2001 -18.357 -8.724 92.408 1.00 54.38 P
ATOM 23 OP1 G B2001 -19.123 -8.199 93.568 1.00 54.75 O
ATOM 24 OP2 G B2001 -17.171 -9.577 92.657 1.00 54.09 O
ATOM 25 O5' G B2001 -19.315 -9.446 91.359 1.00 54.49 O
TER
ATOM 2 P A A2120 -11.761 -6.154 90.432 1.00 43.93 P
ATOM 3 OP1 A A2120 -11.012 -7.403 90.189 1.00 43.68 O
ATOM 4 OP2 A A2120 -13.196 -6.219 90.863 1.00 44.32 O
ATOM 5 O5' A A2120 -10.928 -5.243 91.425 1.00 43.91 O
ATOM 6 C5' A A2120 -10.001 -5.819 92.335 1.00 43.79 C
ATOM 7 C4' A A2120 -9.019 -4.795 92.797 1.00 43.69 C
ATOM 8 O4' A A2120 -9.711 -3.543 92.990 1.00 43.94 O
ATOM 9 C3' A A2120 -8.281 -5.127 94.095 1.00 43.69 C
ATOM 10 O3' A A2120 -6.871 -4.966 93.921 1.00 43.38 O
ATOM 11 C2' A A2120 -8.787 -4.089 95.097 1.00 44.01 C
ATOM 12 O2' A A2120 -7.785 -3.608 95.986 1.00 43.96 O
ATOM 13 C1' A A2120 -9.320 -2.963 94.206 1.00 44.06 C
ATOM 14 N9 A A2120 -10.473 -2.278 94.784 1.00 44.44 N
ATOM 15 C8 A A2120 -11.783 -2.618 94.709 1.00 44.70 C
ATOM 16 N7 A A2120 -12.612 -1.844 95.361 1.00 45.05 N
ATOM 17 C5 A A2120 -11.757 -0.940 95.931 1.00 45.01 C
ATOM 18 C6 A A2120 -12.014 0.137 96.750 1.00 45.28 C
ATOM 19 N6 A A2120 -13.213 0.453 97.135 1.00 45.65 N
ATOM 20 N1 A A2120 -10.976 0.877 97.149 1.00 45.18 N
ATOM 21 C2 A A2120 -9.724 0.530 96.772 1.00 44.81 C
ATOM 22 N3 A A2120 -9.347 -0.460 95.982 1.00 44.51 N
ATOM 23 C4 A A2120 -10.437 -1.174 95.595 1.00 44.64 C
ATOM 24 P U A2121 -6.023 -6.074 93.185 1.00 57.13 P
ATOM 25 OP1 U A2121 -6.507 -7.351 93.624 1.00 57.24 O
ATOM 26 OP2 U A2121 -4.638 -5.752 93.367 1.00 56.89 O
ATOM 27 O5' U A2121 -6.394 -5.859 91.701 1.00 57.01 O
TER
ATOM 1 O3' C B1999 -22.566 -2.419 92.029 1.00 60.89 O
ATOM 2 P U B2000 -22.100 -3.840 92.644 1.00 52.06 P
ATOM 3 OP1 U B2000 -23.206 -4.778 92.462 1.00 52.29 O
ATOM 4 OP2 U B2000 -21.579 -3.617 94.015 1.00 52.11 O
ATOM 5 O5' U B2000 -20.937 -4.227 91.676 1.00 51.59 O
ATOM 6 C5' U B2000 -20.317 -5.466 91.752 1.00 51.37 C
ATOM 7 C4' U B2000 -18.897 -5.321 91.423 1.00 50.96 C
ATOM 8 O4' U B2000 -18.473 -3.982 91.759 1.00 50.96 O
ATOM 9 C3' U B2000 -17.985 -6.215 92.200 1.00 50.77 C
ATOM 10 O3' U B2000 -17.888 -7.469 91.608 1.00 50.62 O
ATOM 11 C2' U B2000 -16.663 -5.463 92.206 1.00 50.47 C
ATOM 12 O2' U B2000 -15.886 -5.772 91.030 1.00 50.12 O
ATOM 13 C1' U B2000 -17.120 -4.001 92.136 1.00 50.66 C
ATOM 14 N1 U B2000 -16.953 -3.296 93.412 1.00 50.83 N
ATOM 15 C2 U B2000 -15.640 -3.082 93.755 1.00 50.56 C
ATOM 16 O2 U B2000 -14.733 -3.478 93.053 1.00 50.22 O
ATOM 17 N3 U B2000 -15.364 -2.411 94.916 1.00 50.70 N
ATOM 18 C4 U B2000 -16.313 -1.932 95.740 1.00 51.09 C
ATOM 19 O4 U B2000 -15.940 -1.357 96.737 1.00 51.20 O
ATOM 20 C5 U B2000 -17.656 -2.184 95.324 1.00 51.35 C
ATOM 21 C6 U B2000 -17.950 -2.833 94.198 1.00 51.22 C
ATOM 22 P G B2001 -18.357 -8.724 92.408 1.00 54.38 P
ATOM 23 OP1 G B2001 -19.123 -8.199 93.568 1.00 54.75 O
ATOM 24 OP2 G B2001 -17.171 -9.577 92.657 1.00 54.09 O
ATOM 25 O5' G B2001 -19.315 -9.446 91.359 1.00 54.49 O
TER
Atoms:
OP1: (-11.012,-7.403,90.189)
OP2: (-13.196,-6.219,90.863)
C3': (-8.281,-5.127,94.095)
C1': (-9.320,-2.963,94.206)
C5': (-10.001,-5.819,92.335)
O4': (-9.711,-3.543,92.990)
C8: (-11.783,-2.618,94.709)
O2': (-7.785,-3.608,95.986)
C6: (-12.014,0.137,96.750)
C5: (-11.757,-0.940,95.931)
C4: (-10.437,-1.174,95.595)
P: (-11.761,-6.154,90.432)
C4': (-9.019,-4.795,92.797)
C2': (-8.787,-4.089,95.097)
C2: (-9.724,0.530,96.772)
N1: (-10.976,0.877,97.149)
N3: (-9.347,-0.460,95.982)
N6: (-13.213,0.453,97.135)
N7: (-12.612,-1.844,95.361)
N9: (-10.473,-2.278,94.784)
O5': (-10.928,-5.243,91.425)
O3': (-6.871,-4.966,93.921)
OP2: (-13.196,-6.219,90.863)
C3': (-8.281,-5.127,94.095)
C1': (-9.320,-2.963,94.206)
C5': (-10.001,-5.819,92.335)
O4': (-9.711,-3.543,92.990)
C8: (-11.783,-2.618,94.709)
O2': (-7.785,-3.608,95.986)
C6: (-12.014,0.137,96.750)
C5: (-11.757,-0.940,95.931)
C4: (-10.437,-1.174,95.595)
P: (-11.761,-6.154,90.432)
C4': (-9.019,-4.795,92.797)
C2': (-8.787,-4.089,95.097)
C2: (-9.724,0.530,96.772)
N1: (-10.976,0.877,97.149)
N3: (-9.347,-0.460,95.982)
N6: (-13.213,0.453,97.135)
N7: (-12.612,-1.844,95.361)
N9: (-10.473,-2.278,94.784)
O5': (-10.928,-5.243,91.425)
O3': (-6.871,-4.966,93.921)
C4: (-16.313,-1.932,95.740)
N3: (-15.364,-2.411,94.916)
OP1: (-23.206,-4.778,92.462)
OP2: (-21.579,-3.617,94.015)
C2: (-15.640,-3.082,93.755)
C1': (-17.120,-4.001,92.136)
C3': (-17.985,-6.215,92.200)
O5': (-20.937,-4.227,91.676)
O4': (-18.473,-3.982,91.759)
C5': (-20.317,-5.466,91.752)
P: (-22.100,-3.840,92.644)
C4': (-18.897,-5.321,91.423)
C2': (-16.663,-5.463,92.206)
O2': (-15.886,-5.772,91.030)
N1: (-16.953,-3.296,93.412)
O4: (-15.940,-1.357,96.737)
O2: (-14.733,-3.478,93.053)
C6: (-17.950,-2.833,94.198)
C5: (-17.656,-2.184,95.324)
O3': (-17.888,-7.469,91.608)
N3: (-15.364,-2.411,94.916)
OP1: (-23.206,-4.778,92.462)
OP2: (-21.579,-3.617,94.015)
C2: (-15.640,-3.082,93.755)
C1': (-17.120,-4.001,92.136)
C3': (-17.985,-6.215,92.200)
O5': (-20.937,-4.227,91.676)
O4': (-18.473,-3.982,91.759)
C5': (-20.317,-5.466,91.752)
P: (-22.100,-3.840,92.644)
C4': (-18.897,-5.321,91.423)
C2': (-16.663,-5.463,92.206)
O2': (-15.886,-5.772,91.030)
N1: (-16.953,-3.296,93.412)
O4: (-15.940,-1.357,96.737)
O2: (-14.733,-3.478,93.053)
C6: (-17.950,-2.833,94.198)
C5: (-17.656,-2.184,95.324)
O3': (-17.888,-7.469,91.608)
Image (generated by PyMOL):