Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01234:01240
Extra
PDB:
ATOM 1 O3' A A1233 5.042 79.892 68.150 1.00 48.80 O
ATOM 2 P C A1234 5.445 80.036 66.604 1.00 50.98 P
ATOM 3 OP1 C A1234 4.940 78.845 65.884 1.00 51.30 O
ATOM 4 OP2 C A1234 6.893 80.376 66.531 1.00 52.13 O
ATOM 5 O5' C A1234 4.614 81.302 66.116 1.00 49.93 O
ATOM 6 C5' C A1234 3.186 81.270 66.098 1.00 49.63 C
ATOM 7 C4' C A1234 2.628 82.630 65.761 1.00 51.01 C
ATOM 8 O4' C A1234 2.917 83.570 66.828 1.00 52.12 O
ATOM 9 C3' C A1234 3.205 83.311 64.537 1.00 51.11 C
ATOM 10 O3' C A1234 2.675 82.793 63.337 1.00 53.05 O
ATOM 11 C2' C A1234 2.803 84.757 64.776 1.00 51.35 C
ATOM 12 O2' C A1234 1.442 85.001 64.496 1.00 50.25 O
ATOM 13 C1' C A1234 3.045 84.877 66.282 1.00 52.09 C
ATOM 14 N1 C A1234 4.402 85.382 66.559 1.00 53.69 N
ATOM 15 C2 C A1234 4.607 86.771 66.604 1.00 54.81 C
ATOM 16 O2 C A1234 3.630 87.531 66.478 1.00 56.30 O
ATOM 17 N3 C A1234 5.860 87.246 66.788 1.00 53.88 N
ATOM 18 C4 C A1234 6.878 86.400 66.943 1.00 53.08 C
ATOM 19 N4 C A1234 8.094 86.915 67.109 1.00 53.70 N
ATOM 20 C5 C A1234 6.694 84.985 66.933 1.00 53.46 C
ATOM 21 C6 C A1234 5.454 84.524 66.742 1.00 53.21 C
ATOM 22 P U A1235 3.645 82.584 62.079 1.00 57.16 P
ATOM 23 OP1 U A1235 2.822 82.086 60.947 1.00 57.30 O
ATOM 24 OP2 U A1235 4.826 81.799 62.527 1.00 54.66 O
ATOM 25 O5' U A1235 4.128 84.064 61.746 1.00 55.94 O
TER
ATOM 1 O3' A B1239 8.068 98.470 66.294 1.00 88.41 O
ATOM 2 P C B1240 7.436 98.256 67.759 1.00 88.99 P
ATOM 3 OP1 C B1240 7.560 99.542 68.497 1.00 89.16 O
ATOM 4 OP2 C B1240 7.982 97.007 68.359 1.00 88.23 O
ATOM 5 O5' C B1240 5.887 98.021 67.492 1.00 85.68 O
ATOM 6 C5' C B1240 5.063 97.472 68.519 1.00 81.29 C
ATOM 7 C4' C B1240 3.739 97.042 67.958 1.00 78.58 C
ATOM 8 O4' C B1240 3.932 96.127 66.849 1.00 76.94 O
ATOM 9 C3' C B1240 2.923 96.244 68.949 1.00 77.99 C
ATOM 10 O3' C B1240 2.261 97.099 69.854 1.00 77.12 O
ATOM 11 C2' C B1240 1.997 95.440 68.053 1.00 77.45 C
ATOM 12 O2' C B1240 0.887 96.187 67.592 1.00 77.48 O
ATOM 13 C1' C B1240 2.937 95.112 66.888 1.00 76.12 C
ATOM 14 N1 C B1240 3.613 93.804 67.005 1.00 73.88 N
ATOM 15 C2 C B1240 2.843 92.628 66.963 1.00 73.46 C
ATOM 16 O2 C B1240 1.604 92.716 66.880 1.00 74.29 O
ATOM 17 N3 C B1240 3.468 91.428 67.019 1.00 72.32 N
ATOM 18 C4 C B1240 4.799 91.372 67.126 1.00 71.63 C
ATOM 19 N4 C B1240 5.374 90.168 67.160 1.00 70.39 N
ATOM 20 C5 C B1240 5.600 92.547 67.199 1.00 72.20 C
ATOM 21 C6 C B1240 4.973 93.729 67.136 1.00 72.92 C
ATOM 22 P U B1241 2.346 96.786 71.418 1.00 77.89 P
ATOM 23 OP1 U B1241 1.521 97.805 72.113 1.00 79.00 O
ATOM 24 OP2 U B1241 3.777 96.620 71.788 1.00 76.88 O
ATOM 25 O5' U B1241 1.612 95.378 71.536 1.00 75.88 O
TER
ATOM 2 P C A1234 5.445 80.036 66.604 1.00 50.98 P
ATOM 3 OP1 C A1234 4.940 78.845 65.884 1.00 51.30 O
ATOM 4 OP2 C A1234 6.893 80.376 66.531 1.00 52.13 O
ATOM 5 O5' C A1234 4.614 81.302 66.116 1.00 49.93 O
ATOM 6 C5' C A1234 3.186 81.270 66.098 1.00 49.63 C
ATOM 7 C4' C A1234 2.628 82.630 65.761 1.00 51.01 C
ATOM 8 O4' C A1234 2.917 83.570 66.828 1.00 52.12 O
ATOM 9 C3' C A1234 3.205 83.311 64.537 1.00 51.11 C
ATOM 10 O3' C A1234 2.675 82.793 63.337 1.00 53.05 O
ATOM 11 C2' C A1234 2.803 84.757 64.776 1.00 51.35 C
ATOM 12 O2' C A1234 1.442 85.001 64.496 1.00 50.25 O
ATOM 13 C1' C A1234 3.045 84.877 66.282 1.00 52.09 C
ATOM 14 N1 C A1234 4.402 85.382 66.559 1.00 53.69 N
ATOM 15 C2 C A1234 4.607 86.771 66.604 1.00 54.81 C
ATOM 16 O2 C A1234 3.630 87.531 66.478 1.00 56.30 O
ATOM 17 N3 C A1234 5.860 87.246 66.788 1.00 53.88 N
ATOM 18 C4 C A1234 6.878 86.400 66.943 1.00 53.08 C
ATOM 19 N4 C A1234 8.094 86.915 67.109 1.00 53.70 N
ATOM 20 C5 C A1234 6.694 84.985 66.933 1.00 53.46 C
ATOM 21 C6 C A1234 5.454 84.524 66.742 1.00 53.21 C
ATOM 22 P U A1235 3.645 82.584 62.079 1.00 57.16 P
ATOM 23 OP1 U A1235 2.822 82.086 60.947 1.00 57.30 O
ATOM 24 OP2 U A1235 4.826 81.799 62.527 1.00 54.66 O
ATOM 25 O5' U A1235 4.128 84.064 61.746 1.00 55.94 O
TER
ATOM 1 O3' A B1239 8.068 98.470 66.294 1.00 88.41 O
ATOM 2 P C B1240 7.436 98.256 67.759 1.00 88.99 P
ATOM 3 OP1 C B1240 7.560 99.542 68.497 1.00 89.16 O
ATOM 4 OP2 C B1240 7.982 97.007 68.359 1.00 88.23 O
ATOM 5 O5' C B1240 5.887 98.021 67.492 1.00 85.68 O
ATOM 6 C5' C B1240 5.063 97.472 68.519 1.00 81.29 C
ATOM 7 C4' C B1240 3.739 97.042 67.958 1.00 78.58 C
ATOM 8 O4' C B1240 3.932 96.127 66.849 1.00 76.94 O
ATOM 9 C3' C B1240 2.923 96.244 68.949 1.00 77.99 C
ATOM 10 O3' C B1240 2.261 97.099 69.854 1.00 77.12 O
ATOM 11 C2' C B1240 1.997 95.440 68.053 1.00 77.45 C
ATOM 12 O2' C B1240 0.887 96.187 67.592 1.00 77.48 O
ATOM 13 C1' C B1240 2.937 95.112 66.888 1.00 76.12 C
ATOM 14 N1 C B1240 3.613 93.804 67.005 1.00 73.88 N
ATOM 15 C2 C B1240 2.843 92.628 66.963 1.00 73.46 C
ATOM 16 O2 C B1240 1.604 92.716 66.880 1.00 74.29 O
ATOM 17 N3 C B1240 3.468 91.428 67.019 1.00 72.32 N
ATOM 18 C4 C B1240 4.799 91.372 67.126 1.00 71.63 C
ATOM 19 N4 C B1240 5.374 90.168 67.160 1.00 70.39 N
ATOM 20 C5 C B1240 5.600 92.547 67.199 1.00 72.20 C
ATOM 21 C6 C B1240 4.973 93.729 67.136 1.00 72.92 C
ATOM 22 P U B1241 2.346 96.786 71.418 1.00 77.89 P
ATOM 23 OP1 U B1241 1.521 97.805 72.113 1.00 79.00 O
ATOM 24 OP2 U B1241 3.777 96.620 71.788 1.00 76.88 O
ATOM 25 O5' U B1241 1.612 95.378 71.536 1.00 75.88 O
TER
Atoms:
C2: (4.607,86.771,66.604)
OP1: (4.940,78.845,65.884)
OP2: (6.893,80.376,66.531)
C4: (6.878,86.400,66.943)
O5': (4.614,81.302,66.116)
C3': (3.205,83.311,64.537)
C1': (3.045,84.877,66.282)
O4': (2.917,83.570,66.828)
C5': (3.186,81.270,66.098)
P: (5.445,80.036,66.604)
O2: (3.630,87.531,66.478)
C4': (2.628,82.630,65.761)
C2': (2.803,84.757,64.776)
O2': (1.442,85.001,64.496)
N1: (4.402,85.382,66.559)
N3: (5.860,87.246,66.788)
N4: (8.094,86.915,67.109)
C6: (5.454,84.524,66.742)
C5: (6.694,84.985,66.933)
O3': (2.675,82.793,63.337)
OP1: (4.940,78.845,65.884)
OP2: (6.893,80.376,66.531)
C4: (6.878,86.400,66.943)
O5': (4.614,81.302,66.116)
C3': (3.205,83.311,64.537)
C1': (3.045,84.877,66.282)
O4': (2.917,83.570,66.828)
C5': (3.186,81.270,66.098)
P: (5.445,80.036,66.604)
O2: (3.630,87.531,66.478)
C4': (2.628,82.630,65.761)
C2': (2.803,84.757,64.776)
O2': (1.442,85.001,64.496)
N1: (4.402,85.382,66.559)
N3: (5.860,87.246,66.788)
N4: (8.094,86.915,67.109)
C6: (5.454,84.524,66.742)
C5: (6.694,84.985,66.933)
O3': (2.675,82.793,63.337)
C2: (2.843,92.628,66.963)
OP1: (7.560,99.542,68.497)
OP2: (7.982,97.007,68.359)
C4: (4.799,91.372,67.126)
O5': (5.887,98.021,67.492)
C3': (2.923,96.244,68.949)
C1': (2.937,95.112,66.888)
O4': (3.932,96.127,66.849)
C5': (5.063,97.472,68.519)
P: (7.436,98.256,67.759)
O2: (1.604,92.716,66.880)
C4': (3.739,97.042,67.958)
C2': (1.997,95.440,68.053)
O2': (0.887,96.187,67.592)
N1: (3.613,93.804,67.005)
N3: (3.468,91.428,67.019)
N4: (5.374,90.168,67.160)
C6: (4.973,93.729,67.136)
C5: (5.600,92.547,67.199)
O3': (2.261,97.099,69.854)
OP1: (7.560,99.542,68.497)
OP2: (7.982,97.007,68.359)
C4: (4.799,91.372,67.126)
O5': (5.887,98.021,67.492)
C3': (2.923,96.244,68.949)
C1': (2.937,95.112,66.888)
O4': (3.932,96.127,66.849)
C5': (5.063,97.472,68.519)
P: (7.436,98.256,67.759)
O2: (1.604,92.716,66.880)
C4': (3.739,97.042,67.958)
C2': (1.997,95.440,68.053)
O2': (0.887,96.187,67.592)
N1: (3.613,93.804,67.005)
N3: (3.468,91.428,67.019)
N4: (5.374,90.168,67.160)
C6: (4.973,93.729,67.136)
C5: (5.600,92.547,67.199)
O3': (2.261,97.099,69.854)
Image (generated by PyMOL):