Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ8:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.360 98.016 122.061 1.00 61.84 O
ATOM 2 P C A 559 -4.733 97.108 123.337 1.00 63.47 P
ATOM 3 OP1 C A 559 -4.118 97.739 124.538 1.00 63.07 O
ATOM 4 OP2 C A 559 -4.439 95.681 123.020 1.00 60.62 O
ATOM 5 O5' C A 559 -6.310 97.276 123.453 1.00 64.04 O
ATOM 6 C5' C A 559 -6.906 98.574 123.623 1.00 64.13 C
ATOM 7 C4' C A 559 -8.396 98.479 123.432 1.00 65.46 C
ATOM 8 O4' C A 559 -8.676 98.073 122.064 1.00 65.30 O
ATOM 9 C3' C A 559 -9.066 97.409 124.276 1.00 66.79 C
ATOM 10 O3' C A 559 -9.329 97.857 125.602 1.00 67.82 O
ATOM 11 C2' C A 559 -10.325 97.106 123.477 1.00 66.50 C
ATOM 12 O2' C A 559 -11.323 98.090 123.667 1.00 68.43 O
ATOM 13 C1' C A 559 -9.790 97.192 122.045 1.00 64.99 C
ATOM 14 N1 C A 559 -9.353 95.892 121.489 1.00 63.63 N
ATOM 15 C2 C A 559 -10.317 95.042 120.910 1.00 63.51 C
ATOM 16 O2 C A 559 -11.509 95.400 120.893 1.00 64.45 O
ATOM 17 N3 C A 559 -9.924 93.852 120.389 1.00 61.99 N
ATOM 18 C4 C A 559 -8.637 93.493 120.437 1.00 61.22 C
ATOM 19 N4 C A 559 -8.296 92.304 119.917 1.00 59.29 N
ATOM 20 C5 C A 559 -7.641 94.334 121.022 1.00 61.52 C
ATOM 21 C6 C A 559 -8.039 95.512 121.529 1.00 61.93 C
ATOM 22 P G A 560 -9.159 96.832 126.828 1.00 69.86 P
ATOM 23 OP1 G A 560 -9.638 97.537 128.046 1.00 69.12 O
ATOM 24 OP2 G A 560 -7.779 96.280 126.800 1.00 69.17 O
ATOM 25 O5' G A 560 -10.187 95.660 126.474 1.00 70.07 O
TER
ATOM 1 O3' C B 573 -10.571 83.004 116.407 1.00 60.42 O
ATOM 2 P C B 574 -10.497 83.794 115.005 1.00 62.55 P
ATOM 3 OP1 C B 574 -11.421 83.141 114.037 1.00 60.73 O
ATOM 4 OP2 C B 574 -9.055 83.939 114.655 1.00 62.74 O
ATOM 5 O5' C B 574 -11.087 85.235 115.356 1.00 59.98 O
ATOM 6 C5' C B 574 -12.464 85.397 115.725 1.00 58.53 C
ATOM 7 C4' C B 574 -12.699 86.783 116.274 1.00 59.22 C
ATOM 8 O4' C B 574 -11.877 86.985 117.451 1.00 60.18 O
ATOM 9 C3' C B 574 -12.323 87.930 115.354 1.00 60.50 C
ATOM 10 O3' C B 574 -13.378 88.187 114.431 1.00 62.45 O
ATOM 11 C2' C B 574 -12.107 89.076 116.338 1.00 60.56 C
ATOM 12 O2' C B 574 -13.315 89.664 116.779 1.00 61.19 O
ATOM 13 C1' C B 574 -11.456 88.343 117.516 1.00 59.84 C
ATOM 14 N1 C B 574 -9.977 88.380 117.498 1.00 59.33 N
ATOM 15 C2 C B 574 -9.307 89.500 118.044 1.00 59.18 C
ATOM 16 O2 C B 574 -9.974 90.436 118.537 1.00 57.44 O
ATOM 17 N3 C B 574 -7.951 89.533 118.013 1.00 58.74 N
ATOM 18 C4 C B 574 -7.268 88.519 117.467 1.00 59.14 C
ATOM 19 N4 C B 574 -5.930 88.602 117.439 1.00 58.80 N
ATOM 20 C5 C B 574 -7.922 87.375 116.918 1.00 58.44 C
ATOM 21 C6 C B 574 -9.259 87.347 116.955 1.00 58.39 C
ATOM 22 P A B 575 -13.051 88.800 112.978 1.00 62.96 P
ATOM 23 OP1 A B 575 -12.590 90.205 113.164 1.00 62.72 O
ATOM 24 OP2 A B 575 -14.228 88.524 112.114 1.00 63.07 O
ATOM 25 O5' A B 575 -11.853 87.909 112.426 1.00 60.63 O
TER
ATOM 2 P C A 559 -4.733 97.108 123.337 1.00 63.47 P
ATOM 3 OP1 C A 559 -4.118 97.739 124.538 1.00 63.07 O
ATOM 4 OP2 C A 559 -4.439 95.681 123.020 1.00 60.62 O
ATOM 5 O5' C A 559 -6.310 97.276 123.453 1.00 64.04 O
ATOM 6 C5' C A 559 -6.906 98.574 123.623 1.00 64.13 C
ATOM 7 C4' C A 559 -8.396 98.479 123.432 1.00 65.46 C
ATOM 8 O4' C A 559 -8.676 98.073 122.064 1.00 65.30 O
ATOM 9 C3' C A 559 -9.066 97.409 124.276 1.00 66.79 C
ATOM 10 O3' C A 559 -9.329 97.857 125.602 1.00 67.82 O
ATOM 11 C2' C A 559 -10.325 97.106 123.477 1.00 66.50 C
ATOM 12 O2' C A 559 -11.323 98.090 123.667 1.00 68.43 O
ATOM 13 C1' C A 559 -9.790 97.192 122.045 1.00 64.99 C
ATOM 14 N1 C A 559 -9.353 95.892 121.489 1.00 63.63 N
ATOM 15 C2 C A 559 -10.317 95.042 120.910 1.00 63.51 C
ATOM 16 O2 C A 559 -11.509 95.400 120.893 1.00 64.45 O
ATOM 17 N3 C A 559 -9.924 93.852 120.389 1.00 61.99 N
ATOM 18 C4 C A 559 -8.637 93.493 120.437 1.00 61.22 C
ATOM 19 N4 C A 559 -8.296 92.304 119.917 1.00 59.29 N
ATOM 20 C5 C A 559 -7.641 94.334 121.022 1.00 61.52 C
ATOM 21 C6 C A 559 -8.039 95.512 121.529 1.00 61.93 C
ATOM 22 P G A 560 -9.159 96.832 126.828 1.00 69.86 P
ATOM 23 OP1 G A 560 -9.638 97.537 128.046 1.00 69.12 O
ATOM 24 OP2 G A 560 -7.779 96.280 126.800 1.00 69.17 O
ATOM 25 O5' G A 560 -10.187 95.660 126.474 1.00 70.07 O
TER
ATOM 1 O3' C B 573 -10.571 83.004 116.407 1.00 60.42 O
ATOM 2 P C B 574 -10.497 83.794 115.005 1.00 62.55 P
ATOM 3 OP1 C B 574 -11.421 83.141 114.037 1.00 60.73 O
ATOM 4 OP2 C B 574 -9.055 83.939 114.655 1.00 62.74 O
ATOM 5 O5' C B 574 -11.087 85.235 115.356 1.00 59.98 O
ATOM 6 C5' C B 574 -12.464 85.397 115.725 1.00 58.53 C
ATOM 7 C4' C B 574 -12.699 86.783 116.274 1.00 59.22 C
ATOM 8 O4' C B 574 -11.877 86.985 117.451 1.00 60.18 O
ATOM 9 C3' C B 574 -12.323 87.930 115.354 1.00 60.50 C
ATOM 10 O3' C B 574 -13.378 88.187 114.431 1.00 62.45 O
ATOM 11 C2' C B 574 -12.107 89.076 116.338 1.00 60.56 C
ATOM 12 O2' C B 574 -13.315 89.664 116.779 1.00 61.19 O
ATOM 13 C1' C B 574 -11.456 88.343 117.516 1.00 59.84 C
ATOM 14 N1 C B 574 -9.977 88.380 117.498 1.00 59.33 N
ATOM 15 C2 C B 574 -9.307 89.500 118.044 1.00 59.18 C
ATOM 16 O2 C B 574 -9.974 90.436 118.537 1.00 57.44 O
ATOM 17 N3 C B 574 -7.951 89.533 118.013 1.00 58.74 N
ATOM 18 C4 C B 574 -7.268 88.519 117.467 1.00 59.14 C
ATOM 19 N4 C B 574 -5.930 88.602 117.439 1.00 58.80 N
ATOM 20 C5 C B 574 -7.922 87.375 116.918 1.00 58.44 C
ATOM 21 C6 C B 574 -9.259 87.347 116.955 1.00 58.39 C
ATOM 22 P A B 575 -13.051 88.800 112.978 1.00 62.96 P
ATOM 23 OP1 A B 575 -12.590 90.205 113.164 1.00 62.72 O
ATOM 24 OP2 A B 575 -14.228 88.524 112.114 1.00 63.07 O
ATOM 25 O5' A B 575 -11.853 87.909 112.426 1.00 60.63 O
TER
Atoms:
C2: (-10.317,95.042,120.910)
OP1: (-4.118,97.739,124.538)
OP2: (-4.439,95.681,123.020)
C4: (-8.637,93.493,120.437)
O5': (-6.310,97.276,123.453)
C3': (-9.066,97.409,124.276)
C1': (-9.790,97.192,122.045)
O4': (-8.676,98.073,122.064)
C5': (-6.906,98.574,123.623)
P: (-4.733,97.108,123.337)
O2: (-11.509,95.400,120.893)
C4': (-8.396,98.479,123.432)
C2': (-10.325,97.106,123.477)
O2': (-11.323,98.090,123.667)
N1: (-9.353,95.892,121.489)
N3: (-9.924,93.852,120.389)
N4: (-8.296,92.304,119.917)
C6: (-8.039,95.512,121.529)
C5: (-7.641,94.334,121.022)
O3': (-9.329,97.857,125.602)
OP1: (-4.118,97.739,124.538)
OP2: (-4.439,95.681,123.020)
C4: (-8.637,93.493,120.437)
O5': (-6.310,97.276,123.453)
C3': (-9.066,97.409,124.276)
C1': (-9.790,97.192,122.045)
O4': (-8.676,98.073,122.064)
C5': (-6.906,98.574,123.623)
P: (-4.733,97.108,123.337)
O2: (-11.509,95.400,120.893)
C4': (-8.396,98.479,123.432)
C2': (-10.325,97.106,123.477)
O2': (-11.323,98.090,123.667)
N1: (-9.353,95.892,121.489)
N3: (-9.924,93.852,120.389)
N4: (-8.296,92.304,119.917)
C6: (-8.039,95.512,121.529)
C5: (-7.641,94.334,121.022)
O3': (-9.329,97.857,125.602)
C2: (-9.307,89.500,118.044)
OP1: (-11.421,83.141,114.037)
OP2: (-9.055,83.939,114.655)
C4: (-7.268,88.519,117.467)
O5': (-11.087,85.235,115.356)
C3': (-12.323,87.930,115.354)
C1': (-11.456,88.343,117.516)
O4': (-11.877,86.985,117.451)
C5': (-12.464,85.397,115.725)
P: (-10.497,83.794,115.005)
O2: (-9.974,90.436,118.537)
C4': (-12.699,86.783,116.274)
C2': (-12.107,89.076,116.338)
O2': (-13.315,89.664,116.779)
N1: (-9.977,88.380,117.498)
N3: (-7.951,89.533,118.013)
N4: (-5.930,88.602,117.439)
C6: (-9.259,87.347,116.955)
C5: (-7.922,87.375,116.918)
O3': (-13.378,88.187,114.431)
OP1: (-11.421,83.141,114.037)
OP2: (-9.055,83.939,114.655)
C4: (-7.268,88.519,117.467)
O5': (-11.087,85.235,115.356)
C3': (-12.323,87.930,115.354)
C1': (-11.456,88.343,117.516)
O4': (-11.877,86.985,117.451)
C5': (-12.464,85.397,115.725)
P: (-10.497,83.794,115.005)
O2: (-9.974,90.436,118.537)
C4': (-12.699,86.783,116.274)
C2': (-12.107,89.076,116.338)
O2': (-13.315,89.664,116.779)
N1: (-9.977,88.380,117.498)
N3: (-7.951,89.533,118.013)
N4: (-5.930,88.602,117.439)
C6: (-9.259,87.347,116.955)
C5: (-7.922,87.375,116.918)
O3': (-13.378,88.187,114.431)
Image (generated by PyMOL):