Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A551:A582
Extra
PDB:
ATOM 1 O3' A A 550 -15.594 99.576 96.090 1.00 54.30 O
ATOM 2 P C A 551 -14.733 98.470 96.848 1.00 53.13 P
ATOM 3 OP1 C A 551 -15.381 97.157 96.641 1.00 54.73 O
ATOM 4 OP2 C A 551 -14.459 98.954 98.221 1.00 54.07 O
ATOM 5 O5' C A 551 -13.392 98.440 96.015 1.00 53.31 O
ATOM 6 C5' C A 551 -13.383 97.931 94.690 1.00 52.85 C
ATOM 7 C4' C A 551 -12.034 98.151 94.088 1.00 54.44 C
ATOM 8 O4' C A 551 -11.738 99.566 94.097 1.00 54.70 O
ATOM 9 C3' C A 551 -10.895 97.542 94.876 1.00 55.24 C
ATOM 10 O3' C A 551 -10.787 96.160 94.531 1.00 57.29 O
ATOM 11 C2' C A 551 -9.716 98.360 94.373 1.00 55.01 C
ATOM 12 O2' C A 551 -9.347 97.940 93.076 1.00 56.03 O
ATOM 13 C1' C A 551 -10.347 99.750 94.237 1.00 54.99 C
ATOM 14 N1 C A 551 -10.111 100.651 95.374 1.00 56.77 N
ATOM 15 C2 C A 551 -8.977 101.467 95.367 1.00 57.11 C
ATOM 16 O2 C A 551 -8.206 101.422 94.397 1.00 57.51 O
ATOM 17 N3 C A 551 -8.749 102.284 96.419 1.00 57.00 N
ATOM 18 C4 C A 551 -9.607 102.311 97.442 1.00 56.83 C
ATOM 19 N4 C A 551 -9.342 103.128 98.458 1.00 57.21 N
ATOM 20 C5 C A 551 -10.773 101.501 97.468 1.00 56.77 C
ATOM 21 C6 C A 551 -10.983 100.693 96.426 1.00 57.34 C
ATOM 22 P G A 552 -10.401 95.073 95.652 1.00 57.90 P
ATOM 23 OP1 G A 552 -10.199 93.759 94.996 1.00 58.59 O
ATOM 24 OP2 G A 552 -11.319 95.186 96.810 1.00 57.53 O
ATOM 25 O5' G A 552 -8.980 95.550 96.159 1.00 58.38 O
TER
ATOM 1 O3' A B 581 0.548 107.177 97.891 1.00 53.45 O
ATOM 2 P C B 582 -0.520 108.088 97.123 1.00 50.61 P
ATOM 3 OP1 C B 582 0.083 109.424 96.914 1.00 50.28 O
ATOM 4 OP2 C B 582 -1.775 107.976 97.889 1.00 51.29 O
ATOM 5 O5' C B 582 -0.665 107.362 95.710 1.00 49.64 O
ATOM 6 C5' C B 582 0.466 107.254 94.835 1.00 49.95 C
ATOM 7 C4' C B 582 0.152 106.383 93.639 1.00 51.80 C
ATOM 8 O4' C B 582 -0.194 105.047 94.097 1.00 52.62 O
ATOM 9 C3' C B 582 -1.003 106.767 92.724 1.00 50.96 C
ATOM 10 O3' C B 582 -0.683 107.824 91.819 1.00 47.14 O
ATOM 11 C2' C B 582 -1.281 105.434 92.031 1.00 52.67 C
ATOM 12 O2' C B 582 -0.294 105.096 91.073 1.00 53.14 O
ATOM 13 C1' C B 582 -1.123 104.455 93.197 1.00 53.04 C
ATOM 14 N1 C B 582 -2.379 104.173 93.932 1.00 54.95 N
ATOM 15 C2 C B 582 -3.251 103.159 93.462 1.00 56.21 C
ATOM 16 O2 C B 582 -2.944 102.497 92.450 1.00 56.92 O
ATOM 17 N3 C B 582 -4.405 102.928 94.135 1.00 56.17 N
ATOM 18 C4 C B 582 -4.705 103.649 95.222 1.00 55.38 C
ATOM 19 N4 C B 582 -5.874 103.412 95.828 1.00 55.71 N
ATOM 20 C5 C B 582 -3.831 104.653 95.728 1.00 54.08 C
ATOM 21 C6 C B 582 -2.699 104.884 95.059 1.00 54.17 C
ATOM 22 P U B 583 -1.805 108.912 91.452 1.00 46.53 P
ATOM 23 OP1 U B 583 -1.269 109.818 90.399 1.00 47.22 O
ATOM 24 OP2 U B 583 -2.302 109.492 92.713 1.00 45.89 O
ATOM 25 O5' U B 583 -2.972 108.031 90.810 1.00 48.42 O
TER
ATOM 2 P C A 551 -14.733 98.470 96.848 1.00 53.13 P
ATOM 3 OP1 C A 551 -15.381 97.157 96.641 1.00 54.73 O
ATOM 4 OP2 C A 551 -14.459 98.954 98.221 1.00 54.07 O
ATOM 5 O5' C A 551 -13.392 98.440 96.015 1.00 53.31 O
ATOM 6 C5' C A 551 -13.383 97.931 94.690 1.00 52.85 C
ATOM 7 C4' C A 551 -12.034 98.151 94.088 1.00 54.44 C
ATOM 8 O4' C A 551 -11.738 99.566 94.097 1.00 54.70 O
ATOM 9 C3' C A 551 -10.895 97.542 94.876 1.00 55.24 C
ATOM 10 O3' C A 551 -10.787 96.160 94.531 1.00 57.29 O
ATOM 11 C2' C A 551 -9.716 98.360 94.373 1.00 55.01 C
ATOM 12 O2' C A 551 -9.347 97.940 93.076 1.00 56.03 O
ATOM 13 C1' C A 551 -10.347 99.750 94.237 1.00 54.99 C
ATOM 14 N1 C A 551 -10.111 100.651 95.374 1.00 56.77 N
ATOM 15 C2 C A 551 -8.977 101.467 95.367 1.00 57.11 C
ATOM 16 O2 C A 551 -8.206 101.422 94.397 1.00 57.51 O
ATOM 17 N3 C A 551 -8.749 102.284 96.419 1.00 57.00 N
ATOM 18 C4 C A 551 -9.607 102.311 97.442 1.00 56.83 C
ATOM 19 N4 C A 551 -9.342 103.128 98.458 1.00 57.21 N
ATOM 20 C5 C A 551 -10.773 101.501 97.468 1.00 56.77 C
ATOM 21 C6 C A 551 -10.983 100.693 96.426 1.00 57.34 C
ATOM 22 P G A 552 -10.401 95.073 95.652 1.00 57.90 P
ATOM 23 OP1 G A 552 -10.199 93.759 94.996 1.00 58.59 O
ATOM 24 OP2 G A 552 -11.319 95.186 96.810 1.00 57.53 O
ATOM 25 O5' G A 552 -8.980 95.550 96.159 1.00 58.38 O
TER
ATOM 1 O3' A B 581 0.548 107.177 97.891 1.00 53.45 O
ATOM 2 P C B 582 -0.520 108.088 97.123 1.00 50.61 P
ATOM 3 OP1 C B 582 0.083 109.424 96.914 1.00 50.28 O
ATOM 4 OP2 C B 582 -1.775 107.976 97.889 1.00 51.29 O
ATOM 5 O5' C B 582 -0.665 107.362 95.710 1.00 49.64 O
ATOM 6 C5' C B 582 0.466 107.254 94.835 1.00 49.95 C
ATOM 7 C4' C B 582 0.152 106.383 93.639 1.00 51.80 C
ATOM 8 O4' C B 582 -0.194 105.047 94.097 1.00 52.62 O
ATOM 9 C3' C B 582 -1.003 106.767 92.724 1.00 50.96 C
ATOM 10 O3' C B 582 -0.683 107.824 91.819 1.00 47.14 O
ATOM 11 C2' C B 582 -1.281 105.434 92.031 1.00 52.67 C
ATOM 12 O2' C B 582 -0.294 105.096 91.073 1.00 53.14 O
ATOM 13 C1' C B 582 -1.123 104.455 93.197 1.00 53.04 C
ATOM 14 N1 C B 582 -2.379 104.173 93.932 1.00 54.95 N
ATOM 15 C2 C B 582 -3.251 103.159 93.462 1.00 56.21 C
ATOM 16 O2 C B 582 -2.944 102.497 92.450 1.00 56.92 O
ATOM 17 N3 C B 582 -4.405 102.928 94.135 1.00 56.17 N
ATOM 18 C4 C B 582 -4.705 103.649 95.222 1.00 55.38 C
ATOM 19 N4 C B 582 -5.874 103.412 95.828 1.00 55.71 N
ATOM 20 C5 C B 582 -3.831 104.653 95.728 1.00 54.08 C
ATOM 21 C6 C B 582 -2.699 104.884 95.059 1.00 54.17 C
ATOM 22 P U B 583 -1.805 108.912 91.452 1.00 46.53 P
ATOM 23 OP1 U B 583 -1.269 109.818 90.399 1.00 47.22 O
ATOM 24 OP2 U B 583 -2.302 109.492 92.713 1.00 45.89 O
ATOM 25 O5' U B 583 -2.972 108.031 90.810 1.00 48.42 O
TER
Atoms:
C2: (-8.977,101.467,95.367)
OP1: (-15.381,97.157,96.641)
OP2: (-14.459,98.954,98.221)
C4: (-9.607,102.311,97.442)
O5': (-13.392,98.440,96.015)
C3': (-10.895,97.542,94.876)
C1': (-10.347,99.750,94.237)
O4': (-11.738,99.566,94.097)
C5': (-13.383,97.931,94.690)
P: (-14.733,98.470,96.848)
O2: (-8.206,101.422,94.397)
C4': (-12.034,98.151,94.088)
C2': (-9.716,98.360,94.373)
O2': (-9.347,97.940,93.076)
N1: (-10.111,100.651,95.374)
N3: (-8.749,102.284,96.419)
N4: (-9.342,103.128,98.458)
C6: (-10.983,100.693,96.426)
C5: (-10.773,101.501,97.468)
O3': (-10.787,96.160,94.531)
OP1: (-15.381,97.157,96.641)
OP2: (-14.459,98.954,98.221)
C4: (-9.607,102.311,97.442)
O5': (-13.392,98.440,96.015)
C3': (-10.895,97.542,94.876)
C1': (-10.347,99.750,94.237)
O4': (-11.738,99.566,94.097)
C5': (-13.383,97.931,94.690)
P: (-14.733,98.470,96.848)
O2: (-8.206,101.422,94.397)
C4': (-12.034,98.151,94.088)
C2': (-9.716,98.360,94.373)
O2': (-9.347,97.940,93.076)
N1: (-10.111,100.651,95.374)
N3: (-8.749,102.284,96.419)
N4: (-9.342,103.128,98.458)
C6: (-10.983,100.693,96.426)
C5: (-10.773,101.501,97.468)
O3': (-10.787,96.160,94.531)
C2: (-3.251,103.159,93.462)
OP1: (0.083,109.424,96.914)
OP2: (-1.775,107.976,97.889)
C4: (-4.705,103.649,95.222)
O5': (-0.665,107.362,95.710)
C3': (-1.003,106.767,92.724)
C1': (-1.123,104.455,93.197)
O4': (-0.194,105.047,94.097)
C5': (0.466,107.254,94.835)
P: (-0.520,108.088,97.123)
O2: (-2.944,102.497,92.450)
C4': (0.152,106.383,93.639)
C2': (-1.281,105.434,92.031)
O2': (-0.294,105.096,91.073)
N1: (-2.379,104.173,93.932)
N3: (-4.405,102.928,94.135)
N4: (-5.874,103.412,95.828)
C6: (-2.699,104.884,95.059)
C5: (-3.831,104.653,95.728)
O3': (-0.683,107.824,91.819)
OP1: (0.083,109.424,96.914)
OP2: (-1.775,107.976,97.889)
C4: (-4.705,103.649,95.222)
O5': (-0.665,107.362,95.710)
C3': (-1.003,106.767,92.724)
C1': (-1.123,104.455,93.197)
O4': (-0.194,105.047,94.097)
C5': (0.466,107.254,94.835)
P: (-0.520,108.088,97.123)
O2: (-2.944,102.497,92.450)
C4': (0.152,106.383,93.639)
C2': (-1.281,105.434,92.031)
O2': (-0.294,105.096,91.073)
N1: (-2.379,104.173,93.932)
N3: (-4.405,102.928,94.135)
N4: (-5.874,103.412,95.828)
C6: (-2.699,104.884,95.059)
C5: (-3.831,104.653,95.728)
O3': (-0.683,107.824,91.819)
Image (generated by PyMOL):