Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZ9:E4:F4
Extra
PDB:
ATOM 1 O3' A A 3 -0.218 18.707 58.813 1.00 49.81 O
ATOM 2 P C A 4 -1.440 19.274 57.927 1.00 55.43 P
ATOM 3 OP1 C A 4 -2.580 19.533 58.843 1.00 59.29 O
ATOM 4 OP2 C A 4 -1.627 18.384 56.756 1.00 48.27 O
ATOM 5 O5' C A 4 -0.918 20.679 57.383 1.00 51.37 O
ATOM 6 C5' C A 4 -0.555 21.708 58.290 1.00 49.21 C
ATOM 7 C4' C A 4 -0.017 22.907 57.547 1.00 54.86 C
ATOM 8 O4' C A 4 1.251 22.588 56.915 1.00 52.73 O
ATOM 9 C3' C A 4 -0.845 23.430 56.388 1.00 52.23 C
ATOM 10 O3' C A 4 -1.960 24.182 56.840 1.00 54.40 O
ATOM 11 C2' C A 4 0.183 24.298 55.673 1.00 48.65 C
ATOM 12 O2' C A 4 0.447 25.512 56.348 1.00 45.82 O
ATOM 13 C1' C A 4 1.429 23.418 55.777 1.00 49.71 C
ATOM 14 N1 C A 4 1.595 22.574 54.585 1.00 50.61 N
ATOM 15 C2 C A 4 2.157 23.148 53.444 1.00 46.26 C
ATOM 16 O2 C A 4 2.510 24.338 53.486 1.00 49.60 O
ATOM 17 N3 C A 4 2.300 22.400 52.329 1.00 36.64 N
ATOM 18 C4 C A 4 1.906 21.125 52.325 1.00 41.83 C
ATOM 19 N4 C A 4 2.055 20.429 51.193 1.00 39.20 N
ATOM 20 C5 C A 4 1.337 20.508 53.479 1.00 40.84 C
ATOM 21 C6 C A 4 1.202 21.263 54.577 1.00 44.39 C
ATOM 22 P U A 5 -3.353 24.096 56.041 1.00 58.21 P
ATOM 23 OP1 U A 5 -4.354 24.871 56.819 1.00 64.82 O
ATOM 24 OP2 U A 5 -3.629 22.680 55.697 1.00 59.36 O
ATOM 25 O5' U A 5 -3.065 24.862 54.674 1.00 58.16 O
TER
ATOM 1 O3' A B 3 4.115 20.280 40.952 1.00 45.37 O
ATOM 2 P C B 4 5.509 20.075 41.737 1.00 44.43 P
ATOM 3 OP1 C B 4 6.590 20.250 40.743 1.00 50.23 O
ATOM 4 OP2 C B 4 5.434 18.820 42.526 1.00 44.50 O
ATOM 5 O5' C B 4 5.566 21.285 42.772 1.00 46.95 O
ATOM 6 C5' C B 4 5.527 22.631 42.313 1.00 37.04 C
ATOM 7 C4' C B 4 5.197 23.568 43.451 1.00 43.00 C
ATOM 8 O4' C B 4 3.894 23.224 43.977 1.00 40.35 O
ATOM 9 C3' C B 4 6.107 23.504 44.667 1.00 37.87 C
ATOM 10 O3' C B 4 7.271 24.295 44.490 1.00 36.50 O
ATOM 11 C2' C B 4 5.210 24.066 45.759 1.00 40.95 C
ATOM 12 O2' C B 4 5.121 25.478 45.729 1.00 43.03 O
ATOM 13 C1' C B 4 3.864 23.455 45.373 1.00 38.55 C
ATOM 14 N1 C B 4 3.607 22.169 46.038 1.00 41.97 N
ATOM 15 C2 C B 4 3.141 22.179 47.349 1.00 44.58 C
ATOM 16 O2 C B 4 2.980 23.271 47.913 1.00 46.14 O
ATOM 17 N3 C B 4 2.880 21.004 47.970 1.00 40.29 N
ATOM 18 C4 C B 4 3.071 19.851 47.323 1.00 46.85 C
ATOM 19 N4 C B 4 2.788 18.716 47.969 1.00 39.23 N
ATOM 20 C5 C B 4 3.558 19.811 45.985 1.00 44.18 C
ATOM 21 C6 C B 4 3.811 20.984 45.385 1.00 45.49 C
ATOM 22 P U B 5 8.561 24.026 45.414 1.00 40.62 P
ATOM 23 OP1 U B 5 9.653 24.916 44.964 1.00 38.25 O
ATOM 24 OP2 U B 5 8.787 22.551 45.462 1.00 37.44 O
ATOM 25 O5' U B 5 8.080 24.472 46.863 1.00 38.20 O
TER
ATOM 2 P C A 4 -1.440 19.274 57.927 1.00 55.43 P
ATOM 3 OP1 C A 4 -2.580 19.533 58.843 1.00 59.29 O
ATOM 4 OP2 C A 4 -1.627 18.384 56.756 1.00 48.27 O
ATOM 5 O5' C A 4 -0.918 20.679 57.383 1.00 51.37 O
ATOM 6 C5' C A 4 -0.555 21.708 58.290 1.00 49.21 C
ATOM 7 C4' C A 4 -0.017 22.907 57.547 1.00 54.86 C
ATOM 8 O4' C A 4 1.251 22.588 56.915 1.00 52.73 O
ATOM 9 C3' C A 4 -0.845 23.430 56.388 1.00 52.23 C
ATOM 10 O3' C A 4 -1.960 24.182 56.840 1.00 54.40 O
ATOM 11 C2' C A 4 0.183 24.298 55.673 1.00 48.65 C
ATOM 12 O2' C A 4 0.447 25.512 56.348 1.00 45.82 O
ATOM 13 C1' C A 4 1.429 23.418 55.777 1.00 49.71 C
ATOM 14 N1 C A 4 1.595 22.574 54.585 1.00 50.61 N
ATOM 15 C2 C A 4 2.157 23.148 53.444 1.00 46.26 C
ATOM 16 O2 C A 4 2.510 24.338 53.486 1.00 49.60 O
ATOM 17 N3 C A 4 2.300 22.400 52.329 1.00 36.64 N
ATOM 18 C4 C A 4 1.906 21.125 52.325 1.00 41.83 C
ATOM 19 N4 C A 4 2.055 20.429 51.193 1.00 39.20 N
ATOM 20 C5 C A 4 1.337 20.508 53.479 1.00 40.84 C
ATOM 21 C6 C A 4 1.202 21.263 54.577 1.00 44.39 C
ATOM 22 P U A 5 -3.353 24.096 56.041 1.00 58.21 P
ATOM 23 OP1 U A 5 -4.354 24.871 56.819 1.00 64.82 O
ATOM 24 OP2 U A 5 -3.629 22.680 55.697 1.00 59.36 O
ATOM 25 O5' U A 5 -3.065 24.862 54.674 1.00 58.16 O
TER
ATOM 1 O3' A B 3 4.115 20.280 40.952 1.00 45.37 O
ATOM 2 P C B 4 5.509 20.075 41.737 1.00 44.43 P
ATOM 3 OP1 C B 4 6.590 20.250 40.743 1.00 50.23 O
ATOM 4 OP2 C B 4 5.434 18.820 42.526 1.00 44.50 O
ATOM 5 O5' C B 4 5.566 21.285 42.772 1.00 46.95 O
ATOM 6 C5' C B 4 5.527 22.631 42.313 1.00 37.04 C
ATOM 7 C4' C B 4 5.197 23.568 43.451 1.00 43.00 C
ATOM 8 O4' C B 4 3.894 23.224 43.977 1.00 40.35 O
ATOM 9 C3' C B 4 6.107 23.504 44.667 1.00 37.87 C
ATOM 10 O3' C B 4 7.271 24.295 44.490 1.00 36.50 O
ATOM 11 C2' C B 4 5.210 24.066 45.759 1.00 40.95 C
ATOM 12 O2' C B 4 5.121 25.478 45.729 1.00 43.03 O
ATOM 13 C1' C B 4 3.864 23.455 45.373 1.00 38.55 C
ATOM 14 N1 C B 4 3.607 22.169 46.038 1.00 41.97 N
ATOM 15 C2 C B 4 3.141 22.179 47.349 1.00 44.58 C
ATOM 16 O2 C B 4 2.980 23.271 47.913 1.00 46.14 O
ATOM 17 N3 C B 4 2.880 21.004 47.970 1.00 40.29 N
ATOM 18 C4 C B 4 3.071 19.851 47.323 1.00 46.85 C
ATOM 19 N4 C B 4 2.788 18.716 47.969 1.00 39.23 N
ATOM 20 C5 C B 4 3.558 19.811 45.985 1.00 44.18 C
ATOM 21 C6 C B 4 3.811 20.984 45.385 1.00 45.49 C
ATOM 22 P U B 5 8.561 24.026 45.414 1.00 40.62 P
ATOM 23 OP1 U B 5 9.653 24.916 44.964 1.00 38.25 O
ATOM 24 OP2 U B 5 8.787 22.551 45.462 1.00 37.44 O
ATOM 25 O5' U B 5 8.080 24.472 46.863 1.00 38.20 O
TER
Atoms:
C2: (2.157,23.148,53.444)
OP1: (-2.580,19.533,58.843)
OP2: (-1.627,18.384,56.756)
C4: (1.906,21.125,52.325)
O5': (-0.918,20.679,57.383)
C3': (-0.845,23.430,56.388)
C1': (1.429,23.418,55.777)
O4': (1.251,22.588,56.915)
C5': (-0.555,21.708,58.290)
P: (-1.440,19.274,57.927)
O2: (2.510,24.338,53.486)
C4': (-0.017,22.907,57.547)
C2': (0.183,24.298,55.673)
O2': (0.447,25.512,56.348)
N1: (1.595,22.574,54.585)
N3: (2.300,22.400,52.329)
N4: (2.055,20.429,51.193)
C6: (1.202,21.263,54.577)
C5: (1.337,20.508,53.479)
O3': (-1.960,24.182,56.840)
OP1: (-2.580,19.533,58.843)
OP2: (-1.627,18.384,56.756)
C4: (1.906,21.125,52.325)
O5': (-0.918,20.679,57.383)
C3': (-0.845,23.430,56.388)
C1': (1.429,23.418,55.777)
O4': (1.251,22.588,56.915)
C5': (-0.555,21.708,58.290)
P: (-1.440,19.274,57.927)
O2: (2.510,24.338,53.486)
C4': (-0.017,22.907,57.547)
C2': (0.183,24.298,55.673)
O2': (0.447,25.512,56.348)
N1: (1.595,22.574,54.585)
N3: (2.300,22.400,52.329)
N4: (2.055,20.429,51.193)
C6: (1.202,21.263,54.577)
C5: (1.337,20.508,53.479)
O3': (-1.960,24.182,56.840)
C2: (3.141,22.179,47.349)
OP1: (6.590,20.250,40.743)
OP2: (5.434,18.820,42.526)
C4: (3.071,19.851,47.323)
O5': (5.566,21.285,42.772)
C3': (6.107,23.504,44.667)
C1': (3.864,23.455,45.373)
O4': (3.894,23.224,43.977)
C5': (5.527,22.631,42.313)
P: (5.509,20.075,41.737)
O2: (2.980,23.271,47.913)
C4': (5.197,23.568,43.451)
C2': (5.210,24.066,45.759)
O2': (5.121,25.478,45.729)
N1: (3.607,22.169,46.038)
N3: (2.880,21.004,47.970)
N4: (2.788,18.716,47.969)
C6: (3.811,20.984,45.385)
C5: (3.558,19.811,45.985)
O3': (7.271,24.295,44.490)
OP1: (6.590,20.250,40.743)
OP2: (5.434,18.820,42.526)
C4: (3.071,19.851,47.323)
O5': (5.566,21.285,42.772)
C3': (6.107,23.504,44.667)
C1': (3.864,23.455,45.373)
O4': (3.894,23.224,43.977)
C5': (5.527,22.631,42.313)
P: (5.509,20.075,41.737)
O2: (2.980,23.271,47.913)
C4': (5.197,23.568,43.451)
C2': (5.210,24.066,45.759)
O2': (5.121,25.478,45.729)
N1: (3.607,22.169,46.038)
N3: (2.880,21.004,47.970)
N4: (2.788,18.716,47.969)
C6: (3.811,20.984,45.385)
C5: (3.558,19.811,45.985)
O3': (7.271,24.295,44.490)
Image (generated by PyMOL):