Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2X:A20:A18
Extra
PDB:
ATOM 1 O3' C A 19 -11.930 -19.027 2.079 1.00 33.61 O
ATOM 2 P A A 20 -12.294 -20.347 1.225 1.00 35.05 P
ATOM 3 OP1 A A 20 -12.965 -21.333 2.124 1.00 33.01 O
ATOM 4 OP2 A A 20 -11.084 -20.761 0.464 1.00 34.67 O
ATOM 5 O5' A A 20 -13.377 -19.817 0.184 1.00 34.51 O
ATOM 6 C5' A A 20 -14.622 -19.275 0.650 1.00 33.44 C
ATOM 7 C4' A A 20 -15.398 -18.676 -0.491 1.00 33.12 C
ATOM 8 O4' A A 20 -14.717 -17.512 -1.024 1.00 32.30 O
ATOM 9 C3' A A 20 -15.613 -19.560 -1.702 1.00 33.72 C
ATOM 10 O3' A A 20 -16.687 -20.453 -1.486 1.00 35.51 O
ATOM 11 C2' A A 20 -15.932 -18.542 -2.790 1.00 33.10 C
ATOM 12 O2' A A 20 -17.274 -18.106 -2.741 1.00 33.14 O
ATOM 13 C1' A A 20 -15.038 -17.368 -2.396 1.00 31.81 C
ATOM 14 N9 A A 20 -13.804 -17.322 -3.181 1.00 31.49 N
ATOM 15 C8 A A 20 -12.516 -17.590 -2.792 1.00 30.76 C
ATOM 16 N7 A A 20 -11.639 -17.454 -3.753 1.00 29.89 N
ATOM 17 C5 A A 20 -12.398 -17.069 -4.847 1.00 29.93 C
ATOM 18 C6 A A 20 -12.058 -16.761 -6.178 1.00 31.14 C
ATOM 19 N6 A A 20 -10.811 -16.782 -6.646 1.00 31.57 N
ATOM 20 N1 A A 20 -13.056 -16.422 -7.023 1.00 30.17 N
ATOM 21 C2 A A 20 -14.301 -16.391 -6.551 1.00 30.99 C
ATOM 22 N3 A A 20 -14.745 -16.652 -5.324 1.00 30.86 N
ATOM 23 C4 A A 20 -13.731 -16.988 -4.511 1.00 30.65 C
ATOM 24 P C A 21 -16.508 -22.003 -1.846 1.00 37.15 P
ATOM 25 OP1 C A 21 -17.825 -22.665 -1.687 1.00 37.90 O
ATOM 26 OP2 C A 21 -15.329 -22.511 -1.088 1.00 37.34 O
ATOM 27 O5' C A 21 -16.141 -21.997 -3.394 1.00 36.73 O
TER
ATOM 1 O3' U B 17 -4.807 -12.573 -2.234 1.00 38.34 O
ATOM 2 P U B 18 -3.906 -13.238 -1.090 1.00 39.03 P
ATOM 3 OP1 U B 18 -3.704 -12.202 -0.042 1.00 38.83 O
ATOM 4 OP2 U B 18 -2.728 -13.833 -1.767 1.00 38.64 O
ATOM 5 O5' U B 18 -4.811 -14.409 -0.486 1.00 38.16 O
ATOM 6 C5' U B 18 -5.446 -14.266 0.812 1.00 37.65 C
ATOM 7 C4' U B 18 -6.234 -15.512 1.162 1.00 37.18 C
ATOM 8 O4' U B 18 -7.219 -15.755 0.127 1.00 37.16 O
ATOM 9 C3' U B 18 -5.414 -16.794 1.289 1.00 36.82 C
ATOM 10 O3' U B 18 -6.023 -17.717 2.209 1.00 37.34 O
ATOM 11 C2' U B 18 -5.577 -17.421 -0.089 1.00 36.38 C
ATOM 12 O2' U B 18 -5.417 -18.820 -0.061 1.00 36.64 O
ATOM 13 C1' U B 18 -7.020 -17.038 -0.418 1.00 36.50 C
ATOM 14 N1 U B 18 -7.375 -16.984 -1.843 1.00 35.91 N
ATOM 15 C2 U B 18 -8.618 -17.482 -2.210 1.00 35.39 C
ATOM 16 O2 U B 18 -9.403 -17.986 -1.413 1.00 33.90 O
ATOM 17 N3 U B 18 -8.911 -17.366 -3.544 1.00 35.41 N
ATOM 18 C4 U B 18 -8.117 -16.819 -4.526 1.00 35.10 C
ATOM 19 O4 U B 18 -8.560 -16.707 -5.668 1.00 33.35 O
ATOM 20 C5 U B 18 -6.843 -16.351 -4.072 1.00 35.62 C
ATOM 21 C6 U B 18 -6.523 -16.447 -2.780 1.00 35.99 C
ATOM 22 P C B 19 -6.692 -17.196 3.588 1.00 38.64 P
ATOM 23 OP1 C B 19 -5.946 -15.994 4.071 1.00 38.43 O
ATOM 24 OP2 C B 19 -6.838 -18.378 4.487 1.00 38.26 O
ATOM 25 O5' C B 19 -8.169 -16.761 3.164 1.00 36.39 O
TER
ATOM 2 P A A 20 -12.294 -20.347 1.225 1.00 35.05 P
ATOM 3 OP1 A A 20 -12.965 -21.333 2.124 1.00 33.01 O
ATOM 4 OP2 A A 20 -11.084 -20.761 0.464 1.00 34.67 O
ATOM 5 O5' A A 20 -13.377 -19.817 0.184 1.00 34.51 O
ATOM 6 C5' A A 20 -14.622 -19.275 0.650 1.00 33.44 C
ATOM 7 C4' A A 20 -15.398 -18.676 -0.491 1.00 33.12 C
ATOM 8 O4' A A 20 -14.717 -17.512 -1.024 1.00 32.30 O
ATOM 9 C3' A A 20 -15.613 -19.560 -1.702 1.00 33.72 C
ATOM 10 O3' A A 20 -16.687 -20.453 -1.486 1.00 35.51 O
ATOM 11 C2' A A 20 -15.932 -18.542 -2.790 1.00 33.10 C
ATOM 12 O2' A A 20 -17.274 -18.106 -2.741 1.00 33.14 O
ATOM 13 C1' A A 20 -15.038 -17.368 -2.396 1.00 31.81 C
ATOM 14 N9 A A 20 -13.804 -17.322 -3.181 1.00 31.49 N
ATOM 15 C8 A A 20 -12.516 -17.590 -2.792 1.00 30.76 C
ATOM 16 N7 A A 20 -11.639 -17.454 -3.753 1.00 29.89 N
ATOM 17 C5 A A 20 -12.398 -17.069 -4.847 1.00 29.93 C
ATOM 18 C6 A A 20 -12.058 -16.761 -6.178 1.00 31.14 C
ATOM 19 N6 A A 20 -10.811 -16.782 -6.646 1.00 31.57 N
ATOM 20 N1 A A 20 -13.056 -16.422 -7.023 1.00 30.17 N
ATOM 21 C2 A A 20 -14.301 -16.391 -6.551 1.00 30.99 C
ATOM 22 N3 A A 20 -14.745 -16.652 -5.324 1.00 30.86 N
ATOM 23 C4 A A 20 -13.731 -16.988 -4.511 1.00 30.65 C
ATOM 24 P C A 21 -16.508 -22.003 -1.846 1.00 37.15 P
ATOM 25 OP1 C A 21 -17.825 -22.665 -1.687 1.00 37.90 O
ATOM 26 OP2 C A 21 -15.329 -22.511 -1.088 1.00 37.34 O
ATOM 27 O5' C A 21 -16.141 -21.997 -3.394 1.00 36.73 O
TER
ATOM 1 O3' U B 17 -4.807 -12.573 -2.234 1.00 38.34 O
ATOM 2 P U B 18 -3.906 -13.238 -1.090 1.00 39.03 P
ATOM 3 OP1 U B 18 -3.704 -12.202 -0.042 1.00 38.83 O
ATOM 4 OP2 U B 18 -2.728 -13.833 -1.767 1.00 38.64 O
ATOM 5 O5' U B 18 -4.811 -14.409 -0.486 1.00 38.16 O
ATOM 6 C5' U B 18 -5.446 -14.266 0.812 1.00 37.65 C
ATOM 7 C4' U B 18 -6.234 -15.512 1.162 1.00 37.18 C
ATOM 8 O4' U B 18 -7.219 -15.755 0.127 1.00 37.16 O
ATOM 9 C3' U B 18 -5.414 -16.794 1.289 1.00 36.82 C
ATOM 10 O3' U B 18 -6.023 -17.717 2.209 1.00 37.34 O
ATOM 11 C2' U B 18 -5.577 -17.421 -0.089 1.00 36.38 C
ATOM 12 O2' U B 18 -5.417 -18.820 -0.061 1.00 36.64 O
ATOM 13 C1' U B 18 -7.020 -17.038 -0.418 1.00 36.50 C
ATOM 14 N1 U B 18 -7.375 -16.984 -1.843 1.00 35.91 N
ATOM 15 C2 U B 18 -8.618 -17.482 -2.210 1.00 35.39 C
ATOM 16 O2 U B 18 -9.403 -17.986 -1.413 1.00 33.90 O
ATOM 17 N3 U B 18 -8.911 -17.366 -3.544 1.00 35.41 N
ATOM 18 C4 U B 18 -8.117 -16.819 -4.526 1.00 35.10 C
ATOM 19 O4 U B 18 -8.560 -16.707 -5.668 1.00 33.35 O
ATOM 20 C5 U B 18 -6.843 -16.351 -4.072 1.00 35.62 C
ATOM 21 C6 U B 18 -6.523 -16.447 -2.780 1.00 35.99 C
ATOM 22 P C B 19 -6.692 -17.196 3.588 1.00 38.64 P
ATOM 23 OP1 C B 19 -5.946 -15.994 4.071 1.00 38.43 O
ATOM 24 OP2 C B 19 -6.838 -18.378 4.487 1.00 38.26 O
ATOM 25 O5' C B 19 -8.169 -16.761 3.164 1.00 36.39 O
TER
Atoms:
OP1: (-12.965,-21.333,2.124)
OP2: (-11.084,-20.761,0.464)
C3': (-15.613,-19.560,-1.702)
C1': (-15.038,-17.368,-2.396)
C5': (-14.622,-19.275,0.650)
O4': (-14.717,-17.512,-1.024)
C8: (-12.516,-17.590,-2.792)
O2': (-17.274,-18.106,-2.741)
C6: (-12.058,-16.761,-6.178)
C5: (-12.398,-17.069,-4.847)
C4: (-13.731,-16.988,-4.511)
P: (-12.294,-20.347,1.225)
C4': (-15.398,-18.676,-0.491)
C2': (-15.932,-18.542,-2.790)
C2: (-14.301,-16.391,-6.551)
N1: (-13.056,-16.422,-7.023)
N3: (-14.745,-16.652,-5.324)
N6: (-10.811,-16.782,-6.646)
N7: (-11.639,-17.454,-3.753)
N9: (-13.804,-17.322,-3.181)
O5': (-13.377,-19.817,0.184)
O3': (-16.687,-20.453,-1.486)
OP2: (-11.084,-20.761,0.464)
C3': (-15.613,-19.560,-1.702)
C1': (-15.038,-17.368,-2.396)
C5': (-14.622,-19.275,0.650)
O4': (-14.717,-17.512,-1.024)
C8: (-12.516,-17.590,-2.792)
O2': (-17.274,-18.106,-2.741)
C6: (-12.058,-16.761,-6.178)
C5: (-12.398,-17.069,-4.847)
C4: (-13.731,-16.988,-4.511)
P: (-12.294,-20.347,1.225)
C4': (-15.398,-18.676,-0.491)
C2': (-15.932,-18.542,-2.790)
C2: (-14.301,-16.391,-6.551)
N1: (-13.056,-16.422,-7.023)
N3: (-14.745,-16.652,-5.324)
N6: (-10.811,-16.782,-6.646)
N7: (-11.639,-17.454,-3.753)
N9: (-13.804,-17.322,-3.181)
O5': (-13.377,-19.817,0.184)
O3': (-16.687,-20.453,-1.486)
C4: (-8.117,-16.819,-4.526)
N3: (-8.911,-17.366,-3.544)
OP1: (-3.704,-12.202,-0.042)
OP2: (-2.728,-13.833,-1.767)
C2: (-8.618,-17.482,-2.210)
C1': (-7.020,-17.038,-0.418)
C3': (-5.414,-16.794,1.289)
O5': (-4.811,-14.409,-0.486)
O4': (-7.219,-15.755,0.127)
C5': (-5.446,-14.266,0.812)
P: (-3.906,-13.238,-1.090)
C4': (-6.234,-15.512,1.162)
C2': (-5.577,-17.421,-0.089)
O2': (-5.417,-18.820,-0.061)
N1: (-7.375,-16.984,-1.843)
O4: (-8.560,-16.707,-5.668)
O2: (-9.403,-17.986,-1.413)
C6: (-6.523,-16.447,-2.780)
C5: (-6.843,-16.351,-4.072)
O3': (-6.023,-17.717,2.209)
N3: (-8.911,-17.366,-3.544)
OP1: (-3.704,-12.202,-0.042)
OP2: (-2.728,-13.833,-1.767)
C2: (-8.618,-17.482,-2.210)
C1': (-7.020,-17.038,-0.418)
C3': (-5.414,-16.794,1.289)
O5': (-4.811,-14.409,-0.486)
O4': (-7.219,-15.755,0.127)
C5': (-5.446,-14.266,0.812)
P: (-3.906,-13.238,-1.090)
C4': (-6.234,-15.512,1.162)
C2': (-5.577,-17.421,-0.089)
O2': (-5.417,-18.820,-0.061)
N1: (-7.375,-16.984,-1.843)
O4: (-8.560,-16.707,-5.668)
O2: (-9.403,-17.986,-1.413)
C6: (-6.523,-16.447,-2.780)
C5: (-6.843,-16.351,-4.072)
O3': (-6.023,-17.717,2.209)
Image (generated by PyMOL):