Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0551:0582
Extra
PDB:
ATOM 1 O3' A A 550 -15.841 99.551 95.639 1.00 57.85 O
ATOM 2 P C A 551 -15.001 98.436 96.417 1.00 57.19 P
ATOM 3 OP1 C A 551 -15.646 97.122 96.161 1.00 56.43 O
ATOM 4 OP2 C A 551 -14.791 98.907 97.810 1.00 54.11 O
ATOM 5 O5' C A 551 -13.611 98.430 95.646 1.00 58.38 O
ATOM 6 C5' C A 551 -13.555 98.063 94.260 1.00 57.90 C
ATOM 7 C4' C A 551 -12.175 98.313 93.707 1.00 58.49 C
ATOM 8 O4' C A 551 -11.869 99.724 93.784 1.00 58.26 O
ATOM 9 C3' C A 551 -11.017 97.662 94.438 1.00 58.27 C
ATOM 10 O3' C A 551 -10.874 96.307 94.030 1.00 61.09 O
ATOM 11 C2' C A 551 -9.842 98.495 93.952 1.00 57.78 C
ATOM 12 O2' C A 551 -9.449 98.101 92.655 1.00 57.55 O
ATOM 13 C1' C A 551 -10.469 99.890 93.873 1.00 57.79 C
ATOM 14 N1 C A 551 -10.171 100.774 95.011 1.00 59.41 N
ATOM 15 C2 C A 551 -9.026 101.584 94.955 1.00 60.66 C
ATOM 16 O2 C A 551 -8.294 101.529 93.950 1.00 62.24 O
ATOM 17 N3 C A 551 -8.745 102.403 95.994 1.00 59.41 N
ATOM 18 C4 C A 551 -9.546 102.430 97.055 1.00 59.13 C
ATOM 19 N4 C A 551 -9.222 103.245 98.057 1.00 60.59 N
ATOM 20 C5 C A 551 -10.715 101.620 97.139 1.00 59.66 C
ATOM 21 C6 C A 551 -10.987 100.814 96.106 1.00 59.08 C
ATOM 22 P G A 552 -10.705 95.151 95.134 1.00 63.55 P
ATOM 23 OP1 G A 552 -10.692 93.845 94.412 1.00 62.83 O
ATOM 24 OP2 G A 552 -11.691 95.382 96.216 1.00 63.34 O
ATOM 25 O5' G A 552 -9.259 95.415 95.748 1.00 65.05 O
TER
ATOM 1 O3' A B 581 0.465 107.234 97.521 1.00 55.39 O
ATOM 2 P C B 582 -0.589 108.133 96.721 1.00 52.81 P
ATOM 3 OP1 C B 582 0.026 109.453 96.443 1.00 53.17 O
ATOM 4 OP2 C B 582 -1.852 108.071 97.474 1.00 56.69 O
ATOM 5 O5' C B 582 -0.773 107.359 95.342 1.00 51.35 O
ATOM 6 C5' C B 582 0.324 107.249 94.436 1.00 52.78 C
ATOM 7 C4' C B 582 -0.022 106.352 93.276 1.00 54.05 C
ATOM 8 O4' C B 582 -0.351 105.028 93.761 1.00 56.72 O
ATOM 9 C3' C B 582 -1.216 106.751 92.430 1.00 52.98 C
ATOM 10 O3' C B 582 -0.857 107.756 91.488 1.00 50.52 O
ATOM 11 C2' C B 582 -1.585 105.429 91.766 1.00 55.15 C
ATOM 12 O2' C B 582 -0.759 105.094 90.668 1.00 53.50 O
ATOM 13 C1' C B 582 -1.317 104.437 92.903 1.00 57.95 C
ATOM 14 N1 C B 582 -2.522 104.131 93.695 1.00 61.28 N
ATOM 15 C2 C B 582 -3.351 103.070 93.290 1.00 63.10 C
ATOM 16 O2 C B 582 -3.014 102.372 92.317 1.00 62.47 O
ATOM 17 N3 C B 582 -4.492 102.829 93.976 1.00 65.13 N
ATOM 18 C4 C B 582 -4.807 103.584 95.033 1.00 65.54 C
ATOM 19 N4 C B 582 -5.960 103.333 95.661 1.00 67.43 N
ATOM 20 C5 C B 582 -3.961 104.638 95.490 1.00 63.90 C
ATOM 21 C6 C B 582 -2.845 104.877 94.798 1.00 62.15 C
ATOM 22 P U B 583 -1.945 108.841 91.025 1.00 50.11 P
ATOM 23 OP1 U B 583 -1.349 109.661 89.943 1.00 50.41 O
ATOM 24 OP2 U B 583 -2.478 109.515 92.233 1.00 48.66 O
ATOM 25 O5' U B 583 -3.089 107.954 90.370 1.00 49.36 O
TER
ATOM 2 P C A 551 -15.001 98.436 96.417 1.00 57.19 P
ATOM 3 OP1 C A 551 -15.646 97.122 96.161 1.00 56.43 O
ATOM 4 OP2 C A 551 -14.791 98.907 97.810 1.00 54.11 O
ATOM 5 O5' C A 551 -13.611 98.430 95.646 1.00 58.38 O
ATOM 6 C5' C A 551 -13.555 98.063 94.260 1.00 57.90 C
ATOM 7 C4' C A 551 -12.175 98.313 93.707 1.00 58.49 C
ATOM 8 O4' C A 551 -11.869 99.724 93.784 1.00 58.26 O
ATOM 9 C3' C A 551 -11.017 97.662 94.438 1.00 58.27 C
ATOM 10 O3' C A 551 -10.874 96.307 94.030 1.00 61.09 O
ATOM 11 C2' C A 551 -9.842 98.495 93.952 1.00 57.78 C
ATOM 12 O2' C A 551 -9.449 98.101 92.655 1.00 57.55 O
ATOM 13 C1' C A 551 -10.469 99.890 93.873 1.00 57.79 C
ATOM 14 N1 C A 551 -10.171 100.774 95.011 1.00 59.41 N
ATOM 15 C2 C A 551 -9.026 101.584 94.955 1.00 60.66 C
ATOM 16 O2 C A 551 -8.294 101.529 93.950 1.00 62.24 O
ATOM 17 N3 C A 551 -8.745 102.403 95.994 1.00 59.41 N
ATOM 18 C4 C A 551 -9.546 102.430 97.055 1.00 59.13 C
ATOM 19 N4 C A 551 -9.222 103.245 98.057 1.00 60.59 N
ATOM 20 C5 C A 551 -10.715 101.620 97.139 1.00 59.66 C
ATOM 21 C6 C A 551 -10.987 100.814 96.106 1.00 59.08 C
ATOM 22 P G A 552 -10.705 95.151 95.134 1.00 63.55 P
ATOM 23 OP1 G A 552 -10.692 93.845 94.412 1.00 62.83 O
ATOM 24 OP2 G A 552 -11.691 95.382 96.216 1.00 63.34 O
ATOM 25 O5' G A 552 -9.259 95.415 95.748 1.00 65.05 O
TER
ATOM 1 O3' A B 581 0.465 107.234 97.521 1.00 55.39 O
ATOM 2 P C B 582 -0.589 108.133 96.721 1.00 52.81 P
ATOM 3 OP1 C B 582 0.026 109.453 96.443 1.00 53.17 O
ATOM 4 OP2 C B 582 -1.852 108.071 97.474 1.00 56.69 O
ATOM 5 O5' C B 582 -0.773 107.359 95.342 1.00 51.35 O
ATOM 6 C5' C B 582 0.324 107.249 94.436 1.00 52.78 C
ATOM 7 C4' C B 582 -0.022 106.352 93.276 1.00 54.05 C
ATOM 8 O4' C B 582 -0.351 105.028 93.761 1.00 56.72 O
ATOM 9 C3' C B 582 -1.216 106.751 92.430 1.00 52.98 C
ATOM 10 O3' C B 582 -0.857 107.756 91.488 1.00 50.52 O
ATOM 11 C2' C B 582 -1.585 105.429 91.766 1.00 55.15 C
ATOM 12 O2' C B 582 -0.759 105.094 90.668 1.00 53.50 O
ATOM 13 C1' C B 582 -1.317 104.437 92.903 1.00 57.95 C
ATOM 14 N1 C B 582 -2.522 104.131 93.695 1.00 61.28 N
ATOM 15 C2 C B 582 -3.351 103.070 93.290 1.00 63.10 C
ATOM 16 O2 C B 582 -3.014 102.372 92.317 1.00 62.47 O
ATOM 17 N3 C B 582 -4.492 102.829 93.976 1.00 65.13 N
ATOM 18 C4 C B 582 -4.807 103.584 95.033 1.00 65.54 C
ATOM 19 N4 C B 582 -5.960 103.333 95.661 1.00 67.43 N
ATOM 20 C5 C B 582 -3.961 104.638 95.490 1.00 63.90 C
ATOM 21 C6 C B 582 -2.845 104.877 94.798 1.00 62.15 C
ATOM 22 P U B 583 -1.945 108.841 91.025 1.00 50.11 P
ATOM 23 OP1 U B 583 -1.349 109.661 89.943 1.00 50.41 O
ATOM 24 OP2 U B 583 -2.478 109.515 92.233 1.00 48.66 O
ATOM 25 O5' U B 583 -3.089 107.954 90.370 1.00 49.36 O
TER
Atoms:
C2: (-9.026,101.584,94.955)
OP1: (-15.646,97.122,96.161)
OP2: (-14.791,98.907,97.810)
C4: (-9.546,102.430,97.055)
O5': (-13.611,98.430,95.646)
C3': (-11.017,97.662,94.438)
C1': (-10.469,99.890,93.873)
O4': (-11.869,99.724,93.784)
C5': (-13.555,98.063,94.260)
P: (-15.001,98.436,96.417)
O2: (-8.294,101.529,93.950)
C4': (-12.175,98.313,93.707)
C2': (-9.842,98.495,93.952)
O2': (-9.449,98.101,92.655)
N1: (-10.171,100.774,95.011)
N3: (-8.745,102.403,95.994)
N4: (-9.222,103.245,98.057)
C6: (-10.987,100.814,96.106)
C5: (-10.715,101.620,97.139)
O3': (-10.874,96.307,94.030)
OP1: (-15.646,97.122,96.161)
OP2: (-14.791,98.907,97.810)
C4: (-9.546,102.430,97.055)
O5': (-13.611,98.430,95.646)
C3': (-11.017,97.662,94.438)
C1': (-10.469,99.890,93.873)
O4': (-11.869,99.724,93.784)
C5': (-13.555,98.063,94.260)
P: (-15.001,98.436,96.417)
O2: (-8.294,101.529,93.950)
C4': (-12.175,98.313,93.707)
C2': (-9.842,98.495,93.952)
O2': (-9.449,98.101,92.655)
N1: (-10.171,100.774,95.011)
N3: (-8.745,102.403,95.994)
N4: (-9.222,103.245,98.057)
C6: (-10.987,100.814,96.106)
C5: (-10.715,101.620,97.139)
O3': (-10.874,96.307,94.030)
C2: (-3.351,103.070,93.290)
OP1: (0.026,109.453,96.443)
OP2: (-1.852,108.071,97.474)
C4: (-4.807,103.584,95.033)
O5': (-0.773,107.359,95.342)
C3': (-1.216,106.751,92.430)
C1': (-1.317,104.437,92.903)
O4': (-0.351,105.028,93.761)
C5': (0.324,107.249,94.436)
P: (-0.589,108.133,96.721)
O2: (-3.014,102.372,92.317)
C4': (-0.022,106.352,93.276)
C2': (-1.585,105.429,91.766)
O2': (-0.759,105.094,90.668)
N1: (-2.522,104.131,93.695)
N3: (-4.492,102.829,93.976)
N4: (-5.960,103.333,95.661)
C6: (-2.845,104.877,94.798)
C5: (-3.961,104.638,95.490)
O3': (-0.857,107.756,91.488)
OP1: (0.026,109.453,96.443)
OP2: (-1.852,108.071,97.474)
C4: (-4.807,103.584,95.033)
O5': (-0.773,107.359,95.342)
C3': (-1.216,106.751,92.430)
C1': (-1.317,104.437,92.903)
O4': (-0.351,105.028,93.761)
C5': (0.324,107.249,94.436)
P: (-0.589,108.133,96.721)
O2: (-3.014,102.372,92.317)
C4': (-0.022,106.352,93.276)
C2': (-1.585,105.429,91.766)
O2': (-0.759,105.094,90.668)
N1: (-2.522,104.131,93.695)
N3: (-4.492,102.829,93.976)
N4: (-5.960,103.333,95.661)
C6: (-2.845,104.877,94.798)
C5: (-3.961,104.638,95.490)
O3': (-0.857,107.756,91.488)
Image (generated by PyMOL):