Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A559:A574
Extra
PDB:
ATOM 1 O3' C A 558 -3.944 99.212 122.357 1.00 72.80 O
ATOM 2 P C A 559 -4.397 98.279 123.587 1.00 75.03 P
ATOM 3 OP1 C A 559 -3.705 98.776 124.805 1.00 74.13 O
ATOM 4 OP2 C A 559 -4.236 96.854 123.180 1.00 74.43 O
ATOM 5 O5' C A 559 -5.955 98.582 123.739 1.00 75.15 O
ATOM 6 C5' C A 559 -6.427 99.914 124.064 1.00 76.65 C
ATOM 7 C4' C A 559 -7.933 99.982 123.957 1.00 77.15 C
ATOM 8 O4' C A 559 -8.308 99.717 122.582 1.00 76.48 O
ATOM 9 C3' C A 559 -8.680 98.942 124.777 1.00 78.23 C
ATOM 10 O3' C A 559 -8.922 99.394 126.105 1.00 80.24 O
ATOM 11 C2' C A 559 -9.966 98.746 123.985 1.00 76.89 C
ATOM 12 O2' C A 559 -10.927 99.747 124.242 1.00 76.52 O
ATOM 13 C1' C A 559 -9.455 98.884 122.546 1.00 75.07 C
ATOM 14 N1 C A 559 -9.078 97.603 121.907 1.00 71.92 N
ATOM 15 C2 C A 559 -10.080 96.810 121.343 1.00 71.03 C
ATOM 16 O2 C A 559 -11.257 97.211 121.375 1.00 70.44 O
ATOM 17 N3 C A 559 -9.742 95.626 120.774 1.00 70.20 N
ATOM 18 C4 C A 559 -8.467 95.232 120.754 1.00 68.68 C
ATOM 19 N4 C A 559 -8.191 94.049 120.198 1.00 68.25 N
ATOM 20 C5 C A 559 -7.427 96.026 121.305 1.00 68.42 C
ATOM 21 C6 C A 559 -7.772 97.190 121.868 1.00 69.69 C
ATOM 22 P G A 560 -8.731 98.383 127.331 1.00 82.44 P
ATOM 23 OP1 G A 560 -9.050 99.129 128.578 1.00 81.96 O
ATOM 24 OP2 G A 560 -7.385 97.786 127.160 1.00 82.70 O
ATOM 25 O5' G A 560 -9.825 97.240 127.073 1.00 83.99 O
TER
ATOM 1 O3' C B 573 -10.693 84.683 116.819 1.00 69.02 O
ATOM 2 P C B 574 -10.754 85.565 115.466 1.00 67.20 P
ATOM 3 OP1 C B 574 -11.859 85.068 114.604 1.00 66.29 O
ATOM 4 OP2 C B 574 -9.385 85.653 114.912 1.00 67.61 O
ATOM 5 O5' C B 574 -11.214 86.999 115.968 1.00 64.82 O
ATOM 6 C5' C B 574 -12.571 87.212 116.382 1.00 66.00 C
ATOM 7 C4' C B 574 -12.745 88.608 116.912 1.00 66.70 C
ATOM 8 O4' C B 574 -11.888 88.789 118.062 1.00 67.39 O
ATOM 9 C3' C B 574 -12.326 89.709 115.956 1.00 67.57 C
ATOM 10 O3' C B 574 -13.366 90.010 115.047 1.00 67.32 O
ATOM 11 C2' C B 574 -12.010 90.864 116.896 1.00 68.70 C
ATOM 12 O2' C B 574 -13.152 91.578 117.331 1.00 69.55 O
ATOM 13 C1' C B 574 -11.376 90.115 118.071 1.00 69.00 C
ATOM 14 N1 C B 574 -9.903 90.055 117.987 1.00 70.23 N
ATOM 15 C2 C B 574 -9.164 91.142 118.462 1.00 70.07 C
ATOM 16 O2 C B 574 -9.766 92.130 118.916 1.00 67.70 O
ATOM 17 N3 C B 574 -7.816 91.093 118.412 1.00 71.15 N
ATOM 18 C4 C B 574 -7.202 90.019 117.906 1.00 71.71 C
ATOM 19 N4 C B 574 -5.865 90.013 117.896 1.00 72.89 N
ATOM 20 C5 C B 574 -7.928 88.904 117.397 1.00 70.73 C
ATOM 21 C6 C B 574 -9.264 88.962 117.457 1.00 70.96 C
ATOM 22 P A B 575 -13.020 90.475 113.550 1.00 69.20 P
ATOM 23 OP1 A B 575 -12.289 91.769 113.577 1.00 68.17 O
ATOM 24 OP2 A B 575 -14.260 90.347 112.755 1.00 69.81 O
ATOM 25 O5' A B 575 -12.034 89.373 112.984 1.00 68.11 O
TER
ATOM 2 P C A 559 -4.397 98.279 123.587 1.00 75.03 P
ATOM 3 OP1 C A 559 -3.705 98.776 124.805 1.00 74.13 O
ATOM 4 OP2 C A 559 -4.236 96.854 123.180 1.00 74.43 O
ATOM 5 O5' C A 559 -5.955 98.582 123.739 1.00 75.15 O
ATOM 6 C5' C A 559 -6.427 99.914 124.064 1.00 76.65 C
ATOM 7 C4' C A 559 -7.933 99.982 123.957 1.00 77.15 C
ATOM 8 O4' C A 559 -8.308 99.717 122.582 1.00 76.48 O
ATOM 9 C3' C A 559 -8.680 98.942 124.777 1.00 78.23 C
ATOM 10 O3' C A 559 -8.922 99.394 126.105 1.00 80.24 O
ATOM 11 C2' C A 559 -9.966 98.746 123.985 1.00 76.89 C
ATOM 12 O2' C A 559 -10.927 99.747 124.242 1.00 76.52 O
ATOM 13 C1' C A 559 -9.455 98.884 122.546 1.00 75.07 C
ATOM 14 N1 C A 559 -9.078 97.603 121.907 1.00 71.92 N
ATOM 15 C2 C A 559 -10.080 96.810 121.343 1.00 71.03 C
ATOM 16 O2 C A 559 -11.257 97.211 121.375 1.00 70.44 O
ATOM 17 N3 C A 559 -9.742 95.626 120.774 1.00 70.20 N
ATOM 18 C4 C A 559 -8.467 95.232 120.754 1.00 68.68 C
ATOM 19 N4 C A 559 -8.191 94.049 120.198 1.00 68.25 N
ATOM 20 C5 C A 559 -7.427 96.026 121.305 1.00 68.42 C
ATOM 21 C6 C A 559 -7.772 97.190 121.868 1.00 69.69 C
ATOM 22 P G A 560 -8.731 98.383 127.331 1.00 82.44 P
ATOM 23 OP1 G A 560 -9.050 99.129 128.578 1.00 81.96 O
ATOM 24 OP2 G A 560 -7.385 97.786 127.160 1.00 82.70 O
ATOM 25 O5' G A 560 -9.825 97.240 127.073 1.00 83.99 O
TER
ATOM 1 O3' C B 573 -10.693 84.683 116.819 1.00 69.02 O
ATOM 2 P C B 574 -10.754 85.565 115.466 1.00 67.20 P
ATOM 3 OP1 C B 574 -11.859 85.068 114.604 1.00 66.29 O
ATOM 4 OP2 C B 574 -9.385 85.653 114.912 1.00 67.61 O
ATOM 5 O5' C B 574 -11.214 86.999 115.968 1.00 64.82 O
ATOM 6 C5' C B 574 -12.571 87.212 116.382 1.00 66.00 C
ATOM 7 C4' C B 574 -12.745 88.608 116.912 1.00 66.70 C
ATOM 8 O4' C B 574 -11.888 88.789 118.062 1.00 67.39 O
ATOM 9 C3' C B 574 -12.326 89.709 115.956 1.00 67.57 C
ATOM 10 O3' C B 574 -13.366 90.010 115.047 1.00 67.32 O
ATOM 11 C2' C B 574 -12.010 90.864 116.896 1.00 68.70 C
ATOM 12 O2' C B 574 -13.152 91.578 117.331 1.00 69.55 O
ATOM 13 C1' C B 574 -11.376 90.115 118.071 1.00 69.00 C
ATOM 14 N1 C B 574 -9.903 90.055 117.987 1.00 70.23 N
ATOM 15 C2 C B 574 -9.164 91.142 118.462 1.00 70.07 C
ATOM 16 O2 C B 574 -9.766 92.130 118.916 1.00 67.70 O
ATOM 17 N3 C B 574 -7.816 91.093 118.412 1.00 71.15 N
ATOM 18 C4 C B 574 -7.202 90.019 117.906 1.00 71.71 C
ATOM 19 N4 C B 574 -5.865 90.013 117.896 1.00 72.89 N
ATOM 20 C5 C B 574 -7.928 88.904 117.397 1.00 70.73 C
ATOM 21 C6 C B 574 -9.264 88.962 117.457 1.00 70.96 C
ATOM 22 P A B 575 -13.020 90.475 113.550 1.00 69.20 P
ATOM 23 OP1 A B 575 -12.289 91.769 113.577 1.00 68.17 O
ATOM 24 OP2 A B 575 -14.260 90.347 112.755 1.00 69.81 O
ATOM 25 O5' A B 575 -12.034 89.373 112.984 1.00 68.11 O
TER
Atoms:
C2: (-10.080,96.810,121.343)
OP1: (-3.705,98.776,124.805)
OP2: (-4.236,96.854,123.180)
C4: (-8.467,95.232,120.754)
O5': (-5.955,98.582,123.739)
C3': (-8.680,98.942,124.777)
C1': (-9.455,98.884,122.546)
O4': (-8.308,99.717,122.582)
C5': (-6.427,99.914,124.064)
P: (-4.397,98.279,123.587)
O2: (-11.257,97.211,121.375)
C4': (-7.933,99.982,123.957)
C2': (-9.966,98.746,123.985)
O2': (-10.927,99.747,124.242)
N1: (-9.078,97.603,121.907)
N3: (-9.742,95.626,120.774)
N4: (-8.191,94.049,120.198)
C6: (-7.772,97.190,121.868)
C5: (-7.427,96.026,121.305)
O3': (-8.922,99.394,126.105)
OP1: (-3.705,98.776,124.805)
OP2: (-4.236,96.854,123.180)
C4: (-8.467,95.232,120.754)
O5': (-5.955,98.582,123.739)
C3': (-8.680,98.942,124.777)
C1': (-9.455,98.884,122.546)
O4': (-8.308,99.717,122.582)
C5': (-6.427,99.914,124.064)
P: (-4.397,98.279,123.587)
O2: (-11.257,97.211,121.375)
C4': (-7.933,99.982,123.957)
C2': (-9.966,98.746,123.985)
O2': (-10.927,99.747,124.242)
N1: (-9.078,97.603,121.907)
N3: (-9.742,95.626,120.774)
N4: (-8.191,94.049,120.198)
C6: (-7.772,97.190,121.868)
C5: (-7.427,96.026,121.305)
O3': (-8.922,99.394,126.105)
C2: (-9.164,91.142,118.462)
OP1: (-11.859,85.068,114.604)
OP2: (-9.385,85.653,114.912)
C4: (-7.202,90.019,117.906)
O5': (-11.214,86.999,115.968)
C3': (-12.326,89.709,115.956)
C1': (-11.376,90.115,118.071)
O4': (-11.888,88.789,118.062)
C5': (-12.571,87.212,116.382)
P: (-10.754,85.565,115.466)
O2: (-9.766,92.130,118.916)
C4': (-12.745,88.608,116.912)
C2': (-12.010,90.864,116.896)
O2': (-13.152,91.578,117.331)
N1: (-9.903,90.055,117.987)
N3: (-7.816,91.093,118.412)
N4: (-5.865,90.013,117.896)
C6: (-9.264,88.962,117.457)
C5: (-7.928,88.904,117.397)
O3': (-13.366,90.010,115.047)
OP1: (-11.859,85.068,114.604)
OP2: (-9.385,85.653,114.912)
C4: (-7.202,90.019,117.906)
O5': (-11.214,86.999,115.968)
C3': (-12.326,89.709,115.956)
C1': (-11.376,90.115,118.071)
O4': (-11.888,88.789,118.062)
C5': (-12.571,87.212,116.382)
P: (-10.754,85.565,115.466)
O2: (-9.766,92.130,118.916)
C4': (-12.745,88.608,116.912)
C2': (-12.010,90.864,116.896)
O2': (-13.152,91.578,117.331)
N1: (-9.903,90.055,117.987)
N3: (-7.816,91.093,118.412)
N4: (-5.865,90.013,117.896)
C6: (-9.264,88.962,117.457)
C5: (-7.928,88.904,117.397)
O3': (-13.366,90.010,115.047)
Image (generated by PyMOL):