Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.279 99.376 121.747 1.00 70.73 O
ATOM 2 P C A 559 -4.644 98.363 122.942 1.00 73.33 P
ATOM 3 OP1 C A 559 -3.929 98.840 124.159 1.00 72.22 O
ATOM 4 OP2 C A 559 -4.435 96.966 122.465 1.00 71.30 O
ATOM 5 O5' C A 559 -6.205 98.594 123.155 1.00 73.39 O
ATOM 6 C5' C A 559 -6.729 99.907 123.440 1.00 75.82 C
ATOM 7 C4' C A 559 -8.232 99.899 123.321 1.00 77.23 C
ATOM 8 O4' C A 559 -8.590 99.558 121.956 1.00 77.03 O
ATOM 9 C3' C A 559 -8.922 98.839 124.164 1.00 78.62 C
ATOM 10 O3' C A 559 -9.124 99.268 125.506 1.00 80.37 O
ATOM 11 C2' C A 559 -10.218 98.607 123.402 1.00 77.16 C
ATOM 12 O2' C A 559 -11.175 99.620 123.638 1.00 76.73 O
ATOM 13 C1' C A 559 -9.725 98.705 121.957 1.00 75.93 C
ATOM 14 N1 C A 559 -9.331 97.409 121.371 1.00 73.97 N
ATOM 15 C2 C A 559 -10.318 96.600 120.789 1.00 74.19 C
ATOM 16 O2 C A 559 -11.497 96.987 120.796 1.00 75.26 O
ATOM 17 N3 C A 559 -9.962 95.418 120.233 1.00 73.87 N
ATOM 18 C4 C A 559 -8.683 95.033 120.244 1.00 73.01 C
ATOM 19 N4 C A 559 -8.378 93.864 119.672 1.00 71.84 N
ATOM 20 C5 C A 559 -7.660 95.832 120.837 1.00 72.37 C
ATOM 21 C6 C A 559 -8.025 96.999 121.383 1.00 72.51 C
ATOM 22 P G A 560 -8.975 98.210 126.705 1.00 81.79 P
ATOM 23 OP1 G A 560 -9.390 98.901 127.952 1.00 81.79 O
ATOM 24 OP2 G A 560 -7.624 97.600 126.619 1.00 81.61 O
ATOM 25 O5' G A 560 -10.061 97.094 126.364 1.00 83.09 O
TER
ATOM 1 O3' C B 573 -10.670 84.394 116.296 1.00 65.48 O
ATOM 2 P C B 574 -10.677 85.214 114.914 1.00 65.89 P
ATOM 3 OP1 C B 574 -11.701 84.612 114.021 1.00 64.80 O
ATOM 4 OP2 C B 574 -9.270 85.291 114.456 1.00 67.46 O
ATOM 5 O5' C B 574 -11.173 86.671 115.333 1.00 62.62 O
ATOM 6 C5' C B 574 -12.529 86.883 115.743 1.00 61.44 C
ATOM 7 C4' C B 574 -12.702 88.266 116.308 1.00 61.96 C
ATOM 8 O4' C B 574 -11.796 88.455 117.420 1.00 62.83 O
ATOM 9 C3' C B 574 -12.369 89.413 115.376 1.00 63.68 C
ATOM 10 O3' C B 574 -13.455 89.683 114.504 1.00 65.92 O
ATOM 11 C2' C B 574 -12.119 90.561 116.349 1.00 64.63 C
ATOM 12 O2' C B 574 -13.303 91.182 116.813 1.00 64.64 O
ATOM 13 C1' C B 574 -11.442 89.830 117.513 1.00 64.85 C
ATOM 14 N1 C B 574 -9.966 89.960 117.553 1.00 66.02 N
ATOM 15 C2 C B 574 -9.398 91.115 118.137 1.00 65.93 C
ATOM 16 O2 C B 574 -10.145 92.006 118.581 1.00 65.61 O
ATOM 17 N3 C B 574 -8.053 91.230 118.195 1.00 65.99 N
ATOM 18 C4 C B 574 -7.277 90.264 117.695 1.00 66.42 C
ATOM 19 N4 C B 574 -5.955 90.425 117.779 1.00 67.50 N
ATOM 20 C5 C B 574 -7.822 89.091 117.087 1.00 65.64 C
ATOM 21 C6 C B 574 -9.155 88.980 117.040 1.00 66.32 C
ATOM 22 P A B 575 -13.180 90.361 113.078 1.00 67.86 P
ATOM 23 OP1 A B 575 -12.644 91.728 113.317 1.00 67.93 O
ATOM 24 OP2 A B 575 -14.400 90.189 112.250 1.00 68.03 O
ATOM 25 O5' A B 575 -12.037 89.452 112.447 1.00 66.41 O
TER
ATOM 2 P C A 559 -4.644 98.363 122.942 1.00 73.33 P
ATOM 3 OP1 C A 559 -3.929 98.840 124.159 1.00 72.22 O
ATOM 4 OP2 C A 559 -4.435 96.966 122.465 1.00 71.30 O
ATOM 5 O5' C A 559 -6.205 98.594 123.155 1.00 73.39 O
ATOM 6 C5' C A 559 -6.729 99.907 123.440 1.00 75.82 C
ATOM 7 C4' C A 559 -8.232 99.899 123.321 1.00 77.23 C
ATOM 8 O4' C A 559 -8.590 99.558 121.956 1.00 77.03 O
ATOM 9 C3' C A 559 -8.922 98.839 124.164 1.00 78.62 C
ATOM 10 O3' C A 559 -9.124 99.268 125.506 1.00 80.37 O
ATOM 11 C2' C A 559 -10.218 98.607 123.402 1.00 77.16 C
ATOM 12 O2' C A 559 -11.175 99.620 123.638 1.00 76.73 O
ATOM 13 C1' C A 559 -9.725 98.705 121.957 1.00 75.93 C
ATOM 14 N1 C A 559 -9.331 97.409 121.371 1.00 73.97 N
ATOM 15 C2 C A 559 -10.318 96.600 120.789 1.00 74.19 C
ATOM 16 O2 C A 559 -11.497 96.987 120.796 1.00 75.26 O
ATOM 17 N3 C A 559 -9.962 95.418 120.233 1.00 73.87 N
ATOM 18 C4 C A 559 -8.683 95.033 120.244 1.00 73.01 C
ATOM 19 N4 C A 559 -8.378 93.864 119.672 1.00 71.84 N
ATOM 20 C5 C A 559 -7.660 95.832 120.837 1.00 72.37 C
ATOM 21 C6 C A 559 -8.025 96.999 121.383 1.00 72.51 C
ATOM 22 P G A 560 -8.975 98.210 126.705 1.00 81.79 P
ATOM 23 OP1 G A 560 -9.390 98.901 127.952 1.00 81.79 O
ATOM 24 OP2 G A 560 -7.624 97.600 126.619 1.00 81.61 O
ATOM 25 O5' G A 560 -10.061 97.094 126.364 1.00 83.09 O
TER
ATOM 1 O3' C B 573 -10.670 84.394 116.296 1.00 65.48 O
ATOM 2 P C B 574 -10.677 85.214 114.914 1.00 65.89 P
ATOM 3 OP1 C B 574 -11.701 84.612 114.021 1.00 64.80 O
ATOM 4 OP2 C B 574 -9.270 85.291 114.456 1.00 67.46 O
ATOM 5 O5' C B 574 -11.173 86.671 115.333 1.00 62.62 O
ATOM 6 C5' C B 574 -12.529 86.883 115.743 1.00 61.44 C
ATOM 7 C4' C B 574 -12.702 88.266 116.308 1.00 61.96 C
ATOM 8 O4' C B 574 -11.796 88.455 117.420 1.00 62.83 O
ATOM 9 C3' C B 574 -12.369 89.413 115.376 1.00 63.68 C
ATOM 10 O3' C B 574 -13.455 89.683 114.504 1.00 65.92 O
ATOM 11 C2' C B 574 -12.119 90.561 116.349 1.00 64.63 C
ATOM 12 O2' C B 574 -13.303 91.182 116.813 1.00 64.64 O
ATOM 13 C1' C B 574 -11.442 89.830 117.513 1.00 64.85 C
ATOM 14 N1 C B 574 -9.966 89.960 117.553 1.00 66.02 N
ATOM 15 C2 C B 574 -9.398 91.115 118.137 1.00 65.93 C
ATOM 16 O2 C B 574 -10.145 92.006 118.581 1.00 65.61 O
ATOM 17 N3 C B 574 -8.053 91.230 118.195 1.00 65.99 N
ATOM 18 C4 C B 574 -7.277 90.264 117.695 1.00 66.42 C
ATOM 19 N4 C B 574 -5.955 90.425 117.779 1.00 67.50 N
ATOM 20 C5 C B 574 -7.822 89.091 117.087 1.00 65.64 C
ATOM 21 C6 C B 574 -9.155 88.980 117.040 1.00 66.32 C
ATOM 22 P A B 575 -13.180 90.361 113.078 1.00 67.86 P
ATOM 23 OP1 A B 575 -12.644 91.728 113.317 1.00 67.93 O
ATOM 24 OP2 A B 575 -14.400 90.189 112.250 1.00 68.03 O
ATOM 25 O5' A B 575 -12.037 89.452 112.447 1.00 66.41 O
TER
Atoms:
C2: (-10.318,96.600,120.789)
OP1: (-3.929,98.840,124.159)
OP2: (-4.435,96.966,122.465)
C4: (-8.683,95.033,120.244)
O5': (-6.205,98.594,123.155)
C3': (-8.922,98.839,124.164)
C1': (-9.725,98.705,121.957)
O4': (-8.590,99.558,121.956)
C5': (-6.729,99.907,123.440)
P: (-4.644,98.363,122.942)
O2: (-11.497,96.987,120.796)
C4': (-8.232,99.899,123.321)
C2': (-10.218,98.607,123.402)
O2': (-11.175,99.620,123.638)
N1: (-9.331,97.409,121.371)
N3: (-9.962,95.418,120.233)
N4: (-8.378,93.864,119.672)
C6: (-8.025,96.999,121.383)
C5: (-7.660,95.832,120.837)
O3': (-9.124,99.268,125.506)
OP1: (-3.929,98.840,124.159)
OP2: (-4.435,96.966,122.465)
C4: (-8.683,95.033,120.244)
O5': (-6.205,98.594,123.155)
C3': (-8.922,98.839,124.164)
C1': (-9.725,98.705,121.957)
O4': (-8.590,99.558,121.956)
C5': (-6.729,99.907,123.440)
P: (-4.644,98.363,122.942)
O2: (-11.497,96.987,120.796)
C4': (-8.232,99.899,123.321)
C2': (-10.218,98.607,123.402)
O2': (-11.175,99.620,123.638)
N1: (-9.331,97.409,121.371)
N3: (-9.962,95.418,120.233)
N4: (-8.378,93.864,119.672)
C6: (-8.025,96.999,121.383)
C5: (-7.660,95.832,120.837)
O3': (-9.124,99.268,125.506)
C2: (-9.398,91.115,118.137)
OP1: (-11.701,84.612,114.021)
OP2: (-9.270,85.291,114.456)
C4: (-7.277,90.264,117.695)
O5': (-11.173,86.671,115.333)
C3': (-12.369,89.413,115.376)
C1': (-11.442,89.830,117.513)
O4': (-11.796,88.455,117.420)
C5': (-12.529,86.883,115.743)
P: (-10.677,85.214,114.914)
O2: (-10.145,92.006,118.581)
C4': (-12.702,88.266,116.308)
C2': (-12.119,90.561,116.349)
O2': (-13.303,91.182,116.813)
N1: (-9.966,89.960,117.553)
N3: (-8.053,91.230,118.195)
N4: (-5.955,90.425,117.779)
C6: (-9.155,88.980,117.040)
C5: (-7.822,89.091,117.087)
O3': (-13.455,89.683,114.504)
OP1: (-11.701,84.612,114.021)
OP2: (-9.270,85.291,114.456)
C4: (-7.277,90.264,117.695)
O5': (-11.173,86.671,115.333)
C3': (-12.369,89.413,115.376)
C1': (-11.442,89.830,117.513)
O4': (-11.796,88.455,117.420)
C5': (-12.529,86.883,115.743)
P: (-10.677,85.214,114.914)
O2: (-10.145,92.006,118.581)
C4': (-12.702,88.266,116.308)
C2': (-12.119,90.561,116.349)
O2': (-13.303,91.182,116.813)
N1: (-9.966,89.960,117.553)
N3: (-8.053,91.230,118.195)
N4: (-5.955,90.425,117.779)
C6: (-9.155,88.980,117.040)
C5: (-7.822,89.091,117.087)
O3': (-13.455,89.683,114.504)
Image (generated by PyMOL):