Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0219:0653
Extra
PDB:
ATOM 1 O3' C A 218 53.610 91.444 23.336 1.00 42.80 O
ATOM 2 P G A 219 53.068 92.554 22.311 1.00 44.73 P
ATOM 3 OP1 G A 219 52.250 91.828 21.318 1.00 47.18 O
ATOM 4 OP2 G A 219 54.202 93.396 21.858 1.00 44.53 O
ATOM 5 O5' G A 219 52.074 93.442 23.175 1.00 40.88 O
ATOM 6 C5' G A 219 50.861 92.883 23.690 1.00 40.61 C
ATOM 7 C4' G A 219 50.104 93.922 24.471 1.00 40.47 C
ATOM 8 O4' G A 219 50.835 94.257 25.676 1.00 39.31 O
ATOM 9 C3' G A 219 49.951 95.249 23.760 1.00 40.28 C
ATOM 10 O3' G A 219 48.886 95.230 22.822 1.00 43.02 O
ATOM 11 C2' G A 219 49.727 96.213 24.913 1.00 38.33 C
ATOM 12 O2' G A 219 48.411 96.175 25.412 1.00 35.93 O
ATOM 13 C1' G A 219 50.674 95.636 25.961 1.00 37.73 C
ATOM 14 N9 G A 219 51.993 96.262 25.970 1.00 37.65 N
ATOM 15 C8 G A 219 53.164 95.759 25.453 1.00 36.01 C
ATOM 16 N7 G A 219 54.194 96.527 25.676 1.00 35.75 N
ATOM 17 C5 G A 219 53.672 97.612 26.371 1.00 37.67 C
ATOM 18 C6 G A 219 54.313 98.771 26.903 1.00 36.78 C
ATOM 19 O6 G A 219 55.510 99.080 26.866 1.00 37.53 O
ATOM 20 N1 G A 219 53.402 99.614 27.531 1.00 34.57 N
ATOM 21 C2 G A 219 52.054 99.383 27.633 1.00 35.19 C
ATOM 22 N2 G A 219 51.338 100.325 28.262 1.00 36.55 N
ATOM 23 N3 G A 219 51.448 98.311 27.154 1.00 35.55 N
ATOM 24 C4 G A 219 52.311 97.472 26.542 1.00 37.39 C
ATOM 25 P A A 220 48.821 96.360 21.683 1.00 44.48 P
ATOM 26 OP1 A A 220 47.546 96.192 20.938 1.00 43.64 O
ATOM 27 OP2 A A 220 50.120 96.361 20.951 1.00 40.07 O
ATOM 28 O5' A A 220 48.691 97.695 22.538 1.00 43.90 O
TER
ATOM 1 O3' U B 652 40.378 97.767 34.402 1.00 40.22 O
ATOM 2 P A B 653 40.897 99.165 33.799 1.00 41.41 P
ATOM 3 OP1 A B 653 40.571 100.205 34.807 1.00 39.47 O
ATOM 4 OP2 A B 653 40.395 99.317 32.403 1.00 37.75 O
ATOM 5 O5' A B 653 42.484 98.977 33.753 1.00 39.49 O
ATOM 6 C5' A B 653 43.260 98.949 34.968 1.00 36.19 C
ATOM 7 C4' A B 653 44.739 99.102 34.670 1.00 37.64 C
ATOM 8 O4' A B 653 45.307 97.871 34.161 1.00 38.23 O
ATOM 9 C3' A B 653 45.115 100.146 33.635 1.00 37.51 C
ATOM 10 O3' A B 653 45.123 101.432 34.213 1.00 35.98 O
ATOM 11 C2' A B 653 46.509 99.698 33.217 1.00 38.74 C
ATOM 12 O2' A B 653 47.514 100.090 34.130 1.00 37.84 O
ATOM 13 C1' A B 653 46.359 98.175 33.258 1.00 39.35 C
ATOM 14 N9 A B 653 46.034 97.579 31.963 1.00 42.07 N
ATOM 15 C8 A B 653 44.804 97.162 31.515 1.00 43.01 C
ATOM 16 N7 A B 653 44.834 96.623 30.320 1.00 45.57 N
ATOM 17 C5 A B 653 46.170 96.697 29.953 1.00 43.94 C
ATOM 18 C6 A B 653 46.856 96.283 28.799 1.00 43.93 C
ATOM 19 N6 A B 653 46.268 95.671 27.773 1.00 42.72 N
ATOM 20 N1 A B 653 48.184 96.517 28.738 1.00 44.83 N
ATOM 21 C2 A B 653 48.774 97.123 29.779 1.00 44.56 C
ATOM 22 N3 A B 653 48.238 97.547 30.923 1.00 42.91 N
ATOM 23 C4 A B 653 46.918 97.300 30.947 1.00 42.88 C
ATOM 24 P A B 654 44.540 102.672 33.392 1.00 38.42 P
ATOM 25 OP1 A B 654 44.424 103.798 34.355 1.00 35.56 O
ATOM 26 OP2 A B 654 43.343 102.232 32.633 1.00 37.48 O
ATOM 27 O5' A B 654 45.704 103.000 32.354 1.00 38.42 O
TER
ATOM 2 P G A 219 53.068 92.554 22.311 1.00 44.73 P
ATOM 3 OP1 G A 219 52.250 91.828 21.318 1.00 47.18 O
ATOM 4 OP2 G A 219 54.202 93.396 21.858 1.00 44.53 O
ATOM 5 O5' G A 219 52.074 93.442 23.175 1.00 40.88 O
ATOM 6 C5' G A 219 50.861 92.883 23.690 1.00 40.61 C
ATOM 7 C4' G A 219 50.104 93.922 24.471 1.00 40.47 C
ATOM 8 O4' G A 219 50.835 94.257 25.676 1.00 39.31 O
ATOM 9 C3' G A 219 49.951 95.249 23.760 1.00 40.28 C
ATOM 10 O3' G A 219 48.886 95.230 22.822 1.00 43.02 O
ATOM 11 C2' G A 219 49.727 96.213 24.913 1.00 38.33 C
ATOM 12 O2' G A 219 48.411 96.175 25.412 1.00 35.93 O
ATOM 13 C1' G A 219 50.674 95.636 25.961 1.00 37.73 C
ATOM 14 N9 G A 219 51.993 96.262 25.970 1.00 37.65 N
ATOM 15 C8 G A 219 53.164 95.759 25.453 1.00 36.01 C
ATOM 16 N7 G A 219 54.194 96.527 25.676 1.00 35.75 N
ATOM 17 C5 G A 219 53.672 97.612 26.371 1.00 37.67 C
ATOM 18 C6 G A 219 54.313 98.771 26.903 1.00 36.78 C
ATOM 19 O6 G A 219 55.510 99.080 26.866 1.00 37.53 O
ATOM 20 N1 G A 219 53.402 99.614 27.531 1.00 34.57 N
ATOM 21 C2 G A 219 52.054 99.383 27.633 1.00 35.19 C
ATOM 22 N2 G A 219 51.338 100.325 28.262 1.00 36.55 N
ATOM 23 N3 G A 219 51.448 98.311 27.154 1.00 35.55 N
ATOM 24 C4 G A 219 52.311 97.472 26.542 1.00 37.39 C
ATOM 25 P A A 220 48.821 96.360 21.683 1.00 44.48 P
ATOM 26 OP1 A A 220 47.546 96.192 20.938 1.00 43.64 O
ATOM 27 OP2 A A 220 50.120 96.361 20.951 1.00 40.07 O
ATOM 28 O5' A A 220 48.691 97.695 22.538 1.00 43.90 O
TER
ATOM 1 O3' U B 652 40.378 97.767 34.402 1.00 40.22 O
ATOM 2 P A B 653 40.897 99.165 33.799 1.00 41.41 P
ATOM 3 OP1 A B 653 40.571 100.205 34.807 1.00 39.47 O
ATOM 4 OP2 A B 653 40.395 99.317 32.403 1.00 37.75 O
ATOM 5 O5' A B 653 42.484 98.977 33.753 1.00 39.49 O
ATOM 6 C5' A B 653 43.260 98.949 34.968 1.00 36.19 C
ATOM 7 C4' A B 653 44.739 99.102 34.670 1.00 37.64 C
ATOM 8 O4' A B 653 45.307 97.871 34.161 1.00 38.23 O
ATOM 9 C3' A B 653 45.115 100.146 33.635 1.00 37.51 C
ATOM 10 O3' A B 653 45.123 101.432 34.213 1.00 35.98 O
ATOM 11 C2' A B 653 46.509 99.698 33.217 1.00 38.74 C
ATOM 12 O2' A B 653 47.514 100.090 34.130 1.00 37.84 O
ATOM 13 C1' A B 653 46.359 98.175 33.258 1.00 39.35 C
ATOM 14 N9 A B 653 46.034 97.579 31.963 1.00 42.07 N
ATOM 15 C8 A B 653 44.804 97.162 31.515 1.00 43.01 C
ATOM 16 N7 A B 653 44.834 96.623 30.320 1.00 45.57 N
ATOM 17 C5 A B 653 46.170 96.697 29.953 1.00 43.94 C
ATOM 18 C6 A B 653 46.856 96.283 28.799 1.00 43.93 C
ATOM 19 N6 A B 653 46.268 95.671 27.773 1.00 42.72 N
ATOM 20 N1 A B 653 48.184 96.517 28.738 1.00 44.83 N
ATOM 21 C2 A B 653 48.774 97.123 29.779 1.00 44.56 C
ATOM 22 N3 A B 653 48.238 97.547 30.923 1.00 42.91 N
ATOM 23 C4 A B 653 46.918 97.300 30.947 1.00 42.88 C
ATOM 24 P A B 654 44.540 102.672 33.392 1.00 38.42 P
ATOM 25 OP1 A B 654 44.424 103.798 34.355 1.00 35.56 O
ATOM 26 OP2 A B 654 43.343 102.232 32.633 1.00 37.48 O
ATOM 27 O5' A B 654 45.704 103.000 32.354 1.00 38.42 O
TER
Atoms:
OP1: (52.250,91.828,21.318)
OP2: (54.202,93.396,21.858)
C3': (49.951,95.249,23.760)
C1': (50.674,95.636,25.961)
C5': (50.861,92.883,23.690)
O6: (55.510,99.080,26.866)
O4': (50.835,94.257,25.676)
C8: (53.164,95.759,25.453)
C2: (52.054,99.383,27.633)
C6: (54.313,98.771,26.903)
C5: (53.672,97.612,26.371)
C4: (52.311,97.472,26.542)
P: (53.068,92.554,22.311)
C4': (50.104,93.922,24.471)
C2': (49.727,96.213,24.913)
O2': (48.411,96.175,25.412)
N1: (53.402,99.614,27.531)
N2: (51.338,100.325,28.262)
N3: (51.448,98.311,27.154)
N7: (54.194,96.527,25.676)
N9: (51.993,96.262,25.970)
O5': (52.074,93.442,23.175)
O3': (48.886,95.230,22.822)
OP2: (54.202,93.396,21.858)
C3': (49.951,95.249,23.760)
C1': (50.674,95.636,25.961)
C5': (50.861,92.883,23.690)
O6: (55.510,99.080,26.866)
O4': (50.835,94.257,25.676)
C8: (53.164,95.759,25.453)
C2: (52.054,99.383,27.633)
C6: (54.313,98.771,26.903)
C5: (53.672,97.612,26.371)
C4: (52.311,97.472,26.542)
P: (53.068,92.554,22.311)
C4': (50.104,93.922,24.471)
C2': (49.727,96.213,24.913)
O2': (48.411,96.175,25.412)
N1: (53.402,99.614,27.531)
N2: (51.338,100.325,28.262)
N3: (51.448,98.311,27.154)
N7: (54.194,96.527,25.676)
N9: (51.993,96.262,25.970)
O5': (52.074,93.442,23.175)
O3': (48.886,95.230,22.822)
OP1: (40.571,100.205,34.807)
OP2: (40.395,99.317,32.403)
C3': (45.115,100.146,33.635)
C1': (46.359,98.175,33.258)
C5': (43.260,98.949,34.968)
O4': (45.307,97.871,34.161)
C8: (44.804,97.162,31.515)
O2': (47.514,100.090,34.130)
C6: (46.856,96.283,28.799)
C5: (46.170,96.697,29.953)
C4: (46.918,97.300,30.947)
P: (40.897,99.165,33.799)
C4': (44.739,99.102,34.670)
C2': (46.509,99.698,33.217)
C2: (48.774,97.123,29.779)
N1: (48.184,96.517,28.738)
N3: (48.238,97.547,30.923)
N6: (46.268,95.671,27.773)
N7: (44.834,96.623,30.320)
N9: (46.034,97.579,31.963)
O5': (42.484,98.977,33.753)
O3': (45.123,101.432,34.213)
OP2: (40.395,99.317,32.403)
C3': (45.115,100.146,33.635)
C1': (46.359,98.175,33.258)
C5': (43.260,98.949,34.968)
O4': (45.307,97.871,34.161)
C8: (44.804,97.162,31.515)
O2': (47.514,100.090,34.130)
C6: (46.856,96.283,28.799)
C5: (46.170,96.697,29.953)
C4: (46.918,97.300,30.947)
P: (40.897,99.165,33.799)
C4': (44.739,99.102,34.670)
C2': (46.509,99.698,33.217)
C2: (48.774,97.123,29.779)
N1: (48.184,96.517,28.738)
N3: (48.238,97.547,30.923)
N6: (46.268,95.671,27.773)
N7: (44.834,96.623,30.320)
N9: (46.034,97.579,31.963)
O5': (42.484,98.977,33.753)
O3': (45.123,101.432,34.213)
Image (generated by PyMOL):