Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0344:0346
Extra
PDB:
ATOM 1 O3' C A 343 53.578 126.153 17.998 1.00 61.43 O
ATOM 2 P C A 344 54.389 125.472 16.793 1.00 60.75 P
ATOM 3 OP1 C A 344 55.646 124.897 17.354 1.00 62.01 O
ATOM 4 OP2 C A 344 54.464 126.461 15.698 1.00 62.16 O
ATOM 5 O5' C A 344 53.464 124.261 16.330 1.00 61.44 O
ATOM 6 C5' C A 344 53.289 123.107 17.175 1.00 61.27 C
ATOM 7 C4' C A 344 52.214 122.203 16.621 1.00 60.78 C
ATOM 8 O4' C A 344 50.987 122.958 16.456 1.00 60.99 O
ATOM 9 C3' C A 344 52.476 121.618 15.246 1.00 61.06 C
ATOM 10 O3' C A 344 53.298 120.458 15.349 1.00 62.98 O
ATOM 11 C2' C A 344 51.066 121.285 14.773 1.00 61.15 C
ATOM 12 O2' C A 344 50.565 120.102 15.359 1.00 61.44 O
ATOM 13 C1' C A 344 50.271 122.463 15.338 1.00 61.52 C
ATOM 14 N1 C A 344 50.063 123.565 14.383 1.00 62.85 N
ATOM 15 C2 C A 344 48.927 123.540 13.550 1.00 63.79 C
ATOM 16 O2 C A 344 48.135 122.585 13.631 1.00 63.95 O
ATOM 17 N3 C A 344 48.725 124.556 12.680 1.00 63.97 N
ATOM 18 C4 C A 344 49.599 125.565 12.618 1.00 64.23 C
ATOM 19 N4 C A 344 49.356 126.553 11.752 1.00 64.86 N
ATOM 20 C5 C A 344 50.761 125.610 13.444 1.00 64.09 C
ATOM 21 C6 C A 344 50.952 124.602 14.302 1.00 63.04 C
ATOM 22 P A A 345 54.278 120.053 14.137 1.00 65.04 P
ATOM 23 OP1 A A 345 53.445 119.611 12.988 1.00 65.00 O
ATOM 24 OP2 A A 345 55.336 119.151 14.667 1.00 63.60 O
ATOM 25 O5' A A 345 54.963 121.423 13.723 1.00 65.21 O
TER
ATOM 1 O3' A B 345 56.770 125.039 12.542 1.00 71.26 O
ATOM 2 P G B 346 58.149 125.366 13.300 1.00 72.05 P
ATOM 3 OP1 G B 346 58.479 124.202 14.156 1.00 72.51 O
ATOM 4 OP2 G B 346 58.023 126.714 13.907 1.00 72.10 O
ATOM 5 O5' G B 346 59.237 125.413 12.133 1.00 73.72 O
ATOM 6 C5' G B 346 59.001 126.181 10.937 1.00 75.45 C
ATOM 7 C4' G B 346 58.568 125.272 9.808 1.00 76.42 C
ATOM 8 O4' G B 346 57.817 126.035 8.826 1.00 76.23 O
ATOM 9 C3' G B 346 59.659 124.542 9.028 1.00 76.69 C
ATOM 10 O3' G B 346 59.079 123.301 8.599 1.00 78.22 O
ATOM 11 C2' G B 346 59.872 125.491 7.850 1.00 76.73 C
ATOM 12 O2' G B 346 60.481 124.907 6.718 1.00 77.11 O
ATOM 13 C1' G B 346 58.426 125.898 7.561 1.00 76.39 C
ATOM 14 N9 G B 346 58.212 127.135 6.819 1.00 76.15 N
ATOM 15 C8 G B 346 59.105 128.158 6.602 1.00 77.26 C
ATOM 16 N7 G B 346 58.601 129.136 5.900 1.00 77.80 N
ATOM 17 C5 G B 346 57.299 128.734 5.637 1.00 77.46 C
ATOM 18 C6 G B 346 56.269 129.381 4.913 1.00 78.16 C
ATOM 19 O6 G B 346 56.304 130.477 4.337 1.00 79.80 O
ATOM 20 N1 G B 346 55.101 128.621 4.894 1.00 77.93 N
ATOM 21 C2 G B 346 54.946 127.395 5.496 1.00 76.67 C
ATOM 22 N2 G B 346 53.740 126.820 5.373 1.00 74.90 N
ATOM 23 N3 G B 346 55.903 126.780 6.170 1.00 76.05 N
ATOM 24 C4 G B 346 57.044 127.501 6.199 1.00 76.42 C
ATOM 25 P U B 347 59.982 122.165 7.900 1.00 79.22 P
ATOM 26 OP1 U B 347 61.294 122.036 8.597 1.00 79.47 O
ATOM 27 OP2 U B 347 59.950 122.430 6.436 1.00 80.04 O
ATOM 28 O5' U B 347 59.137 120.831 8.128 1.00 78.36 O
TER
ATOM 2 P C A 344 54.389 125.472 16.793 1.00 60.75 P
ATOM 3 OP1 C A 344 55.646 124.897 17.354 1.00 62.01 O
ATOM 4 OP2 C A 344 54.464 126.461 15.698 1.00 62.16 O
ATOM 5 O5' C A 344 53.464 124.261 16.330 1.00 61.44 O
ATOM 6 C5' C A 344 53.289 123.107 17.175 1.00 61.27 C
ATOM 7 C4' C A 344 52.214 122.203 16.621 1.00 60.78 C
ATOM 8 O4' C A 344 50.987 122.958 16.456 1.00 60.99 O
ATOM 9 C3' C A 344 52.476 121.618 15.246 1.00 61.06 C
ATOM 10 O3' C A 344 53.298 120.458 15.349 1.00 62.98 O
ATOM 11 C2' C A 344 51.066 121.285 14.773 1.00 61.15 C
ATOM 12 O2' C A 344 50.565 120.102 15.359 1.00 61.44 O
ATOM 13 C1' C A 344 50.271 122.463 15.338 1.00 61.52 C
ATOM 14 N1 C A 344 50.063 123.565 14.383 1.00 62.85 N
ATOM 15 C2 C A 344 48.927 123.540 13.550 1.00 63.79 C
ATOM 16 O2 C A 344 48.135 122.585 13.631 1.00 63.95 O
ATOM 17 N3 C A 344 48.725 124.556 12.680 1.00 63.97 N
ATOM 18 C4 C A 344 49.599 125.565 12.618 1.00 64.23 C
ATOM 19 N4 C A 344 49.356 126.553 11.752 1.00 64.86 N
ATOM 20 C5 C A 344 50.761 125.610 13.444 1.00 64.09 C
ATOM 21 C6 C A 344 50.952 124.602 14.302 1.00 63.04 C
ATOM 22 P A A 345 54.278 120.053 14.137 1.00 65.04 P
ATOM 23 OP1 A A 345 53.445 119.611 12.988 1.00 65.00 O
ATOM 24 OP2 A A 345 55.336 119.151 14.667 1.00 63.60 O
ATOM 25 O5' A A 345 54.963 121.423 13.723 1.00 65.21 O
TER
ATOM 1 O3' A B 345 56.770 125.039 12.542 1.00 71.26 O
ATOM 2 P G B 346 58.149 125.366 13.300 1.00 72.05 P
ATOM 3 OP1 G B 346 58.479 124.202 14.156 1.00 72.51 O
ATOM 4 OP2 G B 346 58.023 126.714 13.907 1.00 72.10 O
ATOM 5 O5' G B 346 59.237 125.413 12.133 1.00 73.72 O
ATOM 6 C5' G B 346 59.001 126.181 10.937 1.00 75.45 C
ATOM 7 C4' G B 346 58.568 125.272 9.808 1.00 76.42 C
ATOM 8 O4' G B 346 57.817 126.035 8.826 1.00 76.23 O
ATOM 9 C3' G B 346 59.659 124.542 9.028 1.00 76.69 C
ATOM 10 O3' G B 346 59.079 123.301 8.599 1.00 78.22 O
ATOM 11 C2' G B 346 59.872 125.491 7.850 1.00 76.73 C
ATOM 12 O2' G B 346 60.481 124.907 6.718 1.00 77.11 O
ATOM 13 C1' G B 346 58.426 125.898 7.561 1.00 76.39 C
ATOM 14 N9 G B 346 58.212 127.135 6.819 1.00 76.15 N
ATOM 15 C8 G B 346 59.105 128.158 6.602 1.00 77.26 C
ATOM 16 N7 G B 346 58.601 129.136 5.900 1.00 77.80 N
ATOM 17 C5 G B 346 57.299 128.734 5.637 1.00 77.46 C
ATOM 18 C6 G B 346 56.269 129.381 4.913 1.00 78.16 C
ATOM 19 O6 G B 346 56.304 130.477 4.337 1.00 79.80 O
ATOM 20 N1 G B 346 55.101 128.621 4.894 1.00 77.93 N
ATOM 21 C2 G B 346 54.946 127.395 5.496 1.00 76.67 C
ATOM 22 N2 G B 346 53.740 126.820 5.373 1.00 74.90 N
ATOM 23 N3 G B 346 55.903 126.780 6.170 1.00 76.05 N
ATOM 24 C4 G B 346 57.044 127.501 6.199 1.00 76.42 C
ATOM 25 P U B 347 59.982 122.165 7.900 1.00 79.22 P
ATOM 26 OP1 U B 347 61.294 122.036 8.597 1.00 79.47 O
ATOM 27 OP2 U B 347 59.950 122.430 6.436 1.00 80.04 O
ATOM 28 O5' U B 347 59.137 120.831 8.128 1.00 78.36 O
TER
Atoms:
C2: (48.927,123.540,13.550)
OP1: (55.646,124.897,17.354)
OP2: (54.464,126.461,15.698)
C4: (49.599,125.565,12.618)
O5': (53.464,124.261,16.330)
C3': (52.476,121.618,15.246)
C1': (50.271,122.463,15.338)
O4': (50.987,122.958,16.456)
C5': (53.289,123.107,17.175)
P: (54.389,125.472,16.793)
O2: (48.135,122.585,13.631)
C4': (52.214,122.203,16.621)
C2': (51.066,121.285,14.773)
O2': (50.565,120.102,15.359)
N1: (50.063,123.565,14.383)
N3: (48.725,124.556,12.680)
N4: (49.356,126.553,11.752)
C6: (50.952,124.602,14.302)
C5: (50.761,125.610,13.444)
O3': (53.298,120.458,15.349)
OP1: (55.646,124.897,17.354)
OP2: (54.464,126.461,15.698)
C4: (49.599,125.565,12.618)
O5': (53.464,124.261,16.330)
C3': (52.476,121.618,15.246)
C1': (50.271,122.463,15.338)
O4': (50.987,122.958,16.456)
C5': (53.289,123.107,17.175)
P: (54.389,125.472,16.793)
O2: (48.135,122.585,13.631)
C4': (52.214,122.203,16.621)
C2': (51.066,121.285,14.773)
O2': (50.565,120.102,15.359)
N1: (50.063,123.565,14.383)
N3: (48.725,124.556,12.680)
N4: (49.356,126.553,11.752)
C6: (50.952,124.602,14.302)
C5: (50.761,125.610,13.444)
O3': (53.298,120.458,15.349)
OP1: (58.479,124.202,14.156)
OP2: (58.023,126.714,13.907)
C3': (59.659,124.542,9.028)
C1': (58.426,125.898,7.561)
C5': (59.001,126.181,10.937)
O6: (56.304,130.477,4.337)
O4': (57.817,126.035,8.826)
C8: (59.105,128.158,6.602)
C2: (54.946,127.395,5.496)
C6: (56.269,129.381,4.913)
C5: (57.299,128.734,5.637)
C4: (57.044,127.501,6.199)
P: (58.149,125.366,13.300)
C4': (58.568,125.272,9.808)
C2': (59.872,125.491,7.850)
O2': (60.481,124.907,6.718)
N1: (55.101,128.621,4.894)
N2: (53.740,126.820,5.373)
N3: (55.903,126.780,6.170)
N7: (58.601,129.136,5.900)
N9: (58.212,127.135,6.819)
O5': (59.237,125.413,12.133)
O3': (59.079,123.301,8.599)
OP2: (58.023,126.714,13.907)
C3': (59.659,124.542,9.028)
C1': (58.426,125.898,7.561)
C5': (59.001,126.181,10.937)
O6: (56.304,130.477,4.337)
O4': (57.817,126.035,8.826)
C8: (59.105,128.158,6.602)
C2: (54.946,127.395,5.496)
C6: (56.269,129.381,4.913)
C5: (57.299,128.734,5.637)
C4: (57.044,127.501,6.199)
P: (58.149,125.366,13.300)
C4': (58.568,125.272,9.808)
C2': (59.872,125.491,7.850)
O2': (60.481,124.907,6.718)
N1: (55.101,128.621,4.894)
N2: (53.740,126.820,5.373)
N3: (55.903,126.780,6.170)
N7: (58.601,129.136,5.900)
N9: (58.212,127.135,6.819)
O5': (59.237,125.413,12.133)
O3': (59.079,123.301,8.599)
Image (generated by PyMOL):