Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12004:12049
Extra
PDB:
ATOM 1 O3' C A2003 -16.031 -22.069 88.707 1.00 47.15 O
ATOM 2 P C A2004 -15.934 -22.628 90.208 1.00 52.56 P
ATOM 3 OP1 C A2004 -16.339 -24.072 90.164 1.00 52.74 O
ATOM 4 OP2 C A2004 -16.696 -21.701 91.075 1.00 52.79 O
ATOM 5 O5' C A2004 -14.393 -22.507 90.531 1.00 52.22 O
ATOM 6 C5' C A2004 -13.446 -23.182 89.733 1.00 51.95 C
ATOM 7 C4' C A2004 -12.485 -23.952 90.571 1.00 51.87 C
ATOM 8 O4' C A2004 -11.604 -23.035 91.257 1.00 51.69 O
ATOM 9 C3' C A2004 -13.099 -24.805 91.661 1.00 52.19 C
ATOM 10 O3' C A2004 -12.208 -25.889 91.878 1.00 52.10 O
ATOM 11 C2' C A2004 -13.045 -23.869 92.862 1.00 52.26 C
ATOM 12 O2' C A2004 -13.214 -24.500 94.118 1.00 52.51 O
ATOM 13 C1' C A2004 -11.643 -23.302 92.644 1.00 51.88 C
ATOM 14 N1 C A2004 -11.319 -22.035 93.350 1.00 51.83 N
ATOM 15 C2 C A2004 -9.973 -21.718 93.466 1.00 51.53 C
ATOM 16 O2 C A2004 -9.057 -22.496 93.087 1.00 51.33 O
ATOM 17 N3 C A2004 -9.705 -20.564 94.072 1.00 51.50 N
ATOM 18 C4 C A2004 -10.653 -19.759 94.554 1.00 51.74 C
ATOM 19 N4 C A2004 -10.304 -18.626 95.166 1.00 51.71 N
ATOM 20 C5 C A2004 -12.013 -20.049 94.422 1.00 52.03 C
ATOM 21 C6 C A2004 -12.275 -21.185 93.797 1.00 52.06 C
ATOM 22 P A A2005 -12.556 -27.332 91.296 1.00 54.10 P
ATOM 23 OP1 A A2005 -14.015 -27.307 90.960 1.00 54.39 O
ATOM 24 OP2 A A2005 -12.078 -28.330 92.281 1.00 54.20 O
ATOM 25 O5' A A2005 -11.695 -27.442 89.973 1.00 53.77 O
TER
ATOM 1 O3' U B2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 2 P A B2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 3 OP1 A B2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 4 OP2 A B2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 5 O5' A B2049 -11.798 -16.173 96.361 1.00 53.11 O
ATOM 6 C5' A B2049 -10.992 -15.112 96.846 1.00 53.00 C
ATOM 7 C4' A B2049 -10.342 -14.352 95.721 1.00 52.67 C
ATOM 8 O4' A B2049 -9.860 -15.290 94.723 1.00 52.43 O
ATOM 9 C3' A B2049 -11.235 -13.382 94.961 1.00 52.76 C
ATOM 10 O3' A B2049 -11.215 -12.092 95.543 1.00 52.84 O
ATOM 11 C2' A B2049 -10.655 -13.421 93.552 1.00 52.43 C
ATOM 12 O2' A B2049 -9.505 -12.613 93.477 1.00 52.17 O
ATOM 13 C1' A B2049 -10.197 -14.862 93.434 1.00 52.32 C
ATOM 14 N9 A B2049 -11.240 -15.767 92.930 1.00 52.49 N
ATOM 15 C8 A B2049 -12.604 -15.771 93.153 1.00 52.83 C
ATOM 16 N7 A B2049 -13.258 -16.802 92.620 1.00 52.93 N
ATOM 17 C5 A B2049 -12.244 -17.555 92.023 1.00 52.64 C
ATOM 18 C6 A B2049 -12.286 -18.764 91.304 1.00 52.60 C
ATOM 19 N6 A B2049 -13.382 -19.463 91.037 1.00 52.85 N
ATOM 20 N1 A B2049 -11.129 -19.240 90.859 1.00 52.31 N
ATOM 21 C2 A B2049 -10.034 -18.515 91.171 1.00 52.08 C
ATOM 22 N3 A B2049 -9.821 -17.369 91.832 1.00 52.08 N
ATOM 23 C4 A B2049 -11.006 -16.932 92.239 1.00 52.38 C
ATOM 24 P A B2050 -12.372 -10.991 95.254 1.00 43.34 P
ATOM 25 OP1 A B2050 -13.441 -11.169 96.276 1.00 43.74 O
ATOM 26 OP2 A B2050 -12.745 -11.057 93.817 1.00 43.22 O
ATOM 27 O5' A B2050 -11.604 -9.633 95.508 1.00 43.23 O
TER
ATOM 2 P C A2004 -15.934 -22.628 90.208 1.00 52.56 P
ATOM 3 OP1 C A2004 -16.339 -24.072 90.164 1.00 52.74 O
ATOM 4 OP2 C A2004 -16.696 -21.701 91.075 1.00 52.79 O
ATOM 5 O5' C A2004 -14.393 -22.507 90.531 1.00 52.22 O
ATOM 6 C5' C A2004 -13.446 -23.182 89.733 1.00 51.95 C
ATOM 7 C4' C A2004 -12.485 -23.952 90.571 1.00 51.87 C
ATOM 8 O4' C A2004 -11.604 -23.035 91.257 1.00 51.69 O
ATOM 9 C3' C A2004 -13.099 -24.805 91.661 1.00 52.19 C
ATOM 10 O3' C A2004 -12.208 -25.889 91.878 1.00 52.10 O
ATOM 11 C2' C A2004 -13.045 -23.869 92.862 1.00 52.26 C
ATOM 12 O2' C A2004 -13.214 -24.500 94.118 1.00 52.51 O
ATOM 13 C1' C A2004 -11.643 -23.302 92.644 1.00 51.88 C
ATOM 14 N1 C A2004 -11.319 -22.035 93.350 1.00 51.83 N
ATOM 15 C2 C A2004 -9.973 -21.718 93.466 1.00 51.53 C
ATOM 16 O2 C A2004 -9.057 -22.496 93.087 1.00 51.33 O
ATOM 17 N3 C A2004 -9.705 -20.564 94.072 1.00 51.50 N
ATOM 18 C4 C A2004 -10.653 -19.759 94.554 1.00 51.74 C
ATOM 19 N4 C A2004 -10.304 -18.626 95.166 1.00 51.71 N
ATOM 20 C5 C A2004 -12.013 -20.049 94.422 1.00 52.03 C
ATOM 21 C6 C A2004 -12.275 -21.185 93.797 1.00 52.06 C
ATOM 22 P A A2005 -12.556 -27.332 91.296 1.00 54.10 P
ATOM 23 OP1 A A2005 -14.015 -27.307 90.960 1.00 54.39 O
ATOM 24 OP2 A A2005 -12.078 -28.330 92.281 1.00 54.20 O
ATOM 25 O5' A A2005 -11.695 -27.442 89.973 1.00 53.77 O
TER
ATOM 1 O3' U B2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 2 P A B2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 3 OP1 A B2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 4 OP2 A B2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 5 O5' A B2049 -11.798 -16.173 96.361 1.00 53.11 O
ATOM 6 C5' A B2049 -10.992 -15.112 96.846 1.00 53.00 C
ATOM 7 C4' A B2049 -10.342 -14.352 95.721 1.00 52.67 C
ATOM 8 O4' A B2049 -9.860 -15.290 94.723 1.00 52.43 O
ATOM 9 C3' A B2049 -11.235 -13.382 94.961 1.00 52.76 C
ATOM 10 O3' A B2049 -11.215 -12.092 95.543 1.00 52.84 O
ATOM 11 C2' A B2049 -10.655 -13.421 93.552 1.00 52.43 C
ATOM 12 O2' A B2049 -9.505 -12.613 93.477 1.00 52.17 O
ATOM 13 C1' A B2049 -10.197 -14.862 93.434 1.00 52.32 C
ATOM 14 N9 A B2049 -11.240 -15.767 92.930 1.00 52.49 N
ATOM 15 C8 A B2049 -12.604 -15.771 93.153 1.00 52.83 C
ATOM 16 N7 A B2049 -13.258 -16.802 92.620 1.00 52.93 N
ATOM 17 C5 A B2049 -12.244 -17.555 92.023 1.00 52.64 C
ATOM 18 C6 A B2049 -12.286 -18.764 91.304 1.00 52.60 C
ATOM 19 N6 A B2049 -13.382 -19.463 91.037 1.00 52.85 N
ATOM 20 N1 A B2049 -11.129 -19.240 90.859 1.00 52.31 N
ATOM 21 C2 A B2049 -10.034 -18.515 91.171 1.00 52.08 C
ATOM 22 N3 A B2049 -9.821 -17.369 91.832 1.00 52.08 N
ATOM 23 C4 A B2049 -11.006 -16.932 92.239 1.00 52.38 C
ATOM 24 P A B2050 -12.372 -10.991 95.254 1.00 43.34 P
ATOM 25 OP1 A B2050 -13.441 -11.169 96.276 1.00 43.74 O
ATOM 26 OP2 A B2050 -12.745 -11.057 93.817 1.00 43.22 O
ATOM 27 O5' A B2050 -11.604 -9.633 95.508 1.00 43.23 O
TER
Atoms:
C2: (-9.973,-21.718,93.466)
OP1: (-16.339,-24.072,90.164)
OP2: (-16.696,-21.701,91.075)
C4: (-10.653,-19.759,94.554)
O5': (-14.393,-22.507,90.531)
C3': (-13.099,-24.805,91.661)
C1': (-11.643,-23.302,92.644)
O4': (-11.604,-23.035,91.257)
C5': (-13.446,-23.182,89.733)
P: (-15.934,-22.628,90.208)
O2: (-9.057,-22.496,93.087)
C4': (-12.485,-23.952,90.571)
C2': (-13.045,-23.869,92.862)
O2': (-13.214,-24.500,94.118)
N1: (-11.319,-22.035,93.350)
N3: (-9.705,-20.564,94.072)
N4: (-10.304,-18.626,95.166)
C6: (-12.275,-21.185,93.797)
C5: (-12.013,-20.049,94.422)
O3': (-12.208,-25.889,91.878)
OP1: (-16.339,-24.072,90.164)
OP2: (-16.696,-21.701,91.075)
C4: (-10.653,-19.759,94.554)
O5': (-14.393,-22.507,90.531)
C3': (-13.099,-24.805,91.661)
C1': (-11.643,-23.302,92.644)
O4': (-11.604,-23.035,91.257)
C5': (-13.446,-23.182,89.733)
P: (-15.934,-22.628,90.208)
O2: (-9.057,-22.496,93.087)
C4': (-12.485,-23.952,90.571)
C2': (-13.045,-23.869,92.862)
O2': (-13.214,-24.500,94.118)
N1: (-11.319,-22.035,93.350)
N3: (-9.705,-20.564,94.072)
N4: (-10.304,-18.626,95.166)
C6: (-12.275,-21.185,93.797)
C5: (-12.013,-20.049,94.422)
O3': (-12.208,-25.889,91.878)
OP1: (-13.877,-15.215,97.360)
OP2: (-13.944,-17.495,96.223)
C3': (-11.235,-13.382,94.961)
C1': (-10.197,-14.862,93.434)
C5': (-10.992,-15.112,96.846)
O4': (-9.860,-15.290,94.723)
C8: (-12.604,-15.771,93.153)
O2': (-9.505,-12.613,93.477)
C6: (-12.286,-18.764,91.304)
C5: (-12.244,-17.555,92.023)
C4: (-11.006,-16.932,92.239)
P: (-13.216,-16.487,97.025)
C4': (-10.342,-14.352,95.721)
C2': (-10.655,-13.421,93.552)
C2: (-10.034,-18.515,91.171)
N1: (-11.129,-19.240,90.859)
N3: (-9.821,-17.369,91.832)
N6: (-13.382,-19.463,91.037)
N7: (-13.258,-16.802,92.620)
N9: (-11.240,-15.767,92.930)
O5': (-11.798,-16.173,96.361)
O3': (-11.215,-12.092,95.543)
OP2: (-13.944,-17.495,96.223)
C3': (-11.235,-13.382,94.961)
C1': (-10.197,-14.862,93.434)
C5': (-10.992,-15.112,96.846)
O4': (-9.860,-15.290,94.723)
C8: (-12.604,-15.771,93.153)
O2': (-9.505,-12.613,93.477)
C6: (-12.286,-18.764,91.304)
C5: (-12.244,-17.555,92.023)
C4: (-11.006,-16.932,92.239)
P: (-13.216,-16.487,97.025)
C4': (-10.342,-14.352,95.721)
C2': (-10.655,-13.421,93.552)
C2: (-10.034,-18.515,91.171)
N1: (-11.129,-19.240,90.859)
N3: (-9.821,-17.369,91.832)
N6: (-13.382,-19.463,91.037)
N7: (-13.258,-16.802,92.620)
N9: (-11.240,-15.767,92.930)
O5': (-11.798,-16.173,96.361)
O3': (-11.215,-12.092,95.543)
Image (generated by PyMOL):