Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0344:0346
Extra
PDB:
ATOM 1 O3' C A 343 53.911 126.598 18.172 1.00 73.76 O
ATOM 2 P C A 344 54.709 125.838 16.998 1.00 73.54 P
ATOM 3 OP1 C A 344 55.871 125.137 17.613 1.00 73.63 O
ATOM 4 OP2 C A 344 54.939 126.811 15.901 1.00 74.42 O
ATOM 5 O5' C A 344 53.705 124.704 16.501 1.00 74.95 O
ATOM 6 C5' C A 344 53.417 123.567 17.337 1.00 76.53 C
ATOM 7 C4' C A 344 52.371 122.692 16.696 1.00 77.70 C
ATOM 8 O4' C A 344 51.163 123.460 16.475 1.00 78.21 O
ATOM 9 C3' C A 344 52.727 122.134 15.330 1.00 79.02 C
ATOM 10 O3' C A 344 53.509 120.951 15.496 1.00 82.47 O
ATOM 11 C2' C A 344 51.355 121.847 14.726 1.00 79.00 C
ATOM 12 O2' C A 344 50.801 120.625 15.159 1.00 78.59 O
ATOM 13 C1' C A 344 50.514 122.988 15.309 1.00 79.61 C
ATOM 14 N1 C A 344 50.278 124.124 14.403 1.00 81.01 N
ATOM 15 C2 C A 344 49.058 124.188 13.707 1.00 81.39 C
ATOM 16 O2 C A 344 48.218 123.287 13.870 1.00 81.03 O
ATOM 17 N3 C A 344 48.827 125.230 12.876 1.00 82.32 N
ATOM 18 C4 C A 344 49.753 126.185 12.726 1.00 82.65 C
ATOM 19 N4 C A 344 49.479 127.195 11.892 1.00 82.41 N
ATOM 20 C5 C A 344 51.000 126.146 13.423 1.00 81.73 C
ATOM 21 C6 C A 344 51.219 125.107 14.240 1.00 81.49 C
ATOM 22 P A A 345 54.531 120.481 14.342 1.00 84.50 P
ATOM 23 OP1 A A 345 53.742 120.183 13.111 1.00 84.55 O
ATOM 24 OP2 A A 345 55.435 119.443 14.912 1.00 83.34 O
ATOM 25 O5' A A 345 55.409 121.769 14.047 1.00 84.33 O
TER
ATOM 1 O3' A B 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 2 P G B 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 3 OP1 G B 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 4 OP2 G B 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 5 O5' G B 346 59.488 125.693 12.155 1.00 92.04 O
ATOM 6 C5' G B 346 59.203 126.435 10.954 1.00 93.42 C
ATOM 7 C4' G B 346 58.798 125.496 9.836 1.00 94.14 C
ATOM 8 O4' G B 346 58.008 126.231 8.859 1.00 93.46 O
ATOM 9 C3' G B 346 59.924 124.828 9.049 1.00 94.24 C
ATOM 10 O3' G B 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 11 C2' G B 346 60.107 125.813 7.895 1.00 93.52 C
ATOM 12 O2' G B 346 60.746 125.276 6.756 1.00 93.78 O
ATOM 13 C1' G B 346 58.649 126.178 7.601 1.00 92.70 C
ATOM 14 N9 G B 346 58.409 127.446 6.919 1.00 90.84 N
ATOM 15 C8 G B 346 59.278 128.503 6.770 1.00 90.43 C
ATOM 16 N7 G B 346 58.759 129.504 6.111 1.00 90.18 N
ATOM 17 C5 G B 346 57.470 129.083 5.806 1.00 90.10 C
ATOM 18 C6 G B 346 56.431 129.746 5.102 1.00 90.31 C
ATOM 19 O6 G B 346 56.445 130.873 4.592 1.00 91.59 O
ATOM 20 N1 G B 346 55.283 128.959 5.022 1.00 89.88 N
ATOM 21 C2 G B 346 55.150 127.700 5.554 1.00 89.28 C
ATOM 22 N2 G B 346 53.957 127.110 5.381 1.00 87.93 N
ATOM 23 N3 G B 346 56.113 127.069 6.209 1.00 89.50 N
ATOM 24 C4 G B 346 57.239 127.816 6.296 1.00 90.19 C
ATOM 25 P U B 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 26 OP1 U B 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 27 OP2 U B 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 28 O5' U B 347 59.586 121.068 8.210 1.00 96.15 O
TER
ATOM 2 P C A 344 54.709 125.838 16.998 1.00 73.54 P
ATOM 3 OP1 C A 344 55.871 125.137 17.613 1.00 73.63 O
ATOM 4 OP2 C A 344 54.939 126.811 15.901 1.00 74.42 O
ATOM 5 O5' C A 344 53.705 124.704 16.501 1.00 74.95 O
ATOM 6 C5' C A 344 53.417 123.567 17.337 1.00 76.53 C
ATOM 7 C4' C A 344 52.371 122.692 16.696 1.00 77.70 C
ATOM 8 O4' C A 344 51.163 123.460 16.475 1.00 78.21 O
ATOM 9 C3' C A 344 52.727 122.134 15.330 1.00 79.02 C
ATOM 10 O3' C A 344 53.509 120.951 15.496 1.00 82.47 O
ATOM 11 C2' C A 344 51.355 121.847 14.726 1.00 79.00 C
ATOM 12 O2' C A 344 50.801 120.625 15.159 1.00 78.59 O
ATOM 13 C1' C A 344 50.514 122.988 15.309 1.00 79.61 C
ATOM 14 N1 C A 344 50.278 124.124 14.403 1.00 81.01 N
ATOM 15 C2 C A 344 49.058 124.188 13.707 1.00 81.39 C
ATOM 16 O2 C A 344 48.218 123.287 13.870 1.00 81.03 O
ATOM 17 N3 C A 344 48.827 125.230 12.876 1.00 82.32 N
ATOM 18 C4 C A 344 49.753 126.185 12.726 1.00 82.65 C
ATOM 19 N4 C A 344 49.479 127.195 11.892 1.00 82.41 N
ATOM 20 C5 C A 344 51.000 126.146 13.423 1.00 81.73 C
ATOM 21 C6 C A 344 51.219 125.107 14.240 1.00 81.49 C
ATOM 22 P A A 345 54.531 120.481 14.342 1.00 84.50 P
ATOM 23 OP1 A A 345 53.742 120.183 13.111 1.00 84.55 O
ATOM 24 OP2 A A 345 55.435 119.443 14.912 1.00 83.34 O
ATOM 25 O5' A A 345 55.409 121.769 14.047 1.00 84.33 O
TER
ATOM 1 O3' A B 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 2 P G B 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 3 OP1 G B 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 4 OP2 G B 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 5 O5' G B 346 59.488 125.693 12.155 1.00 92.04 O
ATOM 6 C5' G B 346 59.203 126.435 10.954 1.00 93.42 C
ATOM 7 C4' G B 346 58.798 125.496 9.836 1.00 94.14 C
ATOM 8 O4' G B 346 58.008 126.231 8.859 1.00 93.46 O
ATOM 9 C3' G B 346 59.924 124.828 9.049 1.00 94.24 C
ATOM 10 O3' G B 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 11 C2' G B 346 60.107 125.813 7.895 1.00 93.52 C
ATOM 12 O2' G B 346 60.746 125.276 6.756 1.00 93.78 O
ATOM 13 C1' G B 346 58.649 126.178 7.601 1.00 92.70 C
ATOM 14 N9 G B 346 58.409 127.446 6.919 1.00 90.84 N
ATOM 15 C8 G B 346 59.278 128.503 6.770 1.00 90.43 C
ATOM 16 N7 G B 346 58.759 129.504 6.111 1.00 90.18 N
ATOM 17 C5 G B 346 57.470 129.083 5.806 1.00 90.10 C
ATOM 18 C6 G B 346 56.431 129.746 5.102 1.00 90.31 C
ATOM 19 O6 G B 346 56.445 130.873 4.592 1.00 91.59 O
ATOM 20 N1 G B 346 55.283 128.959 5.022 1.00 89.88 N
ATOM 21 C2 G B 346 55.150 127.700 5.554 1.00 89.28 C
ATOM 22 N2 G B 346 53.957 127.110 5.381 1.00 87.93 N
ATOM 23 N3 G B 346 56.113 127.069 6.209 1.00 89.50 N
ATOM 24 C4 G B 346 57.239 127.816 6.296 1.00 90.19 C
ATOM 25 P U B 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 26 OP1 U B 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 27 OP2 U B 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 28 O5' U B 347 59.586 121.068 8.210 1.00 96.15 O
TER
Atoms:
C2: (49.058,124.188,13.707)
OP1: (55.871,125.137,17.613)
OP2: (54.939,126.811,15.901)
C4: (49.753,126.185,12.726)
O5': (53.705,124.704,16.501)
C3': (52.727,122.134,15.330)
C1': (50.514,122.988,15.309)
O4': (51.163,123.460,16.475)
C5': (53.417,123.567,17.337)
P: (54.709,125.838,16.998)
O2: (48.218,123.287,13.870)
C4': (52.371,122.692,16.696)
C2': (51.355,121.847,14.726)
O2': (50.801,120.625,15.159)
N1: (50.278,124.124,14.403)
N3: (48.827,125.230,12.876)
N4: (49.479,127.195,11.892)
C6: (51.219,125.107,14.240)
C5: (51.000,126.146,13.423)
O3': (53.509,120.951,15.496)
OP1: (55.871,125.137,17.613)
OP2: (54.939,126.811,15.901)
C4: (49.753,126.185,12.726)
O5': (53.705,124.704,16.501)
C3': (52.727,122.134,15.330)
C1': (50.514,122.988,15.309)
O4': (51.163,123.460,16.475)
C5': (53.417,123.567,17.337)
P: (54.709,125.838,16.998)
O2: (48.218,123.287,13.870)
C4': (52.371,122.692,16.696)
C2': (51.355,121.847,14.726)
O2': (50.801,120.625,15.159)
N1: (50.278,124.124,14.403)
N3: (48.827,125.230,12.876)
N4: (49.479,127.195,11.892)
C6: (51.219,125.107,14.240)
C5: (51.000,126.146,13.423)
O3': (53.509,120.951,15.496)
OP1: (58.807,124.564,14.264)
OP2: (58.342,127.063,13.913)
C3': (59.924,124.828,9.049)
C1': (58.649,126.178,7.601)
C5': (59.203,126.435,10.954)
O6: (56.445,130.873,4.592)
O4': (58.008,126.231,8.859)
C8: (59.278,128.503,6.770)
C2: (55.150,127.700,5.554)
C6: (56.431,129.746,5.102)
C5: (57.470,129.083,5.806)
C4: (57.239,127.816,6.296)
P: (58.449,125.686,13.365)
C4': (58.798,125.496,9.836)
C2': (60.107,125.813,7.895)
O2': (60.746,125.276,6.756)
N1: (55.283,128.959,5.022)
N2: (53.957,127.110,5.381)
N3: (56.113,127.069,6.209)
N7: (58.759,129.504,6.111)
N9: (58.409,127.446,6.919)
O5': (59.488,125.693,12.155)
O3': (59.426,123.559,8.583)
OP2: (58.342,127.063,13.913)
C3': (59.924,124.828,9.049)
C1': (58.649,126.178,7.601)
C5': (59.203,126.435,10.954)
O6: (56.445,130.873,4.592)
O4': (58.008,126.231,8.859)
C8: (59.278,128.503,6.770)
C2: (55.150,127.700,5.554)
C6: (56.431,129.746,5.102)
C5: (57.470,129.083,5.806)
C4: (57.239,127.816,6.296)
P: (58.449,125.686,13.365)
C4': (58.798,125.496,9.836)
C2': (60.107,125.813,7.895)
O2': (60.746,125.276,6.756)
N1: (55.283,128.959,5.022)
N2: (53.957,127.110,5.381)
N3: (56.113,127.069,6.209)
N7: (58.759,129.504,6.111)
N9: (58.409,127.446,6.919)
O5': (59.488,125.693,12.155)
O3': (59.426,123.559,8.583)
Image (generated by PyMOL):