Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:A62:B6
Extra
PDB:
ATOM 1 O3' G A 61 -19.913 -45.597 6.182 1.00 76.49 O
ATOM 2 P A A 62 -18.426 -46.159 6.023 1.00 75.66 P
ATOM 3 OP1 A A 62 -18.180 -46.461 4.595 1.00 76.87 O
ATOM 4 OP2 A A 62 -18.254 -47.207 7.059 1.00 75.41 O
ATOM 5 O5' A A 62 -17.514 -44.916 6.419 1.00 72.75 O
ATOM 6 C5' A A 62 -17.770 -43.632 5.878 1.00 70.25 C
ATOM 7 C4' A A 62 -17.499 -42.622 6.968 1.00 67.19 C
ATOM 8 O4' A A 62 -18.555 -42.692 7.955 1.00 66.05 O
ATOM 9 C3' A A 62 -16.271 -42.907 7.817 1.00 65.52 C
ATOM 10 O3' A A 62 -15.056 -42.591 7.146 1.00 64.75 O
ATOM 11 C2' A A 62 -16.559 -41.999 9.002 1.00 63.88 C
ATOM 12 O2' A A 62 -16.358 -40.636 8.682 1.00 63.57 O
ATOM 13 C1' A A 62 -18.043 -42.287 9.214 1.00 63.92 C
ATOM 14 N9 A A 62 -18.332 -43.301 10.234 1.00 62.70 N
ATOM 15 C8 A A 62 -18.547 -44.638 10.040 1.00 62.94 C
ATOM 16 N7 A A 62 -18.786 -45.304 11.147 1.00 62.28 N
ATOM 17 C5 A A 62 -18.727 -44.341 12.139 1.00 61.05 C
ATOM 18 C6 A A 62 -18.893 -44.400 13.543 1.00 60.11 C
ATOM 19 N6 A A 62 -19.160 -45.526 14.209 1.00 60.28 N
ATOM 20 N1 A A 62 -18.771 -43.253 14.247 1.00 59.11 N
ATOM 21 C2 A A 62 -18.498 -42.119 13.585 1.00 59.28 C
ATOM 22 N3 A A 62 -18.322 -41.941 12.274 1.00 60.09 N
ATOM 23 C4 A A 62 -18.449 -43.099 11.596 1.00 61.23 C
ATOM 24 P A A 63 -13.692 -43.305 7.604 1.00 63.99 P
ATOM 25 OP1 A A 63 -12.697 -43.058 6.533 1.00 64.71 O
ATOM 26 OP2 A A 63 -13.973 -44.697 8.034 1.00 63.74 O
ATOM 27 O5' A A 63 -13.289 -42.478 8.916 1.00 61.38 O
TER
ATOM 1 O3' U B 5 -24.539 -44.377 19.866 1.00 61.47 O
ATOM 2 P G B 6 -23.484 -44.270 21.068 1.00 61.96 P
ATOM 3 OP1 G B 6 -23.584 -45.505 21.877 1.00 62.49 O
ATOM 4 OP2 G B 6 -23.638 -42.952 21.724 1.00 61.82 O
ATOM 5 O5' G B 6 -22.072 -44.269 20.315 1.00 61.47 O
ATOM 6 C5' G B 6 -21.600 -45.429 19.631 1.00 60.27 C
ATOM 7 C4' G B 6 -20.398 -45.083 18.777 1.00 59.42 C
ATOM 8 O4' G B 6 -20.746 -44.043 17.829 1.00 59.71 O
ATOM 9 C3' G B 6 -19.224 -44.482 19.526 1.00 59.05 C
ATOM 10 O3' G B 6 -18.459 -45.488 20.159 1.00 58.76 O
ATOM 11 C2' G B 6 -18.469 -43.818 18.382 1.00 59.02 C
ATOM 12 O2' G B 6 -17.765 -44.753 17.589 1.00 59.24 O
ATOM 13 C1' G B 6 -19.626 -43.206 17.598 1.00 59.15 C
ATOM 14 N9 G B 6 -19.934 -41.846 18.038 1.00 58.93 N
ATOM 15 C8 G B 6 -20.963 -41.457 18.864 1.00 59.00 C
ATOM 16 N7 G B 6 -20.991 -40.176 19.099 1.00 59.25 N
ATOM 17 C5 G B 6 -19.907 -39.675 18.388 1.00 58.93 C
ATOM 18 C6 G B 6 -19.430 -38.344 18.260 1.00 58.79 C
ATOM 19 O6 G B 6 -19.893 -37.318 18.770 1.00 59.47 O
ATOM 20 N1 G B 6 -18.303 -38.252 17.444 1.00 58.30 N
ATOM 21 C2 G B 6 -17.708 -39.331 16.832 1.00 58.48 C
ATOM 22 N2 G B 6 -16.632 -39.064 16.082 1.00 57.94 N
ATOM 23 N3 G B 6 -18.145 -40.586 16.941 1.00 58.67 N
ATOM 24 C4 G B 6 -19.246 -40.690 17.731 1.00 58.76 C
ATOM 25 P G B 7 -17.868 -45.226 21.622 1.00 58.30 P
ATOM 26 OP1 G B 7 -16.993 -46.371 21.972 1.00 58.01 O
ATOM 27 OP2 G B 7 -18.993 -44.862 22.511 1.00 58.50 O
ATOM 28 O5' G B 7 -16.979 -43.918 21.412 1.00 58.11 O
TER
ATOM 2 P A A 62 -18.426 -46.159 6.023 1.00 75.66 P
ATOM 3 OP1 A A 62 -18.180 -46.461 4.595 1.00 76.87 O
ATOM 4 OP2 A A 62 -18.254 -47.207 7.059 1.00 75.41 O
ATOM 5 O5' A A 62 -17.514 -44.916 6.419 1.00 72.75 O
ATOM 6 C5' A A 62 -17.770 -43.632 5.878 1.00 70.25 C
ATOM 7 C4' A A 62 -17.499 -42.622 6.968 1.00 67.19 C
ATOM 8 O4' A A 62 -18.555 -42.692 7.955 1.00 66.05 O
ATOM 9 C3' A A 62 -16.271 -42.907 7.817 1.00 65.52 C
ATOM 10 O3' A A 62 -15.056 -42.591 7.146 1.00 64.75 O
ATOM 11 C2' A A 62 -16.559 -41.999 9.002 1.00 63.88 C
ATOM 12 O2' A A 62 -16.358 -40.636 8.682 1.00 63.57 O
ATOM 13 C1' A A 62 -18.043 -42.287 9.214 1.00 63.92 C
ATOM 14 N9 A A 62 -18.332 -43.301 10.234 1.00 62.70 N
ATOM 15 C8 A A 62 -18.547 -44.638 10.040 1.00 62.94 C
ATOM 16 N7 A A 62 -18.786 -45.304 11.147 1.00 62.28 N
ATOM 17 C5 A A 62 -18.727 -44.341 12.139 1.00 61.05 C
ATOM 18 C6 A A 62 -18.893 -44.400 13.543 1.00 60.11 C
ATOM 19 N6 A A 62 -19.160 -45.526 14.209 1.00 60.28 N
ATOM 20 N1 A A 62 -18.771 -43.253 14.247 1.00 59.11 N
ATOM 21 C2 A A 62 -18.498 -42.119 13.585 1.00 59.28 C
ATOM 22 N3 A A 62 -18.322 -41.941 12.274 1.00 60.09 N
ATOM 23 C4 A A 62 -18.449 -43.099 11.596 1.00 61.23 C
ATOM 24 P A A 63 -13.692 -43.305 7.604 1.00 63.99 P
ATOM 25 OP1 A A 63 -12.697 -43.058 6.533 1.00 64.71 O
ATOM 26 OP2 A A 63 -13.973 -44.697 8.034 1.00 63.74 O
ATOM 27 O5' A A 63 -13.289 -42.478 8.916 1.00 61.38 O
TER
ATOM 1 O3' U B 5 -24.539 -44.377 19.866 1.00 61.47 O
ATOM 2 P G B 6 -23.484 -44.270 21.068 1.00 61.96 P
ATOM 3 OP1 G B 6 -23.584 -45.505 21.877 1.00 62.49 O
ATOM 4 OP2 G B 6 -23.638 -42.952 21.724 1.00 61.82 O
ATOM 5 O5' G B 6 -22.072 -44.269 20.315 1.00 61.47 O
ATOM 6 C5' G B 6 -21.600 -45.429 19.631 1.00 60.27 C
ATOM 7 C4' G B 6 -20.398 -45.083 18.777 1.00 59.42 C
ATOM 8 O4' G B 6 -20.746 -44.043 17.829 1.00 59.71 O
ATOM 9 C3' G B 6 -19.224 -44.482 19.526 1.00 59.05 C
ATOM 10 O3' G B 6 -18.459 -45.488 20.159 1.00 58.76 O
ATOM 11 C2' G B 6 -18.469 -43.818 18.382 1.00 59.02 C
ATOM 12 O2' G B 6 -17.765 -44.753 17.589 1.00 59.24 O
ATOM 13 C1' G B 6 -19.626 -43.206 17.598 1.00 59.15 C
ATOM 14 N9 G B 6 -19.934 -41.846 18.038 1.00 58.93 N
ATOM 15 C8 G B 6 -20.963 -41.457 18.864 1.00 59.00 C
ATOM 16 N7 G B 6 -20.991 -40.176 19.099 1.00 59.25 N
ATOM 17 C5 G B 6 -19.907 -39.675 18.388 1.00 58.93 C
ATOM 18 C6 G B 6 -19.430 -38.344 18.260 1.00 58.79 C
ATOM 19 O6 G B 6 -19.893 -37.318 18.770 1.00 59.47 O
ATOM 20 N1 G B 6 -18.303 -38.252 17.444 1.00 58.30 N
ATOM 21 C2 G B 6 -17.708 -39.331 16.832 1.00 58.48 C
ATOM 22 N2 G B 6 -16.632 -39.064 16.082 1.00 57.94 N
ATOM 23 N3 G B 6 -18.145 -40.586 16.941 1.00 58.67 N
ATOM 24 C4 G B 6 -19.246 -40.690 17.731 1.00 58.76 C
ATOM 25 P G B 7 -17.868 -45.226 21.622 1.00 58.30 P
ATOM 26 OP1 G B 7 -16.993 -46.371 21.972 1.00 58.01 O
ATOM 27 OP2 G B 7 -18.993 -44.862 22.511 1.00 58.50 O
ATOM 28 O5' G B 7 -16.979 -43.918 21.412 1.00 58.11 O
TER
Atoms:
OP1: (-18.180,-46.461,4.595)
OP2: (-18.254,-47.207,7.059)
C3': (-16.271,-42.907,7.817)
C1': (-18.043,-42.287,9.214)
C5': (-17.770,-43.632,5.878)
O4': (-18.555,-42.692,7.955)
C8: (-18.547,-44.638,10.040)
O2': (-16.358,-40.636,8.682)
C6: (-18.893,-44.400,13.543)
C5: (-18.727,-44.341,12.139)
C4: (-18.449,-43.099,11.596)
P: (-18.426,-46.159,6.023)
C4': (-17.499,-42.622,6.968)
C2': (-16.559,-41.999,9.002)
C2: (-18.498,-42.119,13.585)
N1: (-18.771,-43.253,14.247)
N3: (-18.322,-41.941,12.274)
N6: (-19.160,-45.526,14.209)
N7: (-18.786,-45.304,11.147)
N9: (-18.332,-43.301,10.234)
O5': (-17.514,-44.916,6.419)
O3': (-15.056,-42.591,7.146)
OP2: (-18.254,-47.207,7.059)
C3': (-16.271,-42.907,7.817)
C1': (-18.043,-42.287,9.214)
C5': (-17.770,-43.632,5.878)
O4': (-18.555,-42.692,7.955)
C8: (-18.547,-44.638,10.040)
O2': (-16.358,-40.636,8.682)
C6: (-18.893,-44.400,13.543)
C5: (-18.727,-44.341,12.139)
C4: (-18.449,-43.099,11.596)
P: (-18.426,-46.159,6.023)
C4': (-17.499,-42.622,6.968)
C2': (-16.559,-41.999,9.002)
C2: (-18.498,-42.119,13.585)
N1: (-18.771,-43.253,14.247)
N3: (-18.322,-41.941,12.274)
N6: (-19.160,-45.526,14.209)
N7: (-18.786,-45.304,11.147)
N9: (-18.332,-43.301,10.234)
O5': (-17.514,-44.916,6.419)
O3': (-15.056,-42.591,7.146)
OP1: (-23.584,-45.505,21.877)
OP2: (-23.638,-42.952,21.724)
C3': (-19.224,-44.482,19.526)
C1': (-19.626,-43.206,17.598)
C5': (-21.600,-45.429,19.631)
O6: (-19.893,-37.318,18.770)
O4': (-20.746,-44.043,17.829)
C8: (-20.963,-41.457,18.864)
C2: (-17.708,-39.331,16.832)
C6: (-19.430,-38.344,18.260)
C5: (-19.907,-39.675,18.388)
C4: (-19.246,-40.690,17.731)
P: (-23.484,-44.270,21.068)
C4': (-20.398,-45.083,18.777)
C2': (-18.469,-43.818,18.382)
O2': (-17.765,-44.753,17.589)
N1: (-18.303,-38.252,17.444)
N2: (-16.632,-39.064,16.082)
N3: (-18.145,-40.586,16.941)
N7: (-20.991,-40.176,19.099)
N9: (-19.934,-41.846,18.038)
O5': (-22.072,-44.269,20.315)
O3': (-18.459,-45.488,20.159)
OP2: (-23.638,-42.952,21.724)
C3': (-19.224,-44.482,19.526)
C1': (-19.626,-43.206,17.598)
C5': (-21.600,-45.429,19.631)
O6: (-19.893,-37.318,18.770)
O4': (-20.746,-44.043,17.829)
C8: (-20.963,-41.457,18.864)
C2: (-17.708,-39.331,16.832)
C6: (-19.430,-38.344,18.260)
C5: (-19.907,-39.675,18.388)
C4: (-19.246,-40.690,17.731)
P: (-23.484,-44.270,21.068)
C4': (-20.398,-45.083,18.777)
C2': (-18.469,-43.818,18.382)
O2': (-17.765,-44.753,17.589)
N1: (-18.303,-38.252,17.444)
N2: (-16.632,-39.064,16.082)
N3: (-18.145,-40.586,16.941)
N7: (-20.991,-40.176,19.099)
N9: (-19.934,-41.846,18.038)
O5': (-22.072,-44.269,20.315)
O3': (-18.459,-45.488,20.159)
Image (generated by PyMOL):