Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:A6:B61
Extra
PDB:
ATOM 1 O3' U A 5 8.981 -25.666 7.264 1.00 74.35 O
ATOM 2 P G A 6 9.498 -26.933 8.099 1.00 73.78 P
ATOM 3 OP1 G A 6 10.705 -26.504 8.842 1.00 73.77 O
ATOM 4 OP2 G A 6 9.558 -28.111 7.201 1.00 73.53 O
ATOM 5 O5' G A 6 8.318 -27.197 9.141 1.00 73.20 O
ATOM 6 C5' G A 6 7.917 -26.175 10.045 1.00 73.34 C
ATOM 7 C4' G A 6 6.506 -26.425 10.533 1.00 73.05 C
ATOM 8 O4' G A 6 5.588 -26.411 9.412 1.00 73.86 O
ATOM 9 C3' G A 6 6.276 -27.791 11.152 1.00 72.10 C
ATOM 10 O3' G A 6 6.726 -27.810 12.488 1.00 71.39 O
ATOM 11 C2' G A 6 4.761 -27.899 11.056 1.00 72.54 C
ATOM 12 O2' G A 6 4.095 -27.156 12.060 1.00 72.78 O
ATOM 13 C1' G A 6 4.513 -27.303 9.669 1.00 73.36 C
ATOM 14 N9 G A 6 4.453 -28.322 8.621 1.00 73.21 N
ATOM 15 C8 G A 6 5.418 -28.611 7.686 1.00 73.61 C
ATOM 16 N7 G A 6 5.094 -29.579 6.877 1.00 73.88 N
ATOM 17 C5 G A 6 3.832 -29.964 7.303 1.00 73.73 C
ATOM 18 C6 G A 6 2.972 -30.974 6.806 1.00 74.17 C
ATOM 19 O6 G A 6 3.171 -31.744 5.856 1.00 74.81 O
ATOM 20 N1 G A 6 1.772 -31.041 7.518 1.00 74.07 N
ATOM 21 C2 G A 6 1.454 -30.229 8.586 1.00 73.61 C
ATOM 22 N2 G A 6 0.260 -30.430 9.159 1.00 73.24 N
ATOM 23 N3 G A 6 2.255 -29.280 9.060 1.00 73.47 N
ATOM 24 C4 G A 6 3.424 -29.200 8.375 1.00 73.29 C
ATOM 25 P G A 7 7.499 -29.096 13.039 1.00 71.19 P
ATOM 26 OP1 G A 7 7.793 -28.862 14.471 1.00 71.00 O
ATOM 27 OP2 G A 7 8.598 -29.440 12.105 1.00 71.39 O
ATOM 28 O5' G A 7 6.403 -30.248 12.904 1.00 71.04 O
TER
ATOM 1 O3' G B 60 -3.729 -18.531 9.297 1.00 82.54 O
ATOM 2 P A B 61 -4.296 -18.730 10.785 1.00 80.90 P
ATOM 3 OP1 A B 61 -5.488 -17.859 10.924 1.00 81.12 O
ATOM 4 OP2 A B 61 -3.174 -18.619 11.750 1.00 80.31 O
ATOM 5 O5' A B 61 -4.758 -20.258 10.762 1.00 78.29 O
ATOM 6 C5' A B 61 -5.451 -20.773 9.633 1.00 75.54 C
ATOM 7 C4' A B 61 -5.022 -22.199 9.351 1.00 72.85 C
ATOM 8 O4' A B 61 -3.687 -22.231 8.792 1.00 72.03 O
ATOM 9 C3' A B 61 -4.841 -23.089 10.566 1.00 71.22 C
ATOM 10 O3' A B 61 -6.077 -23.450 11.140 1.00 69.84 O
ATOM 11 C2' A B 61 -4.132 -24.261 9.908 1.00 70.58 C
ATOM 12 O2' A B 61 -4.994 -25.053 9.110 1.00 70.37 O
ATOM 13 C1' A B 61 -3.127 -23.509 9.041 1.00 70.60 C
ATOM 14 N9 A B 61 -1.820 -23.378 9.684 1.00 69.81 N
ATOM 15 C8 A B 61 -1.380 -22.359 10.485 1.00 70.08 C
ATOM 16 N7 A B 61 -0.155 -22.521 10.930 1.00 69.68 N
ATOM 17 C5 A B 61 0.238 -23.731 10.385 1.00 68.83 C
ATOM 18 C6 A B 61 1.435 -24.473 10.471 1.00 68.31 C
ATOM 19 N6 A B 61 2.501 -24.078 11.174 1.00 68.57 N
ATOM 20 N1 A B 61 1.500 -25.648 9.808 1.00 67.92 N
ATOM 21 C2 A B 61 0.436 -26.051 9.098 1.00 68.10 C
ATOM 22 N3 A B 61 -0.740 -25.438 8.942 1.00 68.40 N
ATOM 23 C4 A B 61 -0.777 -24.274 9.616 1.00 68.88 C
ATOM 24 P A B 62 -6.149 -23.747 12.711 1.00 68.12 P
ATOM 25 OP1 A B 62 -7.567 -23.596 13.109 1.00 68.45 O
ATOM 26 OP2 A B 62 -5.102 -22.977 13.419 1.00 67.86 O
ATOM 27 O5' A B 62 -5.726 -25.286 12.780 1.00 66.82 O
TER
ATOM 2 P G A 6 9.498 -26.933 8.099 1.00 73.78 P
ATOM 3 OP1 G A 6 10.705 -26.504 8.842 1.00 73.77 O
ATOM 4 OP2 G A 6 9.558 -28.111 7.201 1.00 73.53 O
ATOM 5 O5' G A 6 8.318 -27.197 9.141 1.00 73.20 O
ATOM 6 C5' G A 6 7.917 -26.175 10.045 1.00 73.34 C
ATOM 7 C4' G A 6 6.506 -26.425 10.533 1.00 73.05 C
ATOM 8 O4' G A 6 5.588 -26.411 9.412 1.00 73.86 O
ATOM 9 C3' G A 6 6.276 -27.791 11.152 1.00 72.10 C
ATOM 10 O3' G A 6 6.726 -27.810 12.488 1.00 71.39 O
ATOM 11 C2' G A 6 4.761 -27.899 11.056 1.00 72.54 C
ATOM 12 O2' G A 6 4.095 -27.156 12.060 1.00 72.78 O
ATOM 13 C1' G A 6 4.513 -27.303 9.669 1.00 73.36 C
ATOM 14 N9 G A 6 4.453 -28.322 8.621 1.00 73.21 N
ATOM 15 C8 G A 6 5.418 -28.611 7.686 1.00 73.61 C
ATOM 16 N7 G A 6 5.094 -29.579 6.877 1.00 73.88 N
ATOM 17 C5 G A 6 3.832 -29.964 7.303 1.00 73.73 C
ATOM 18 C6 G A 6 2.972 -30.974 6.806 1.00 74.17 C
ATOM 19 O6 G A 6 3.171 -31.744 5.856 1.00 74.81 O
ATOM 20 N1 G A 6 1.772 -31.041 7.518 1.00 74.07 N
ATOM 21 C2 G A 6 1.454 -30.229 8.586 1.00 73.61 C
ATOM 22 N2 G A 6 0.260 -30.430 9.159 1.00 73.24 N
ATOM 23 N3 G A 6 2.255 -29.280 9.060 1.00 73.47 N
ATOM 24 C4 G A 6 3.424 -29.200 8.375 1.00 73.29 C
ATOM 25 P G A 7 7.499 -29.096 13.039 1.00 71.19 P
ATOM 26 OP1 G A 7 7.793 -28.862 14.471 1.00 71.00 O
ATOM 27 OP2 G A 7 8.598 -29.440 12.105 1.00 71.39 O
ATOM 28 O5' G A 7 6.403 -30.248 12.904 1.00 71.04 O
TER
ATOM 1 O3' G B 60 -3.729 -18.531 9.297 1.00 82.54 O
ATOM 2 P A B 61 -4.296 -18.730 10.785 1.00 80.90 P
ATOM 3 OP1 A B 61 -5.488 -17.859 10.924 1.00 81.12 O
ATOM 4 OP2 A B 61 -3.174 -18.619 11.750 1.00 80.31 O
ATOM 5 O5' A B 61 -4.758 -20.258 10.762 1.00 78.29 O
ATOM 6 C5' A B 61 -5.451 -20.773 9.633 1.00 75.54 C
ATOM 7 C4' A B 61 -5.022 -22.199 9.351 1.00 72.85 C
ATOM 8 O4' A B 61 -3.687 -22.231 8.792 1.00 72.03 O
ATOM 9 C3' A B 61 -4.841 -23.089 10.566 1.00 71.22 C
ATOM 10 O3' A B 61 -6.077 -23.450 11.140 1.00 69.84 O
ATOM 11 C2' A B 61 -4.132 -24.261 9.908 1.00 70.58 C
ATOM 12 O2' A B 61 -4.994 -25.053 9.110 1.00 70.37 O
ATOM 13 C1' A B 61 -3.127 -23.509 9.041 1.00 70.60 C
ATOM 14 N9 A B 61 -1.820 -23.378 9.684 1.00 69.81 N
ATOM 15 C8 A B 61 -1.380 -22.359 10.485 1.00 70.08 C
ATOM 16 N7 A B 61 -0.155 -22.521 10.930 1.00 69.68 N
ATOM 17 C5 A B 61 0.238 -23.731 10.385 1.00 68.83 C
ATOM 18 C6 A B 61 1.435 -24.473 10.471 1.00 68.31 C
ATOM 19 N6 A B 61 2.501 -24.078 11.174 1.00 68.57 N
ATOM 20 N1 A B 61 1.500 -25.648 9.808 1.00 67.92 N
ATOM 21 C2 A B 61 0.436 -26.051 9.098 1.00 68.10 C
ATOM 22 N3 A B 61 -0.740 -25.438 8.942 1.00 68.40 N
ATOM 23 C4 A B 61 -0.777 -24.274 9.616 1.00 68.88 C
ATOM 24 P A B 62 -6.149 -23.747 12.711 1.00 68.12 P
ATOM 25 OP1 A B 62 -7.567 -23.596 13.109 1.00 68.45 O
ATOM 26 OP2 A B 62 -5.102 -22.977 13.419 1.00 67.86 O
ATOM 27 O5' A B 62 -5.726 -25.286 12.780 1.00 66.82 O
TER
Atoms:
OP1: (10.705,-26.504,8.842)
OP2: (9.558,-28.111,7.201)
C3': (6.276,-27.791,11.152)
C1': (4.513,-27.303,9.669)
C5': (7.917,-26.175,10.045)
O6: (3.171,-31.744,5.856)
O4': (5.588,-26.411,9.412)
C8: (5.418,-28.611,7.686)
C2: (1.454,-30.229,8.586)
C6: (2.972,-30.974,6.806)
C5: (3.832,-29.964,7.303)
C4: (3.424,-29.200,8.375)
P: (9.498,-26.933,8.099)
C4': (6.506,-26.425,10.533)
C2': (4.761,-27.899,11.056)
O2': (4.095,-27.156,12.060)
N1: (1.772,-31.041,7.518)
N2: (0.260,-30.430,9.159)
N3: (2.255,-29.280,9.060)
N7: (5.094,-29.579,6.877)
N9: (4.453,-28.322,8.621)
O5': (8.318,-27.197,9.141)
O3': (6.726,-27.810,12.488)
OP2: (9.558,-28.111,7.201)
C3': (6.276,-27.791,11.152)
C1': (4.513,-27.303,9.669)
C5': (7.917,-26.175,10.045)
O6: (3.171,-31.744,5.856)
O4': (5.588,-26.411,9.412)
C8: (5.418,-28.611,7.686)
C2: (1.454,-30.229,8.586)
C6: (2.972,-30.974,6.806)
C5: (3.832,-29.964,7.303)
C4: (3.424,-29.200,8.375)
P: (9.498,-26.933,8.099)
C4': (6.506,-26.425,10.533)
C2': (4.761,-27.899,11.056)
O2': (4.095,-27.156,12.060)
N1: (1.772,-31.041,7.518)
N2: (0.260,-30.430,9.159)
N3: (2.255,-29.280,9.060)
N7: (5.094,-29.579,6.877)
N9: (4.453,-28.322,8.621)
O5': (8.318,-27.197,9.141)
O3': (6.726,-27.810,12.488)
OP1: (-5.488,-17.859,10.924)
OP2: (-3.174,-18.619,11.750)
C3': (-4.841,-23.089,10.566)
C1': (-3.127,-23.509,9.041)
C5': (-5.451,-20.773,9.633)
O4': (-3.687,-22.231,8.792)
C8: (-1.380,-22.359,10.485)
O2': (-4.994,-25.053,9.110)
C6: (1.435,-24.473,10.471)
C5: (0.238,-23.731,10.385)
C4: (-0.777,-24.274,9.616)
P: (-4.296,-18.730,10.785)
C4': (-5.022,-22.199,9.351)
C2': (-4.132,-24.261,9.908)
C2: (0.436,-26.051,9.098)
N1: (1.500,-25.648,9.808)
N3: (-0.740,-25.438,8.942)
N6: (2.501,-24.078,11.174)
N7: (-0.155,-22.521,10.930)
N9: (-1.820,-23.378,9.684)
O5': (-4.758,-20.258,10.762)
O3': (-6.077,-23.450,11.140)
OP2: (-3.174,-18.619,11.750)
C3': (-4.841,-23.089,10.566)
C1': (-3.127,-23.509,9.041)
C5': (-5.451,-20.773,9.633)
O4': (-3.687,-22.231,8.792)
C8: (-1.380,-22.359,10.485)
O2': (-4.994,-25.053,9.110)
C6: (1.435,-24.473,10.471)
C5: (0.238,-23.731,10.385)
C4: (-0.777,-24.274,9.616)
P: (-4.296,-18.730,10.785)
C4': (-5.022,-22.199,9.351)
C2': (-4.132,-24.261,9.908)
C2: (0.436,-26.051,9.098)
N1: (1.500,-25.648,9.808)
N3: (-0.740,-25.438,8.942)
N6: (2.501,-24.078,11.174)
N7: (-0.155,-22.521,10.930)
N9: (-1.820,-23.378,9.684)
O5': (-4.758,-20.258,10.762)
O3': (-6.077,-23.450,11.140)
Image (generated by PyMOL):