Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:A83:B38
Extra
PDB:
ATOM 1 O3' A A 82 -5.411 -26.885 6.641 1.00 70.87 O
ATOM 2 P G A 83 -5.901 -26.362 5.212 1.00 73.09 P
ATOM 3 OP1 G A 83 -7.214 -25.705 5.388 1.00 73.47 O
ATOM 4 OP2 G A 83 -5.746 -27.448 4.215 1.00 73.20 O
ATOM 5 O5' G A 83 -4.802 -25.257 4.876 1.00 74.78 O
ATOM 6 C5' G A 83 -4.777 -24.033 5.598 1.00 76.13 C
ATOM 7 C4' G A 83 -3.430 -23.363 5.437 1.00 77.28 C
ATOM 8 O4' G A 83 -2.385 -24.302 5.783 1.00 76.46 O
ATOM 9 C3' G A 83 -3.049 -22.962 4.025 1.00 79.23 C
ATOM 10 O3' G A 83 -3.706 -21.775 3.638 1.00 81.85 O
ATOM 11 C2' G A 83 -1.553 -22.769 4.211 1.00 78.79 C
ATOM 12 O2' G A 83 -1.228 -21.630 4.985 1.00 79.30 O
ATOM 13 C1' G A 83 -1.233 -24.031 5.003 1.00 76.87 C
ATOM 14 N9 G A 83 -0.912 -25.193 4.171 1.00 76.58 N
ATOM 15 C8 G A 83 -1.679 -26.316 3.955 1.00 76.40 C
ATOM 16 N7 G A 83 -1.122 -27.191 3.161 1.00 76.43 N
ATOM 17 C5 G A 83 0.095 -26.613 2.821 1.00 76.44 C
ATOM 18 C6 G A 83 1.141 -27.086 1.985 1.00 76.39 C
ATOM 19 O6 G A 83 1.203 -28.149 1.354 1.00 76.30 O
ATOM 20 N1 G A 83 2.201 -26.185 1.911 1.00 76.69 N
ATOM 21 C2 G A 83 2.247 -24.974 2.562 1.00 76.89 C
ATOM 22 N2 G A 83 3.348 -24.235 2.380 1.00 77.33 N
ATOM 23 N3 G A 83 1.282 -24.521 3.350 1.00 76.89 N
ATOM 24 C4 G A 83 0.238 -25.386 3.436 1.00 76.66 C
ATOM 25 P A A 84 -4.266 -21.653 2.146 1.00 84.75 P
ATOM 26 OP1 A A 84 -5.150 -20.468 2.108 1.00 86.10 O
ATOM 27 OP2 A A 84 -4.792 -22.966 1.707 1.00 84.10 O
ATOM 28 O5' A A 84 -2.934 -21.355 1.312 1.00 86.66 O
TER
ATOM 1 O3' C B 37 5.975 -18.554 13.726 1.00 79.11 O
ATOM 2 P A B 38 6.724 -17.875 12.478 1.00 79.08 P
ATOM 3 OP1 A B 38 8.073 -17.487 12.945 1.00 79.28 O
ATOM 4 OP2 A B 38 5.848 -16.866 11.835 1.00 79.21 O
ATOM 5 O5' A B 38 6.858 -19.108 11.470 1.00 77.94 O
ATOM 6 C5' A B 38 7.664 -20.229 11.822 1.00 77.02 C
ATOM 7 C4' A B 38 7.688 -21.254 10.703 1.00 76.34 C
ATOM 8 O4' A B 38 6.519 -22.109 10.792 1.00 75.74 O
ATOM 9 C3' A B 38 7.637 -20.689 9.289 1.00 76.46 C
ATOM 10 O3' A B 38 8.941 -20.278 8.867 1.00 77.00 O
ATOM 11 C2' A B 38 7.109 -21.894 8.518 1.00 75.44 C
ATOM 12 O2' A B 38 8.106 -22.869 8.268 1.00 74.69 O
ATOM 13 C1' A B 38 6.079 -22.462 9.491 1.00 74.85 C
ATOM 14 N9 A B 38 4.709 -21.981 9.280 1.00 74.23 N
ATOM 15 C8 A B 38 4.091 -20.945 9.925 1.00 74.64 C
ATOM 16 N7 A B 38 2.853 -20.733 9.543 1.00 74.57 N
ATOM 17 C5 A B 38 2.637 -21.699 8.575 1.00 73.77 C
ATOM 18 C6 A B 38 1.517 -22.011 7.774 1.00 73.38 C
ATOM 19 N6 A B 38 0.360 -21.345 7.830 1.00 73.51 N
ATOM 20 N1 A B 38 1.627 -23.039 6.906 1.00 72.99 N
ATOM 21 C2 A B 38 2.786 -23.710 6.847 1.00 72.55 C
ATOM 22 N3 A B 38 3.904 -23.506 7.546 1.00 72.64 N
ATOM 23 C4 A B 38 3.769 -22.478 8.402 1.00 73.44 C
ATOM 24 P A B 39 9.151 -19.029 7.881 1.00 77.99 P
ATOM 25 OP1 A B 39 10.607 -18.791 7.797 1.00 78.66 O
ATOM 26 OP2 A B 39 8.275 -17.906 8.277 1.00 78.22 O
ATOM 27 O5' A B 39 8.618 -19.591 6.481 1.00 78.41 O
TER
ATOM 2 P G A 83 -5.901 -26.362 5.212 1.00 73.09 P
ATOM 3 OP1 G A 83 -7.214 -25.705 5.388 1.00 73.47 O
ATOM 4 OP2 G A 83 -5.746 -27.448 4.215 1.00 73.20 O
ATOM 5 O5' G A 83 -4.802 -25.257 4.876 1.00 74.78 O
ATOM 6 C5' G A 83 -4.777 -24.033 5.598 1.00 76.13 C
ATOM 7 C4' G A 83 -3.430 -23.363 5.437 1.00 77.28 C
ATOM 8 O4' G A 83 -2.385 -24.302 5.783 1.00 76.46 O
ATOM 9 C3' G A 83 -3.049 -22.962 4.025 1.00 79.23 C
ATOM 10 O3' G A 83 -3.706 -21.775 3.638 1.00 81.85 O
ATOM 11 C2' G A 83 -1.553 -22.769 4.211 1.00 78.79 C
ATOM 12 O2' G A 83 -1.228 -21.630 4.985 1.00 79.30 O
ATOM 13 C1' G A 83 -1.233 -24.031 5.003 1.00 76.87 C
ATOM 14 N9 G A 83 -0.912 -25.193 4.171 1.00 76.58 N
ATOM 15 C8 G A 83 -1.679 -26.316 3.955 1.00 76.40 C
ATOM 16 N7 G A 83 -1.122 -27.191 3.161 1.00 76.43 N
ATOM 17 C5 G A 83 0.095 -26.613 2.821 1.00 76.44 C
ATOM 18 C6 G A 83 1.141 -27.086 1.985 1.00 76.39 C
ATOM 19 O6 G A 83 1.203 -28.149 1.354 1.00 76.30 O
ATOM 20 N1 G A 83 2.201 -26.185 1.911 1.00 76.69 N
ATOM 21 C2 G A 83 2.247 -24.974 2.562 1.00 76.89 C
ATOM 22 N2 G A 83 3.348 -24.235 2.380 1.00 77.33 N
ATOM 23 N3 G A 83 1.282 -24.521 3.350 1.00 76.89 N
ATOM 24 C4 G A 83 0.238 -25.386 3.436 1.00 76.66 C
ATOM 25 P A A 84 -4.266 -21.653 2.146 1.00 84.75 P
ATOM 26 OP1 A A 84 -5.150 -20.468 2.108 1.00 86.10 O
ATOM 27 OP2 A A 84 -4.792 -22.966 1.707 1.00 84.10 O
ATOM 28 O5' A A 84 -2.934 -21.355 1.312 1.00 86.66 O
TER
ATOM 1 O3' C B 37 5.975 -18.554 13.726 1.00 79.11 O
ATOM 2 P A B 38 6.724 -17.875 12.478 1.00 79.08 P
ATOM 3 OP1 A B 38 8.073 -17.487 12.945 1.00 79.28 O
ATOM 4 OP2 A B 38 5.848 -16.866 11.835 1.00 79.21 O
ATOM 5 O5' A B 38 6.858 -19.108 11.470 1.00 77.94 O
ATOM 6 C5' A B 38 7.664 -20.229 11.822 1.00 77.02 C
ATOM 7 C4' A B 38 7.688 -21.254 10.703 1.00 76.34 C
ATOM 8 O4' A B 38 6.519 -22.109 10.792 1.00 75.74 O
ATOM 9 C3' A B 38 7.637 -20.689 9.289 1.00 76.46 C
ATOM 10 O3' A B 38 8.941 -20.278 8.867 1.00 77.00 O
ATOM 11 C2' A B 38 7.109 -21.894 8.518 1.00 75.44 C
ATOM 12 O2' A B 38 8.106 -22.869 8.268 1.00 74.69 O
ATOM 13 C1' A B 38 6.079 -22.462 9.491 1.00 74.85 C
ATOM 14 N9 A B 38 4.709 -21.981 9.280 1.00 74.23 N
ATOM 15 C8 A B 38 4.091 -20.945 9.925 1.00 74.64 C
ATOM 16 N7 A B 38 2.853 -20.733 9.543 1.00 74.57 N
ATOM 17 C5 A B 38 2.637 -21.699 8.575 1.00 73.77 C
ATOM 18 C6 A B 38 1.517 -22.011 7.774 1.00 73.38 C
ATOM 19 N6 A B 38 0.360 -21.345 7.830 1.00 73.51 N
ATOM 20 N1 A B 38 1.627 -23.039 6.906 1.00 72.99 N
ATOM 21 C2 A B 38 2.786 -23.710 6.847 1.00 72.55 C
ATOM 22 N3 A B 38 3.904 -23.506 7.546 1.00 72.64 N
ATOM 23 C4 A B 38 3.769 -22.478 8.402 1.00 73.44 C
ATOM 24 P A B 39 9.151 -19.029 7.881 1.00 77.99 P
ATOM 25 OP1 A B 39 10.607 -18.791 7.797 1.00 78.66 O
ATOM 26 OP2 A B 39 8.275 -17.906 8.277 1.00 78.22 O
ATOM 27 O5' A B 39 8.618 -19.591 6.481 1.00 78.41 O
TER
Atoms:
OP1: (-7.214,-25.705,5.388)
OP2: (-5.746,-27.448,4.215)
C3': (-3.049,-22.962,4.025)
C1': (-1.233,-24.031,5.003)
C5': (-4.777,-24.033,5.598)
O6: (1.203,-28.149,1.354)
O4': (-2.385,-24.302,5.783)
C8: (-1.679,-26.316,3.955)
C2: (2.247,-24.974,2.562)
C6: (1.141,-27.086,1.985)
C5: (0.095,-26.613,2.821)
C4: (0.238,-25.386,3.436)
P: (-5.901,-26.362,5.212)
C4': (-3.430,-23.363,5.437)
C2': (-1.553,-22.769,4.211)
O2': (-1.228,-21.630,4.985)
N1: (2.201,-26.185,1.911)
N2: (3.348,-24.235,2.380)
N3: (1.282,-24.521,3.350)
N7: (-1.122,-27.191,3.161)
N9: (-0.912,-25.193,4.171)
O5': (-4.802,-25.257,4.876)
O3': (-3.706,-21.775,3.638)
OP2: (-5.746,-27.448,4.215)
C3': (-3.049,-22.962,4.025)
C1': (-1.233,-24.031,5.003)
C5': (-4.777,-24.033,5.598)
O6: (1.203,-28.149,1.354)
O4': (-2.385,-24.302,5.783)
C8: (-1.679,-26.316,3.955)
C2: (2.247,-24.974,2.562)
C6: (1.141,-27.086,1.985)
C5: (0.095,-26.613,2.821)
C4: (0.238,-25.386,3.436)
P: (-5.901,-26.362,5.212)
C4': (-3.430,-23.363,5.437)
C2': (-1.553,-22.769,4.211)
O2': (-1.228,-21.630,4.985)
N1: (2.201,-26.185,1.911)
N2: (3.348,-24.235,2.380)
N3: (1.282,-24.521,3.350)
N7: (-1.122,-27.191,3.161)
N9: (-0.912,-25.193,4.171)
O5': (-4.802,-25.257,4.876)
O3': (-3.706,-21.775,3.638)
OP1: (8.073,-17.487,12.945)
OP2: (5.848,-16.866,11.835)
C3': (7.637,-20.689,9.289)
C1': (6.079,-22.462,9.491)
C5': (7.664,-20.229,11.822)
O4': (6.519,-22.109,10.792)
C8: (4.091,-20.945,9.925)
O2': (8.106,-22.869,8.268)
C6: (1.517,-22.011,7.774)
C5: (2.637,-21.699,8.575)
C4: (3.769,-22.478,8.402)
P: (6.724,-17.875,12.478)
C4': (7.688,-21.254,10.703)
C2': (7.109,-21.894,8.518)
C2: (2.786,-23.710,6.847)
N1: (1.627,-23.039,6.906)
N3: (3.904,-23.506,7.546)
N6: (0.360,-21.345,7.830)
N7: (2.853,-20.733,9.543)
N9: (4.709,-21.981,9.280)
O5': (6.858,-19.108,11.470)
O3': (8.941,-20.278,8.867)
OP2: (5.848,-16.866,11.835)
C3': (7.637,-20.689,9.289)
C1': (6.079,-22.462,9.491)
C5': (7.664,-20.229,11.822)
O4': (6.519,-22.109,10.792)
C8: (4.091,-20.945,9.925)
O2': (8.106,-22.869,8.268)
C6: (1.517,-22.011,7.774)
C5: (2.637,-21.699,8.575)
C4: (3.769,-22.478,8.402)
P: (6.724,-17.875,12.478)
C4': (7.688,-21.254,10.703)
C2': (7.109,-21.894,8.518)
C2: (2.786,-23.710,6.847)
N1: (1.627,-23.039,6.906)
N3: (3.904,-23.506,7.546)
N6: (0.360,-21.345,7.830)
N7: (2.853,-20.733,9.543)
N9: (4.709,-21.981,9.280)
O5': (6.858,-19.108,11.470)
O3': (8.941,-20.278,8.867)
Image (generated by PyMOL):