Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A7:A55
Extra
PDB:
ATOM 1 O3' C A 6 0.272 24.074 17.042 1.00 20.94 O
ATOM 2 P G A 7 -0.340 25.223 17.955 1.00 23.03 P
ATOM 3 OP1 G A 7 0.880 25.979 18.368 1.00 21.35 O
ATOM 4 OP2 G A 7 -1.223 24.615 18.992 1.00 22.70 O
ATOM 5 O5' G A 7 -1.251 26.066 16.953 1.00 23.14 O
ATOM 6 C5' G A 7 -0.711 26.657 15.781 1.00 21.41 C
ATOM 7 C4' G A 7 -1.146 28.091 15.660 1.00 18.23 C
ATOM 8 O4' G A 7 -2.605 28.177 15.685 1.00 20.19 O
ATOM 9 C3' G A 7 -0.704 29.015 16.788 1.00 18.25 C
ATOM 10 O3' G A 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 11 C2' G A 7 -1.736 30.130 16.692 1.00 18.73 C
ATOM 12 O2' G A 7 -1.478 30.930 15.542 1.00 18.53 O
ATOM 13 C1' G A 7 -3.008 29.322 16.400 1.00 18.54 C
ATOM 14 N9 G A 7 -3.702 28.881 17.632 1.00 18.56 N
ATOM 15 C8 G A 7 -3.600 27.659 18.256 1.00 19.03 C
ATOM 16 N7 G A 7 -4.334 27.562 19.338 1.00 19.30 N
ATOM 17 C5 G A 7 -4.961 28.803 19.439 1.00 19.03 C
ATOM 18 C6 G A 7 -5.874 29.310 20.401 1.00 21.69 C
ATOM 19 O6 G A 7 -6.335 28.714 21.385 1.00 23.01 O
ATOM 20 N1 G A 7 -6.268 30.627 20.136 1.00 18.05 N
ATOM 21 C2 G A 7 -5.819 31.361 19.062 1.00 20.62 C
ATOM 22 N2 G A 7 -6.281 32.618 18.939 1.00 19.93 N
ATOM 23 N3 G A 7 -4.969 30.895 18.154 1.00 20.21 N
ATOM 24 C4 G A 7 -4.576 29.627 18.400 1.00 19.35 C
ATOM 25 P U A 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 26 OP1 U A 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 27 OP2 U A 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 28 O5' U A 8 1.028 31.300 18.215 1.00 17.90 O
TER
ATOM 1 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 2 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 3 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 4 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 5 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
ATOM 6 C5' A B 55 -10.616 34.800 9.446 1.00 26.24 C
ATOM 7 C4' A B 55 -10.868 34.129 10.766 1.00 23.77 C
ATOM 8 O4' A B 55 -10.131 32.882 10.827 1.00 20.86 O
ATOM 9 C3' A B 55 -10.411 34.927 11.978 1.00 23.46 C
ATOM 10 O3' A B 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 11 C2' A B 55 -10.217 33.826 13.003 1.00 22.75 C
ATOM 12 O2' A B 55 -11.498 33.423 13.465 1.00 24.32 O
ATOM 13 C1' A B 55 -9.648 32.696 12.143 1.00 22.83 C
ATOM 14 N9 A B 55 -8.168 32.683 12.092 1.00 24.26 N
ATOM 15 C8 A B 55 -7.347 33.112 11.072 1.00 22.41 C
ATOM 16 N7 A B 55 -6.056 32.926 11.300 1.00 19.91 N
ATOM 17 C5 A B 55 -6.040 32.324 12.560 1.00 22.15 C
ATOM 18 C6 A B 55 -4.988 31.883 13.395 1.00 19.59 C
ATOM 19 N6 A B 55 -3.688 31.949 13.080 1.00 19.48 N
ATOM 20 N1 A B 55 -5.316 31.319 14.571 1.00 17.67 N
ATOM 21 C2 A B 55 -6.610 31.227 14.912 1.00 21.73 C
ATOM 22 N3 A B 55 -7.690 31.625 14.229 1.00 22.21 N
ATOM 23 C4 A B 55 -7.329 32.171 13.051 1.00 19.99 C
ATOM 24 P A B 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 25 OP1 A B 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 26 OP2 A B 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 27 O5' A B 56 -10.574 37.103 14.402 1.00 26.30 O
TER
ATOM 2 P G A 7 -0.340 25.223 17.955 1.00 23.03 P
ATOM 3 OP1 G A 7 0.880 25.979 18.368 1.00 21.35 O
ATOM 4 OP2 G A 7 -1.223 24.615 18.992 1.00 22.70 O
ATOM 5 O5' G A 7 -1.251 26.066 16.953 1.00 23.14 O
ATOM 6 C5' G A 7 -0.711 26.657 15.781 1.00 21.41 C
ATOM 7 C4' G A 7 -1.146 28.091 15.660 1.00 18.23 C
ATOM 8 O4' G A 7 -2.605 28.177 15.685 1.00 20.19 O
ATOM 9 C3' G A 7 -0.704 29.015 16.788 1.00 18.25 C
ATOM 10 O3' G A 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 11 C2' G A 7 -1.736 30.130 16.692 1.00 18.73 C
ATOM 12 O2' G A 7 -1.478 30.930 15.542 1.00 18.53 O
ATOM 13 C1' G A 7 -3.008 29.322 16.400 1.00 18.54 C
ATOM 14 N9 G A 7 -3.702 28.881 17.632 1.00 18.56 N
ATOM 15 C8 G A 7 -3.600 27.659 18.256 1.00 19.03 C
ATOM 16 N7 G A 7 -4.334 27.562 19.338 1.00 19.30 N
ATOM 17 C5 G A 7 -4.961 28.803 19.439 1.00 19.03 C
ATOM 18 C6 G A 7 -5.874 29.310 20.401 1.00 21.69 C
ATOM 19 O6 G A 7 -6.335 28.714 21.385 1.00 23.01 O
ATOM 20 N1 G A 7 -6.268 30.627 20.136 1.00 18.05 N
ATOM 21 C2 G A 7 -5.819 31.361 19.062 1.00 20.62 C
ATOM 22 N2 G A 7 -6.281 32.618 18.939 1.00 19.93 N
ATOM 23 N3 G A 7 -4.969 30.895 18.154 1.00 20.21 N
ATOM 24 C4 G A 7 -4.576 29.627 18.400 1.00 19.35 C
ATOM 25 P U A 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 26 OP1 U A 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 27 OP2 U A 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 28 O5' U A 8 1.028 31.300 18.215 1.00 17.90 O
TER
ATOM 1 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 2 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 3 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 4 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 5 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
ATOM 6 C5' A B 55 -10.616 34.800 9.446 1.00 26.24 C
ATOM 7 C4' A B 55 -10.868 34.129 10.766 1.00 23.77 C
ATOM 8 O4' A B 55 -10.131 32.882 10.827 1.00 20.86 O
ATOM 9 C3' A B 55 -10.411 34.927 11.978 1.00 23.46 C
ATOM 10 O3' A B 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 11 C2' A B 55 -10.217 33.826 13.003 1.00 22.75 C
ATOM 12 O2' A B 55 -11.498 33.423 13.465 1.00 24.32 O
ATOM 13 C1' A B 55 -9.648 32.696 12.143 1.00 22.83 C
ATOM 14 N9 A B 55 -8.168 32.683 12.092 1.00 24.26 N
ATOM 15 C8 A B 55 -7.347 33.112 11.072 1.00 22.41 C
ATOM 16 N7 A B 55 -6.056 32.926 11.300 1.00 19.91 N
ATOM 17 C5 A B 55 -6.040 32.324 12.560 1.00 22.15 C
ATOM 18 C6 A B 55 -4.988 31.883 13.395 1.00 19.59 C
ATOM 19 N6 A B 55 -3.688 31.949 13.080 1.00 19.48 N
ATOM 20 N1 A B 55 -5.316 31.319 14.571 1.00 17.67 N
ATOM 21 C2 A B 55 -6.610 31.227 14.912 1.00 21.73 C
ATOM 22 N3 A B 55 -7.690 31.625 14.229 1.00 22.21 N
ATOM 23 C4 A B 55 -7.329 32.171 13.051 1.00 19.99 C
ATOM 24 P A B 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 25 OP1 A B 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 26 OP2 A B 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 27 O5' A B 56 -10.574 37.103 14.402 1.00 26.30 O
TER
Atoms:
OP1: (0.880,25.979,18.368)
OP2: (-1.223,24.615,18.992)
C3': (-0.704,29.015,16.788)
C1': (-3.008,29.322,16.400)
C5': (-0.711,26.657,15.781)
O6: (-6.335,28.714,21.385)
O4': (-2.605,28.177,15.685)
C8: (-3.600,27.659,18.256)
C2: (-5.819,31.361,19.062)
C6: (-5.874,29.310,20.401)
C5: (-4.961,28.803,19.439)
C4: (-4.576,29.627,18.400)
P: (-0.340,25.223,17.955)
C4': (-1.146,28.091,15.660)
C2': (-1.736,30.130,16.692)
O2': (-1.478,30.930,15.542)
N1: (-6.268,30.627,20.136)
N2: (-6.281,32.618,18.939)
N3: (-4.969,30.895,18.154)
N7: (-4.334,27.562,19.338)
N9: (-3.702,28.881,17.632)
O5': (-1.251,26.066,16.953)
O3': (0.633,29.455,16.623)
OP2: (-1.223,24.615,18.992)
C3': (-0.704,29.015,16.788)
C1': (-3.008,29.322,16.400)
C5': (-0.711,26.657,15.781)
O6: (-6.335,28.714,21.385)
O4': (-2.605,28.177,15.685)
C8: (-3.600,27.659,18.256)
C2: (-5.819,31.361,19.062)
C6: (-5.874,29.310,20.401)
C5: (-4.961,28.803,19.439)
C4: (-4.576,29.627,18.400)
P: (-0.340,25.223,17.955)
C4': (-1.146,28.091,15.660)
C2': (-1.736,30.130,16.692)
O2': (-1.478,30.930,15.542)
N1: (-6.268,30.627,20.136)
N2: (-6.281,32.618,18.939)
N3: (-4.969,30.895,18.154)
N7: (-4.334,27.562,19.338)
N9: (-3.702,28.881,17.632)
O5': (-1.251,26.066,16.953)
O3': (0.633,29.455,16.623)
OP1: (-8.366,34.394,7.306)
OP2: (-9.384,36.739,7.335)
C3': (-10.411,34.927,11.978)
C1': (-9.648,32.696,12.143)
C5': (-10.616,34.800,9.446)
O4': (-10.131,32.882,10.827)
C8: (-7.347,33.112,11.072)
O2': (-11.498,33.423,13.465)
C6: (-4.988,31.883,13.395)
C5: (-6.040,32.324,12.560)
C4: (-7.329,32.171,13.051)
P: (-8.636,35.660,8.014)
C4': (-10.868,34.129,10.766)
C2': (-10.217,33.826,13.003)
C2: (-6.610,31.227,14.912)
N1: (-5.316,31.319,14.571)
N3: (-7.690,31.625,14.229)
N6: (-3.688,31.949,13.080)
N7: (-6.056,32.926,11.300)
N9: (-8.168,32.683,12.092)
O5': (-9.319,35.372,9.421)
O3': (-11.386,35.876,12.379)
OP2: (-9.384,36.739,7.335)
C3': (-10.411,34.927,11.978)
C1': (-9.648,32.696,12.143)
C5': (-10.616,34.800,9.446)
O4': (-10.131,32.882,10.827)
C8: (-7.347,33.112,11.072)
O2': (-11.498,33.423,13.465)
C6: (-4.988,31.883,13.395)
C5: (-6.040,32.324,12.560)
C4: (-7.329,32.171,13.051)
P: (-8.636,35.660,8.014)
C4': (-10.868,34.129,10.766)
C2': (-10.217,33.826,13.003)
C2: (-6.610,31.227,14.912)
N1: (-5.316,31.319,14.571)
N3: (-7.690,31.625,14.229)
N6: (-3.688,31.949,13.080)
N7: (-6.056,32.926,11.300)
N9: (-8.168,32.683,12.092)
O5': (-9.319,35.372,9.421)
O3': (-11.386,35.876,12.379)
Image (generated by PyMOL):