Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12054:12077
Extra
PDB:
ATOM 1 O3' G A2053 -4.051 -13.948 84.213 1.00 46.55 O
ATOM 2 P G A2054 -5.016 -13.181 83.194 1.00 45.45 P
ATOM 3 OP1 G A2054 -4.260 -12.908 81.968 1.00 45.21 O
ATOM 4 OP2 G A2054 -5.576 -12.055 83.916 1.00 45.62 O
ATOM 5 O5' G A2054 -6.135 -14.263 82.913 1.00 45.67 O
ATOM 6 C5' G A2054 -5.890 -15.371 82.068 1.00 45.58 C
ATOM 7 C4' G A2054 -7.074 -16.311 82.020 1.00 45.84 C
ATOM 8 O4' G A2054 -7.485 -16.644 83.360 1.00 46.03 O
ATOM 9 C3' G A2054 -8.353 -15.785 81.365 1.00 46.07 C
ATOM 10 O3' G A2054 -8.343 -15.935 79.975 1.00 45.99 O
ATOM 11 C2' G A2054 -9.409 -16.642 82.003 1.00 46.36 C
ATOM 12 O2' G A2054 -9.354 -17.947 81.445 1.00 46.35 O
ATOM 13 C1' G A2054 -8.894 -16.724 83.420 1.00 46.34 C
ATOM 14 N9 G A2054 -9.386 -15.620 84.263 1.00 46.49 N
ATOM 15 C8 G A2054 -8.606 -14.616 84.784 1.00 46.35 C
ATOM 16 N7 G A2054 -9.252 -13.785 85.533 1.00 46.54 N
ATOM 17 C5 G A2054 -10.540 -14.284 85.519 1.00 46.83 C
ATOM 18 C6 G A2054 -11.666 -13.771 86.173 1.00 47.14 C
ATOM 19 O6 G A2054 -11.652 -12.757 86.910 1.00 47.21 O
ATOM 20 N1 G A2054 -12.777 -14.588 85.940 1.00 47.39 N
ATOM 21 C2 G A2054 -12.777 -15.729 85.157 1.00 47.34 C
ATOM 22 N2 G A2054 -13.923 -16.408 84.973 1.00 47.61 N
ATOM 23 N3 G A2054 -11.719 -16.189 84.529 1.00 47.05 N
ATOM 24 C4 G A2054 -10.645 -15.422 84.759 1.00 46.81 C
ATOM 25 P C A2055 -8.825 -14.755 79.060 1.00 54.93 P
ATOM 26 OP1 C A2055 -8.295 -15.001 77.710 1.00 54.76 O
ATOM 27 OP2 C A2055 -8.449 -13.530 79.731 1.00 54.86 O
ATOM 28 O5' C A2055 -10.419 -14.904 79.090 1.00 55.29 O
TER
ATOM 1 O3' U B2076 -12.753 -27.174 80.719 1.00 80.98 O
ATOM 2 P A B2077 -13.005 -28.054 82.053 1.00 61.97 P
ATOM 3 OP1 A B2077 -11.666 -28.584 82.488 1.00 61.74 O
ATOM 4 OP2 A B2077 -14.116 -29.005 81.750 1.00 62.31 O
ATOM 5 O5' A B2077 -13.523 -26.976 83.094 1.00 62.05 O
ATOM 6 C5' A B2077 -14.118 -27.358 84.320 1.00 62.31 C
ATOM 7 C4' A B2077 -14.370 -26.147 85.168 1.00 62.33 C
ATOM 8 O4' A B2077 -13.107 -25.517 85.487 1.00 62.01 O
ATOM 9 C3' A B2077 -15.182 -25.054 84.498 1.00 62.39 C
ATOM 10 O3' A B2077 -16.573 -25.274 84.641 1.00 62.76 O
ATOM 11 C2' A B2077 -14.699 -23.785 85.186 1.00 62.23 C
ATOM 12 O2' A B2077 -15.391 -23.597 86.412 1.00 62.49 O
ATOM 13 C1' A B2077 -13.243 -24.126 85.507 1.00 61.94 C
ATOM 14 N9 A B2077 -12.279 -23.575 84.549 1.00 61.60 N
ATOM 15 C8 A B2077 -11.657 -24.309 83.594 1.00 61.44 C
ATOM 16 N7 A B2077 -10.784 -23.651 82.875 1.00 61.14 N
ATOM 17 C5 A B2077 -10.807 -22.395 83.420 1.00 61.11 C
ATOM 18 C6 A B2077 -10.091 -21.246 83.101 1.00 60.86 C
ATOM 19 N6 A B2077 -9.195 -21.168 82.121 1.00 60.59 N
ATOM 20 N1 A B2077 -10.335 -20.147 83.836 1.00 60.91 N
ATOM 21 C2 A B2077 -11.246 -20.209 84.815 1.00 61.19 C
ATOM 22 N3 A B2077 -11.975 -21.244 85.214 1.00 61.44 N
ATOM 23 C4 A B2077 -11.709 -22.328 84.466 1.00 61.38 C
ATOM 24 P A B2078 -17.552 -25.318 83.372 1.00 57.50 P
ATOM 25 OP1 A B2078 -18.781 -25.945 83.835 1.00 57.90 O
ATOM 26 OP2 A B2078 -16.828 -25.936 82.249 1.00 57.30 O
ATOM 27 O5' A B2078 -17.811 -23.780 83.095 1.00 57.44 O
TER
ATOM 2 P G A2054 -5.016 -13.181 83.194 1.00 45.45 P
ATOM 3 OP1 G A2054 -4.260 -12.908 81.968 1.00 45.21 O
ATOM 4 OP2 G A2054 -5.576 -12.055 83.916 1.00 45.62 O
ATOM 5 O5' G A2054 -6.135 -14.263 82.913 1.00 45.67 O
ATOM 6 C5' G A2054 -5.890 -15.371 82.068 1.00 45.58 C
ATOM 7 C4' G A2054 -7.074 -16.311 82.020 1.00 45.84 C
ATOM 8 O4' G A2054 -7.485 -16.644 83.360 1.00 46.03 O
ATOM 9 C3' G A2054 -8.353 -15.785 81.365 1.00 46.07 C
ATOM 10 O3' G A2054 -8.343 -15.935 79.975 1.00 45.99 O
ATOM 11 C2' G A2054 -9.409 -16.642 82.003 1.00 46.36 C
ATOM 12 O2' G A2054 -9.354 -17.947 81.445 1.00 46.35 O
ATOM 13 C1' G A2054 -8.894 -16.724 83.420 1.00 46.34 C
ATOM 14 N9 G A2054 -9.386 -15.620 84.263 1.00 46.49 N
ATOM 15 C8 G A2054 -8.606 -14.616 84.784 1.00 46.35 C
ATOM 16 N7 G A2054 -9.252 -13.785 85.533 1.00 46.54 N
ATOM 17 C5 G A2054 -10.540 -14.284 85.519 1.00 46.83 C
ATOM 18 C6 G A2054 -11.666 -13.771 86.173 1.00 47.14 C
ATOM 19 O6 G A2054 -11.652 -12.757 86.910 1.00 47.21 O
ATOM 20 N1 G A2054 -12.777 -14.588 85.940 1.00 47.39 N
ATOM 21 C2 G A2054 -12.777 -15.729 85.157 1.00 47.34 C
ATOM 22 N2 G A2054 -13.923 -16.408 84.973 1.00 47.61 N
ATOM 23 N3 G A2054 -11.719 -16.189 84.529 1.00 47.05 N
ATOM 24 C4 G A2054 -10.645 -15.422 84.759 1.00 46.81 C
ATOM 25 P C A2055 -8.825 -14.755 79.060 1.00 54.93 P
ATOM 26 OP1 C A2055 -8.295 -15.001 77.710 1.00 54.76 O
ATOM 27 OP2 C A2055 -8.449 -13.530 79.731 1.00 54.86 O
ATOM 28 O5' C A2055 -10.419 -14.904 79.090 1.00 55.29 O
TER
ATOM 1 O3' U B2076 -12.753 -27.174 80.719 1.00 80.98 O
ATOM 2 P A B2077 -13.005 -28.054 82.053 1.00 61.97 P
ATOM 3 OP1 A B2077 -11.666 -28.584 82.488 1.00 61.74 O
ATOM 4 OP2 A B2077 -14.116 -29.005 81.750 1.00 62.31 O
ATOM 5 O5' A B2077 -13.523 -26.976 83.094 1.00 62.05 O
ATOM 6 C5' A B2077 -14.118 -27.358 84.320 1.00 62.31 C
ATOM 7 C4' A B2077 -14.370 -26.147 85.168 1.00 62.33 C
ATOM 8 O4' A B2077 -13.107 -25.517 85.487 1.00 62.01 O
ATOM 9 C3' A B2077 -15.182 -25.054 84.498 1.00 62.39 C
ATOM 10 O3' A B2077 -16.573 -25.274 84.641 1.00 62.76 O
ATOM 11 C2' A B2077 -14.699 -23.785 85.186 1.00 62.23 C
ATOM 12 O2' A B2077 -15.391 -23.597 86.412 1.00 62.49 O
ATOM 13 C1' A B2077 -13.243 -24.126 85.507 1.00 61.94 C
ATOM 14 N9 A B2077 -12.279 -23.575 84.549 1.00 61.60 N
ATOM 15 C8 A B2077 -11.657 -24.309 83.594 1.00 61.44 C
ATOM 16 N7 A B2077 -10.784 -23.651 82.875 1.00 61.14 N
ATOM 17 C5 A B2077 -10.807 -22.395 83.420 1.00 61.11 C
ATOM 18 C6 A B2077 -10.091 -21.246 83.101 1.00 60.86 C
ATOM 19 N6 A B2077 -9.195 -21.168 82.121 1.00 60.59 N
ATOM 20 N1 A B2077 -10.335 -20.147 83.836 1.00 60.91 N
ATOM 21 C2 A B2077 -11.246 -20.209 84.815 1.00 61.19 C
ATOM 22 N3 A B2077 -11.975 -21.244 85.214 1.00 61.44 N
ATOM 23 C4 A B2077 -11.709 -22.328 84.466 1.00 61.38 C
ATOM 24 P A B2078 -17.552 -25.318 83.372 1.00 57.50 P
ATOM 25 OP1 A B2078 -18.781 -25.945 83.835 1.00 57.90 O
ATOM 26 OP2 A B2078 -16.828 -25.936 82.249 1.00 57.30 O
ATOM 27 O5' A B2078 -17.811 -23.780 83.095 1.00 57.44 O
TER
Atoms:
OP1: (-4.260,-12.908,81.968)
OP2: (-5.576,-12.055,83.916)
C3': (-8.353,-15.785,81.365)
C1': (-8.894,-16.724,83.420)
C5': (-5.890,-15.371,82.068)
O6: (-11.652,-12.757,86.910)
O4': (-7.485,-16.644,83.360)
C8: (-8.606,-14.616,84.784)
C2: (-12.777,-15.729,85.157)
C6: (-11.666,-13.771,86.173)
C5: (-10.540,-14.284,85.519)
C4: (-10.645,-15.422,84.759)
P: (-5.016,-13.181,83.194)
C4': (-7.074,-16.311,82.020)
C2': (-9.409,-16.642,82.003)
O2': (-9.354,-17.947,81.445)
N1: (-12.777,-14.588,85.940)
N2: (-13.923,-16.408,84.973)
N3: (-11.719,-16.189,84.529)
N7: (-9.252,-13.785,85.533)
N9: (-9.386,-15.620,84.263)
O5': (-6.135,-14.263,82.913)
O3': (-8.343,-15.935,79.975)
OP2: (-5.576,-12.055,83.916)
C3': (-8.353,-15.785,81.365)
C1': (-8.894,-16.724,83.420)
C5': (-5.890,-15.371,82.068)
O6: (-11.652,-12.757,86.910)
O4': (-7.485,-16.644,83.360)
C8: (-8.606,-14.616,84.784)
C2: (-12.777,-15.729,85.157)
C6: (-11.666,-13.771,86.173)
C5: (-10.540,-14.284,85.519)
C4: (-10.645,-15.422,84.759)
P: (-5.016,-13.181,83.194)
C4': (-7.074,-16.311,82.020)
C2': (-9.409,-16.642,82.003)
O2': (-9.354,-17.947,81.445)
N1: (-12.777,-14.588,85.940)
N2: (-13.923,-16.408,84.973)
N3: (-11.719,-16.189,84.529)
N7: (-9.252,-13.785,85.533)
N9: (-9.386,-15.620,84.263)
O5': (-6.135,-14.263,82.913)
O3': (-8.343,-15.935,79.975)
OP1: (-11.666,-28.584,82.488)
OP2: (-14.116,-29.005,81.750)
C3': (-15.182,-25.054,84.498)
C1': (-13.243,-24.126,85.507)
C5': (-14.118,-27.358,84.320)
O4': (-13.107,-25.517,85.487)
C8: (-11.657,-24.309,83.594)
O2': (-15.391,-23.597,86.412)
C6: (-10.091,-21.246,83.101)
C5: (-10.807,-22.395,83.420)
C4: (-11.709,-22.328,84.466)
P: (-13.005,-28.054,82.053)
C4': (-14.370,-26.147,85.168)
C2': (-14.699,-23.785,85.186)
C2: (-11.246,-20.209,84.815)
N1: (-10.335,-20.147,83.836)
N3: (-11.975,-21.244,85.214)
N6: (-9.195,-21.168,82.121)
N7: (-10.784,-23.651,82.875)
N9: (-12.279,-23.575,84.549)
O5': (-13.523,-26.976,83.094)
O3': (-16.573,-25.274,84.641)
OP2: (-14.116,-29.005,81.750)
C3': (-15.182,-25.054,84.498)
C1': (-13.243,-24.126,85.507)
C5': (-14.118,-27.358,84.320)
O4': (-13.107,-25.517,85.487)
C8: (-11.657,-24.309,83.594)
O2': (-15.391,-23.597,86.412)
C6: (-10.091,-21.246,83.101)
C5: (-10.807,-22.395,83.420)
C4: (-11.709,-22.328,84.466)
P: (-13.005,-28.054,82.053)
C4': (-14.370,-26.147,85.168)
C2': (-14.699,-23.785,85.186)
C2: (-11.246,-20.209,84.815)
N1: (-10.335,-20.147,83.836)
N3: (-11.975,-21.244,85.214)
N6: (-9.195,-21.168,82.121)
N7: (-10.784,-23.651,82.875)
N9: (-12.279,-23.575,84.549)
O5': (-13.523,-26.976,83.094)
O3': (-16.573,-25.274,84.641)
Image (generated by PyMOL):