Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12039:12354
Extra
PDB:
ATOM 1 O3' C A2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 2 P A A2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 3 OP1 A A2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 4 OP2 A A2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 5 O5' A A2039 3.514 -42.741 111.098 1.00 65.37 O
ATOM 6 C5' A A2039 3.237 -42.041 112.290 1.00 65.58 C
ATOM 7 C4' A A2039 4.053 -40.790 112.358 1.00 65.27 C
ATOM 8 O4' A A2039 5.440 -41.101 112.108 1.00 65.09 O
ATOM 9 C3' A A2039 3.730 -39.732 111.328 1.00 64.88 C
ATOM 10 O3' A A2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 11 C2' A A2039 5.013 -38.934 111.281 1.00 64.57 C
ATOM 12 O2' A A2039 5.065 -38.056 112.384 1.00 64.70 O
ATOM 13 C1' A A2039 6.064 -40.015 111.488 1.00 64.67 C
ATOM 14 N9 A A2039 6.650 -40.472 110.225 1.00 64.36 N
ATOM 15 C8 A A2039 6.346 -41.599 109.528 1.00 64.42 C
ATOM 16 N7 A A2039 7.045 -41.754 108.439 1.00 64.11 N
ATOM 17 C5 A A2039 7.869 -40.648 108.441 1.00 63.82 C
ATOM 18 C6 A A2039 8.856 -40.234 107.528 1.00 63.42 C
ATOM 19 N6 A A2039 9.127 -40.953 106.431 1.00 63.27 N
ATOM 20 N1 A A2039 9.531 -39.085 107.788 1.00 63.21 N
ATOM 21 C2 A A2039 9.187 -38.435 108.913 1.00 63.41 C
ATOM 22 N3 A A2039 8.273 -38.725 109.842 1.00 63.79 N
ATOM 23 C4 A A2039 7.649 -39.862 109.539 1.00 63.97 C
ATOM 24 P A A2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 25 OP1 A A2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 26 OP2 A A2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 27 O5' A A2040 2.061 -37.301 109.897 1.00 51.63 O
TER
ATOM 1 O3' A B2353 17.588 -40.098 106.449 1.00 53.03 O
ATOM 2 P G B2354 17.683 -39.071 105.230 1.00 50.86 P
ATOM 3 OP1 G B2354 18.202 -39.824 104.078 1.00 50.69 O
ATOM 4 OP2 G B2354 18.431 -37.872 105.698 1.00 50.71 O
ATOM 5 O5' G B2354 16.186 -38.687 104.983 1.00 50.85 O
ATOM 6 C5' G B2354 15.299 -39.637 104.457 1.00 50.97 C
ATOM 7 C4' G B2354 13.873 -39.264 104.728 1.00 51.09 C
ATOM 8 O4' G B2354 13.675 -39.034 106.140 1.00 51.38 O
ATOM 9 C3' G B2354 13.400 -37.972 104.110 1.00 50.79 C
ATOM 10 O3' G B2354 13.173 -38.079 102.727 1.00 50.54 O
ATOM 11 C2' G B2354 12.152 -37.689 104.926 1.00 51.04 C
ATOM 12 O2' G B2354 11.105 -38.591 104.571 1.00 51.22 O
ATOM 13 C1' G B2354 12.660 -38.065 106.313 1.00 51.36 C
ATOM 14 N9 G B2354 13.237 -36.910 107.013 1.00 51.28 N
ATOM 15 C8 G B2354 14.545 -36.697 107.298 1.00 51.20 C
ATOM 16 N7 G B2354 14.693 -35.585 107.933 1.00 51.17 N
ATOM 17 C5 G B2354 13.440 -35.029 108.080 1.00 51.24 C
ATOM 18 C6 G B2354 13.009 -33.813 108.699 1.00 51.27 C
ATOM 19 O6 G B2354 13.665 -32.924 109.280 1.00 51.23 O
ATOM 20 N1 G B2354 11.629 -33.687 108.599 1.00 51.36 N
ATOM 21 C2 G B2354 10.790 -34.585 107.987 1.00 51.42 C
ATOM 22 N2 G B2354 9.491 -34.254 108.008 1.00 51.52 N
ATOM 23 N3 G B2354 11.170 -35.714 107.424 1.00 51.41 N
ATOM 24 C4 G B2354 12.509 -35.860 107.515 1.00 51.31 C
ATOM 25 P G B2355 13.303 -36.790 101.796 1.00 51.17 P
ATOM 26 OP1 G B2355 12.989 -37.258 100.424 1.00 51.01 O
ATOM 27 OP2 G B2355 14.612 -36.171 102.057 1.00 51.01 O
ATOM 28 O5' G B2355 12.142 -35.836 102.333 1.00 51.25 O
TER
ATOM 2 P A A2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 3 OP1 A A2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 4 OP2 A A2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 5 O5' A A2039 3.514 -42.741 111.098 1.00 65.37 O
ATOM 6 C5' A A2039 3.237 -42.041 112.290 1.00 65.58 C
ATOM 7 C4' A A2039 4.053 -40.790 112.358 1.00 65.27 C
ATOM 8 O4' A A2039 5.440 -41.101 112.108 1.00 65.09 O
ATOM 9 C3' A A2039 3.730 -39.732 111.328 1.00 64.88 C
ATOM 10 O3' A A2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 11 C2' A A2039 5.013 -38.934 111.281 1.00 64.57 C
ATOM 12 O2' A A2039 5.065 -38.056 112.384 1.00 64.70 O
ATOM 13 C1' A A2039 6.064 -40.015 111.488 1.00 64.67 C
ATOM 14 N9 A A2039 6.650 -40.472 110.225 1.00 64.36 N
ATOM 15 C8 A A2039 6.346 -41.599 109.528 1.00 64.42 C
ATOM 16 N7 A A2039 7.045 -41.754 108.439 1.00 64.11 N
ATOM 17 C5 A A2039 7.869 -40.648 108.441 1.00 63.82 C
ATOM 18 C6 A A2039 8.856 -40.234 107.528 1.00 63.42 C
ATOM 19 N6 A A2039 9.127 -40.953 106.431 1.00 63.27 N
ATOM 20 N1 A A2039 9.531 -39.085 107.788 1.00 63.21 N
ATOM 21 C2 A A2039 9.187 -38.435 108.913 1.00 63.41 C
ATOM 22 N3 A A2039 8.273 -38.725 109.842 1.00 63.79 N
ATOM 23 C4 A A2039 7.649 -39.862 109.539 1.00 63.97 C
ATOM 24 P A A2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 25 OP1 A A2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 26 OP2 A A2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 27 O5' A A2040 2.061 -37.301 109.897 1.00 51.63 O
TER
ATOM 1 O3' A B2353 17.588 -40.098 106.449 1.00 53.03 O
ATOM 2 P G B2354 17.683 -39.071 105.230 1.00 50.86 P
ATOM 3 OP1 G B2354 18.202 -39.824 104.078 1.00 50.69 O
ATOM 4 OP2 G B2354 18.431 -37.872 105.698 1.00 50.71 O
ATOM 5 O5' G B2354 16.186 -38.687 104.983 1.00 50.85 O
ATOM 6 C5' G B2354 15.299 -39.637 104.457 1.00 50.97 C
ATOM 7 C4' G B2354 13.873 -39.264 104.728 1.00 51.09 C
ATOM 8 O4' G B2354 13.675 -39.034 106.140 1.00 51.38 O
ATOM 9 C3' G B2354 13.400 -37.972 104.110 1.00 50.79 C
ATOM 10 O3' G B2354 13.173 -38.079 102.727 1.00 50.54 O
ATOM 11 C2' G B2354 12.152 -37.689 104.926 1.00 51.04 C
ATOM 12 O2' G B2354 11.105 -38.591 104.571 1.00 51.22 O
ATOM 13 C1' G B2354 12.660 -38.065 106.313 1.00 51.36 C
ATOM 14 N9 G B2354 13.237 -36.910 107.013 1.00 51.28 N
ATOM 15 C8 G B2354 14.545 -36.697 107.298 1.00 51.20 C
ATOM 16 N7 G B2354 14.693 -35.585 107.933 1.00 51.17 N
ATOM 17 C5 G B2354 13.440 -35.029 108.080 1.00 51.24 C
ATOM 18 C6 G B2354 13.009 -33.813 108.699 1.00 51.27 C
ATOM 19 O6 G B2354 13.665 -32.924 109.280 1.00 51.23 O
ATOM 20 N1 G B2354 11.629 -33.687 108.599 1.00 51.36 N
ATOM 21 C2 G B2354 10.790 -34.585 107.987 1.00 51.42 C
ATOM 22 N2 G B2354 9.491 -34.254 108.008 1.00 51.52 N
ATOM 23 N3 G B2354 11.170 -35.714 107.424 1.00 51.41 N
ATOM 24 C4 G B2354 12.509 -35.860 107.515 1.00 51.31 C
ATOM 25 P G B2355 13.303 -36.790 101.796 1.00 51.17 P
ATOM 26 OP1 G B2355 12.989 -37.258 100.424 1.00 51.01 O
ATOM 27 OP2 G B2355 14.612 -36.171 102.057 1.00 51.01 O
ATOM 28 O5' G B2355 12.142 -35.836 102.333 1.00 51.25 O
TER
Atoms:
OP1: (1.068,-43.400,110.859)
OP2: (2.799,-44.010,109.030)
C3': (3.730,-39.732,111.328)
C1': (6.064,-40.015,111.488)
C5': (3.237,-42.041,112.290)
O4': (5.440,-41.101,112.108)
C8: (6.346,-41.599,109.528)
O2': (5.065,-38.056,112.384)
C6: (8.856,-40.234,107.528)
C5: (7.869,-40.648,108.441)
C4: (7.649,-39.862,109.539)
P: (2.473,-43.782,110.480)
C4': (4.053,-40.790,112.358)
C2': (5.013,-38.934,111.281)
C2: (9.187,-38.435,108.913)
N1: (9.531,-39.085,107.788)
N3: (8.273,-38.725,109.842)
N6: (9.127,-40.953,106.431)
N7: (7.045,-41.754,108.439)
N9: (6.650,-40.472,110.225)
O5': (3.514,-42.741,111.098)
O3': (2.612,-38.949,111.700)
OP2: (2.799,-44.010,109.030)
C3': (3.730,-39.732,111.328)
C1': (6.064,-40.015,111.488)
C5': (3.237,-42.041,112.290)
O4': (5.440,-41.101,112.108)
C8: (6.346,-41.599,109.528)
O2': (5.065,-38.056,112.384)
C6: (8.856,-40.234,107.528)
C5: (7.869,-40.648,108.441)
C4: (7.649,-39.862,109.539)
P: (2.473,-43.782,110.480)
C4': (4.053,-40.790,112.358)
C2': (5.013,-38.934,111.281)
C2: (9.187,-38.435,108.913)
N1: (9.531,-39.085,107.788)
N3: (8.273,-38.725,109.842)
N6: (9.127,-40.953,106.431)
N7: (7.045,-41.754,108.439)
N9: (6.650,-40.472,110.225)
O5': (3.514,-42.741,111.098)
O3': (2.612,-38.949,111.700)
OP1: (18.202,-39.824,104.078)
OP2: (18.431,-37.872,105.698)
C3': (13.400,-37.972,104.110)
C1': (12.660,-38.065,106.313)
C5': (15.299,-39.637,104.457)
O6: (13.665,-32.924,109.280)
O4': (13.675,-39.034,106.140)
C8: (14.545,-36.697,107.298)
C2: (10.790,-34.585,107.987)
C6: (13.009,-33.813,108.699)
C5: (13.440,-35.029,108.080)
C4: (12.509,-35.860,107.515)
P: (17.683,-39.071,105.230)
C4': (13.873,-39.264,104.728)
C2': (12.152,-37.689,104.926)
O2': (11.105,-38.591,104.571)
N1: (11.629,-33.687,108.599)
N2: (9.491,-34.254,108.008)
N3: (11.170,-35.714,107.424)
N7: (14.693,-35.585,107.933)
N9: (13.237,-36.910,107.013)
O5': (16.186,-38.687,104.983)
O3': (13.173,-38.079,102.727)
OP2: (18.431,-37.872,105.698)
C3': (13.400,-37.972,104.110)
C1': (12.660,-38.065,106.313)
C5': (15.299,-39.637,104.457)
O6: (13.665,-32.924,109.280)
O4': (13.675,-39.034,106.140)
C8: (14.545,-36.697,107.298)
C2: (10.790,-34.585,107.987)
C6: (13.009,-33.813,108.699)
C5: (13.440,-35.029,108.080)
C4: (12.509,-35.860,107.515)
P: (17.683,-39.071,105.230)
C4': (13.873,-39.264,104.728)
C2': (12.152,-37.689,104.926)
O2': (11.105,-38.591,104.571)
N1: (11.629,-33.687,108.599)
N2: (9.491,-34.254,108.008)
N3: (11.170,-35.714,107.424)
N7: (14.693,-35.585,107.933)
N9: (13.237,-36.910,107.013)
O5': (16.186,-38.687,104.983)
O3': (13.173,-38.079,102.727)
Image (generated by PyMOL):