Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0551:0582
Extra
PDB:
ATOM 1 O3' A A 550 -15.778 99.604 95.650 1.00 55.70 O
ATOM 2 P C A 551 -14.925 98.493 96.425 1.00 54.28 P
ATOM 3 OP1 C A 551 -15.579 97.176 96.219 1.00 53.98 O
ATOM 4 OP2 C A 551 -14.666 98.987 97.803 1.00 52.02 O
ATOM 5 O5' C A 551 -13.560 98.455 95.612 1.00 56.44 O
ATOM 6 C5' C A 551 -13.540 98.021 94.245 1.00 55.33 C
ATOM 7 C4' C A 551 -12.169 98.219 93.655 1.00 55.12 C
ATOM 8 O4' C A 551 -11.839 99.629 93.660 1.00 55.77 O
ATOM 9 C3' C A 551 -11.012 97.581 94.400 1.00 54.29 C
ATOM 10 O3' C A 551 -10.903 96.201 94.081 1.00 55.09 O
ATOM 11 C2' C A 551 -9.827 98.380 93.874 1.00 54.64 C
ATOM 12 O2' C A 551 -9.435 97.969 92.578 1.00 53.53 O
ATOM 13 C1' C A 551 -10.435 99.782 93.776 1.00 55.32 C
ATOM 14 N1 C A 551 -10.143 100.660 94.925 1.00 56.03 N
ATOM 15 C2 C A 551 -8.970 101.422 94.905 1.00 56.72 C
ATOM 16 O2 C A 551 -8.209 101.333 93.927 1.00 57.60 O
ATOM 17 N3 C A 551 -8.691 102.232 95.951 1.00 56.59 N
ATOM 18 C4 C A 551 -9.524 102.294 96.987 1.00 55.97 C
ATOM 19 N4 C A 551 -9.196 103.096 97.999 1.00 56.56 N
ATOM 20 C5 C A 551 -10.727 101.534 97.033 1.00 56.27 C
ATOM 21 C6 C A 551 -10.995 100.738 95.992 1.00 56.26 C
ATOM 22 P G A 552 -10.720 95.123 95.256 1.00 56.81 P
ATOM 23 OP1 G A 552 -10.726 93.770 94.635 1.00 55.66 O
ATOM 24 OP2 G A 552 -11.676 95.438 96.342 1.00 56.96 O
ATOM 25 O5' G A 552 -9.261 95.410 95.820 1.00 58.65 O
TER
ATOM 1 O3' A B 581 0.558 107.006 97.380 1.00 50.00 O
ATOM 2 P C B 582 -0.549 107.951 96.708 1.00 48.21 P
ATOM 3 OP1 C B 582 -0.008 109.325 96.584 1.00 47.52 O
ATOM 4 OP2 C B 582 -1.808 107.735 97.447 1.00 50.56 O
ATOM 5 O5' C B 582 -0.720 107.339 95.248 1.00 46.97 O
ATOM 6 C5' C B 582 0.404 107.223 94.375 1.00 46.30 C
ATOM 7 C4' C B 582 0.074 106.338 93.199 1.00 47.41 C
ATOM 8 O4' C B 582 -0.254 105.002 93.659 1.00 48.50 O
ATOM 9 C3' C B 582 -1.129 106.745 92.371 1.00 46.34 C
ATOM 10 O3' C B 582 -0.815 107.783 91.458 1.00 45.00 O
ATOM 11 C2' C B 582 -1.482 105.440 91.674 1.00 47.82 C
ATOM 12 O2' C B 582 -0.630 105.143 90.589 1.00 46.10 O
ATOM 13 C1' C B 582 -1.235 104.433 92.800 1.00 50.13 C
ATOM 14 N1 C B 582 -2.459 104.172 93.587 1.00 53.24 N
ATOM 15 C2 C B 582 -3.351 103.171 93.150 1.00 54.50 C
ATOM 16 O2 C B 582 -3.055 102.483 92.155 1.00 52.75 O
ATOM 17 N3 C B 582 -4.507 102.978 93.834 1.00 55.88 N
ATOM 18 C4 C B 582 -4.778 103.718 94.914 1.00 55.06 C
ATOM 19 N4 C B 582 -5.940 103.517 95.535 1.00 55.02 N
ATOM 20 C5 C B 582 -3.871 104.707 95.400 1.00 53.94 C
ATOM 21 C6 C B 582 -2.740 104.901 94.713 1.00 53.10 C
ATOM 22 P U B 583 -1.959 108.813 91.013 1.00 44.90 P
ATOM 23 OP1 U B 583 -1.422 109.642 89.905 1.00 44.60 O
ATOM 24 OP2 U B 583 -2.483 109.482 92.227 1.00 42.15 O
ATOM 25 O5' U B 583 -3.081 107.855 90.413 1.00 43.67 O
TER
ATOM 2 P C A 551 -14.925 98.493 96.425 1.00 54.28 P
ATOM 3 OP1 C A 551 -15.579 97.176 96.219 1.00 53.98 O
ATOM 4 OP2 C A 551 -14.666 98.987 97.803 1.00 52.02 O
ATOM 5 O5' C A 551 -13.560 98.455 95.612 1.00 56.44 O
ATOM 6 C5' C A 551 -13.540 98.021 94.245 1.00 55.33 C
ATOM 7 C4' C A 551 -12.169 98.219 93.655 1.00 55.12 C
ATOM 8 O4' C A 551 -11.839 99.629 93.660 1.00 55.77 O
ATOM 9 C3' C A 551 -11.012 97.581 94.400 1.00 54.29 C
ATOM 10 O3' C A 551 -10.903 96.201 94.081 1.00 55.09 O
ATOM 11 C2' C A 551 -9.827 98.380 93.874 1.00 54.64 C
ATOM 12 O2' C A 551 -9.435 97.969 92.578 1.00 53.53 O
ATOM 13 C1' C A 551 -10.435 99.782 93.776 1.00 55.32 C
ATOM 14 N1 C A 551 -10.143 100.660 94.925 1.00 56.03 N
ATOM 15 C2 C A 551 -8.970 101.422 94.905 1.00 56.72 C
ATOM 16 O2 C A 551 -8.209 101.333 93.927 1.00 57.60 O
ATOM 17 N3 C A 551 -8.691 102.232 95.951 1.00 56.59 N
ATOM 18 C4 C A 551 -9.524 102.294 96.987 1.00 55.97 C
ATOM 19 N4 C A 551 -9.196 103.096 97.999 1.00 56.56 N
ATOM 20 C5 C A 551 -10.727 101.534 97.033 1.00 56.27 C
ATOM 21 C6 C A 551 -10.995 100.738 95.992 1.00 56.26 C
ATOM 22 P G A 552 -10.720 95.123 95.256 1.00 56.81 P
ATOM 23 OP1 G A 552 -10.726 93.770 94.635 1.00 55.66 O
ATOM 24 OP2 G A 552 -11.676 95.438 96.342 1.00 56.96 O
ATOM 25 O5' G A 552 -9.261 95.410 95.820 1.00 58.65 O
TER
ATOM 1 O3' A B 581 0.558 107.006 97.380 1.00 50.00 O
ATOM 2 P C B 582 -0.549 107.951 96.708 1.00 48.21 P
ATOM 3 OP1 C B 582 -0.008 109.325 96.584 1.00 47.52 O
ATOM 4 OP2 C B 582 -1.808 107.735 97.447 1.00 50.56 O
ATOM 5 O5' C B 582 -0.720 107.339 95.248 1.00 46.97 O
ATOM 6 C5' C B 582 0.404 107.223 94.375 1.00 46.30 C
ATOM 7 C4' C B 582 0.074 106.338 93.199 1.00 47.41 C
ATOM 8 O4' C B 582 -0.254 105.002 93.659 1.00 48.50 O
ATOM 9 C3' C B 582 -1.129 106.745 92.371 1.00 46.34 C
ATOM 10 O3' C B 582 -0.815 107.783 91.458 1.00 45.00 O
ATOM 11 C2' C B 582 -1.482 105.440 91.674 1.00 47.82 C
ATOM 12 O2' C B 582 -0.630 105.143 90.589 1.00 46.10 O
ATOM 13 C1' C B 582 -1.235 104.433 92.800 1.00 50.13 C
ATOM 14 N1 C B 582 -2.459 104.172 93.587 1.00 53.24 N
ATOM 15 C2 C B 582 -3.351 103.171 93.150 1.00 54.50 C
ATOM 16 O2 C B 582 -3.055 102.483 92.155 1.00 52.75 O
ATOM 17 N3 C B 582 -4.507 102.978 93.834 1.00 55.88 N
ATOM 18 C4 C B 582 -4.778 103.718 94.914 1.00 55.06 C
ATOM 19 N4 C B 582 -5.940 103.517 95.535 1.00 55.02 N
ATOM 20 C5 C B 582 -3.871 104.707 95.400 1.00 53.94 C
ATOM 21 C6 C B 582 -2.740 104.901 94.713 1.00 53.10 C
ATOM 22 P U B 583 -1.959 108.813 91.013 1.00 44.90 P
ATOM 23 OP1 U B 583 -1.422 109.642 89.905 1.00 44.60 O
ATOM 24 OP2 U B 583 -2.483 109.482 92.227 1.00 42.15 O
ATOM 25 O5' U B 583 -3.081 107.855 90.413 1.00 43.67 O
TER
Atoms:
C2: (-8.970,101.422,94.905)
OP1: (-15.579,97.176,96.219)
OP2: (-14.666,98.987,97.803)
C4: (-9.524,102.294,96.987)
O5': (-13.560,98.455,95.612)
C3': (-11.012,97.581,94.400)
C1': (-10.435,99.782,93.776)
O4': (-11.839,99.629,93.660)
C5': (-13.540,98.021,94.245)
P: (-14.925,98.493,96.425)
O2: (-8.209,101.333,93.927)
C4': (-12.169,98.219,93.655)
C2': (-9.827,98.380,93.874)
O2': (-9.435,97.969,92.578)
N1: (-10.143,100.660,94.925)
N3: (-8.691,102.232,95.951)
N4: (-9.196,103.096,97.999)
C6: (-10.995,100.738,95.992)
C5: (-10.727,101.534,97.033)
O3': (-10.903,96.201,94.081)
OP1: (-15.579,97.176,96.219)
OP2: (-14.666,98.987,97.803)
C4: (-9.524,102.294,96.987)
O5': (-13.560,98.455,95.612)
C3': (-11.012,97.581,94.400)
C1': (-10.435,99.782,93.776)
O4': (-11.839,99.629,93.660)
C5': (-13.540,98.021,94.245)
P: (-14.925,98.493,96.425)
O2: (-8.209,101.333,93.927)
C4': (-12.169,98.219,93.655)
C2': (-9.827,98.380,93.874)
O2': (-9.435,97.969,92.578)
N1: (-10.143,100.660,94.925)
N3: (-8.691,102.232,95.951)
N4: (-9.196,103.096,97.999)
C6: (-10.995,100.738,95.992)
C5: (-10.727,101.534,97.033)
O3': (-10.903,96.201,94.081)
C2: (-3.351,103.171,93.150)
OP1: (-0.008,109.325,96.584)
OP2: (-1.808,107.735,97.447)
C4: (-4.778,103.718,94.914)
O5': (-0.720,107.339,95.248)
C3': (-1.129,106.745,92.371)
C1': (-1.235,104.433,92.800)
O4': (-0.254,105.002,93.659)
C5': (0.404,107.223,94.375)
P: (-0.549,107.951,96.708)
O2: (-3.055,102.483,92.155)
C4': (0.074,106.338,93.199)
C2': (-1.482,105.440,91.674)
O2': (-0.630,105.143,90.589)
N1: (-2.459,104.172,93.587)
N3: (-4.507,102.978,93.834)
N4: (-5.940,103.517,95.535)
C6: (-2.740,104.901,94.713)
C5: (-3.871,104.707,95.400)
O3': (-0.815,107.783,91.458)
OP1: (-0.008,109.325,96.584)
OP2: (-1.808,107.735,97.447)
C4: (-4.778,103.718,94.914)
O5': (-0.720,107.339,95.248)
C3': (-1.129,106.745,92.371)
C1': (-1.235,104.433,92.800)
O4': (-0.254,105.002,93.659)
C5': (0.404,107.223,94.375)
P: (-0.549,107.951,96.708)
O2: (-3.055,102.483,92.155)
C4': (0.074,106.338,93.199)
C2': (-1.482,105.440,91.674)
O2': (-0.630,105.143,90.589)
N1: (-2.459,104.172,93.587)
N3: (-4.507,102.978,93.834)
N4: (-5.940,103.517,95.535)
C6: (-2.740,104.901,94.713)
C5: (-3.871,104.707,95.400)
O3': (-0.815,107.783,91.458)
Image (generated by PyMOL):