Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.254 99.195 121.935 1.00 78.29 O
ATOM 2 P C A 559 -4.679 98.221 123.141 1.00 81.23 P
ATOM 3 OP1 C A 559 -3.991 98.689 124.375 1.00 80.49 O
ATOM 4 OP2 C A 559 -4.504 96.811 122.691 1.00 79.07 O
ATOM 5 O5' C A 559 -6.236 98.500 123.313 1.00 81.60 O
ATOM 6 C5' C A 559 -6.730 99.827 123.584 1.00 82.36 C
ATOM 7 C4' C A 559 -8.232 99.850 123.452 1.00 83.13 C
ATOM 8 O4' C A 559 -8.585 99.527 122.080 1.00 82.34 O
ATOM 9 C3' C A 559 -8.948 98.797 124.283 1.00 84.38 C
ATOM 10 O3' C A 559 -9.159 99.225 125.624 1.00 86.80 O
ATOM 11 C2' C A 559 -10.239 98.587 123.504 1.00 83.10 C
ATOM 12 O2' C A 559 -11.194 99.604 123.743 1.00 82.55 O
ATOM 13 C1' C A 559 -9.727 98.684 122.064 1.00 80.78 C
ATOM 14 N1 C A 559 -9.327 97.382 121.498 1.00 77.39 N
ATOM 15 C2 C A 559 -10.305 96.566 120.913 1.00 77.64 C
ATOM 16 O2 C A 559 -11.484 96.961 120.881 1.00 78.01 O
ATOM 17 N3 C A 559 -9.939 95.367 120.395 1.00 76.58 N
ATOM 18 C4 C A 559 -8.661 94.979 120.445 1.00 74.64 C
ATOM 19 N4 C A 559 -8.346 93.793 119.918 1.00 73.12 N
ATOM 20 C5 C A 559 -7.651 95.791 121.033 1.00 74.10 C
ATOM 21 C6 C A 559 -8.023 96.970 121.542 1.00 75.19 C
ATOM 22 P G A 560 -8.956 98.184 126.831 1.00 89.03 P
ATOM 23 OP1 G A 560 -9.341 98.899 128.073 1.00 89.05 O
ATOM 24 OP2 G A 560 -7.598 97.587 126.720 1.00 89.07 O
ATOM 25 O5' G A 560 -10.042 97.050 126.549 1.00 90.15 O
TER
ATOM 1 O3' C B 573 -10.856 84.430 116.465 1.00 73.59 O
ATOM 2 P C B 574 -10.913 85.248 115.079 1.00 73.79 P
ATOM 3 OP1 C B 574 -12.009 84.685 114.246 1.00 72.29 O
ATOM 4 OP2 C B 574 -9.534 85.280 114.541 1.00 74.68 O
ATOM 5 O5' C B 574 -11.351 86.719 115.510 1.00 71.00 O
ATOM 6 C5' C B 574 -12.683 86.974 115.973 1.00 70.62 C
ATOM 7 C4' C B 574 -12.796 88.372 116.522 1.00 71.75 C
ATOM 8 O4' C B 574 -11.868 88.544 117.621 1.00 72.83 O
ATOM 9 C3' C B 574 -12.441 89.492 115.565 1.00 73.30 C
ATOM 10 O3' C B 574 -13.536 89.781 114.706 1.00 73.75 O
ATOM 11 C2' C B 574 -12.116 90.642 116.516 1.00 74.70 C
ATOM 12 O2' C B 574 -13.257 91.320 117.014 1.00 75.35 O
ATOM 13 C1' C B 574 -11.432 89.897 117.667 1.00 74.29 C
ATOM 14 N1 C B 574 -9.952 89.933 117.634 1.00 75.38 N
ATOM 15 C2 C B 574 -9.284 91.015 118.249 1.00 75.31 C
ATOM 16 O2 C B 574 -9.952 91.919 118.779 1.00 74.25 O
ATOM 17 N3 C B 574 -7.931 91.044 118.240 1.00 74.77 N
ATOM 18 C4 C B 574 -7.244 90.061 117.645 1.00 75.36 C
ATOM 19 N4 C B 574 -5.911 90.132 117.664 1.00 75.84 N
ATOM 20 C5 C B 574 -7.894 88.961 117.006 1.00 74.30 C
ATOM 21 C6 C B 574 -9.233 88.936 117.025 1.00 74.96 C
ATOM 22 P A B 575 -13.263 90.313 113.215 1.00 74.60 P
ATOM 23 OP1 A B 575 -12.657 91.668 113.317 1.00 74.47 O
ATOM 24 OP2 A B 575 -14.511 90.127 112.429 1.00 74.55 O
ATOM 25 O5' A B 575 -12.185 89.299 112.628 1.00 71.92 O
TER
ATOM 2 P C A 559 -4.679 98.221 123.141 1.00 81.23 P
ATOM 3 OP1 C A 559 -3.991 98.689 124.375 1.00 80.49 O
ATOM 4 OP2 C A 559 -4.504 96.811 122.691 1.00 79.07 O
ATOM 5 O5' C A 559 -6.236 98.500 123.313 1.00 81.60 O
ATOM 6 C5' C A 559 -6.730 99.827 123.584 1.00 82.36 C
ATOM 7 C4' C A 559 -8.232 99.850 123.452 1.00 83.13 C
ATOM 8 O4' C A 559 -8.585 99.527 122.080 1.00 82.34 O
ATOM 9 C3' C A 559 -8.948 98.797 124.283 1.00 84.38 C
ATOM 10 O3' C A 559 -9.159 99.225 125.624 1.00 86.80 O
ATOM 11 C2' C A 559 -10.239 98.587 123.504 1.00 83.10 C
ATOM 12 O2' C A 559 -11.194 99.604 123.743 1.00 82.55 O
ATOM 13 C1' C A 559 -9.727 98.684 122.064 1.00 80.78 C
ATOM 14 N1 C A 559 -9.327 97.382 121.498 1.00 77.39 N
ATOM 15 C2 C A 559 -10.305 96.566 120.913 1.00 77.64 C
ATOM 16 O2 C A 559 -11.484 96.961 120.881 1.00 78.01 O
ATOM 17 N3 C A 559 -9.939 95.367 120.395 1.00 76.58 N
ATOM 18 C4 C A 559 -8.661 94.979 120.445 1.00 74.64 C
ATOM 19 N4 C A 559 -8.346 93.793 119.918 1.00 73.12 N
ATOM 20 C5 C A 559 -7.651 95.791 121.033 1.00 74.10 C
ATOM 21 C6 C A 559 -8.023 96.970 121.542 1.00 75.19 C
ATOM 22 P G A 560 -8.956 98.184 126.831 1.00 89.03 P
ATOM 23 OP1 G A 560 -9.341 98.899 128.073 1.00 89.05 O
ATOM 24 OP2 G A 560 -7.598 97.587 126.720 1.00 89.07 O
ATOM 25 O5' G A 560 -10.042 97.050 126.549 1.00 90.15 O
TER
ATOM 1 O3' C B 573 -10.856 84.430 116.465 1.00 73.59 O
ATOM 2 P C B 574 -10.913 85.248 115.079 1.00 73.79 P
ATOM 3 OP1 C B 574 -12.009 84.685 114.246 1.00 72.29 O
ATOM 4 OP2 C B 574 -9.534 85.280 114.541 1.00 74.68 O
ATOM 5 O5' C B 574 -11.351 86.719 115.510 1.00 71.00 O
ATOM 6 C5' C B 574 -12.683 86.974 115.973 1.00 70.62 C
ATOM 7 C4' C B 574 -12.796 88.372 116.522 1.00 71.75 C
ATOM 8 O4' C B 574 -11.868 88.544 117.621 1.00 72.83 O
ATOM 9 C3' C B 574 -12.441 89.492 115.565 1.00 73.30 C
ATOM 10 O3' C B 574 -13.536 89.781 114.706 1.00 73.75 O
ATOM 11 C2' C B 574 -12.116 90.642 116.516 1.00 74.70 C
ATOM 12 O2' C B 574 -13.257 91.320 117.014 1.00 75.35 O
ATOM 13 C1' C B 574 -11.432 89.897 117.667 1.00 74.29 C
ATOM 14 N1 C B 574 -9.952 89.933 117.634 1.00 75.38 N
ATOM 15 C2 C B 574 -9.284 91.015 118.249 1.00 75.31 C
ATOM 16 O2 C B 574 -9.952 91.919 118.779 1.00 74.25 O
ATOM 17 N3 C B 574 -7.931 91.044 118.240 1.00 74.77 N
ATOM 18 C4 C B 574 -7.244 90.061 117.645 1.00 75.36 C
ATOM 19 N4 C B 574 -5.911 90.132 117.664 1.00 75.84 N
ATOM 20 C5 C B 574 -7.894 88.961 117.006 1.00 74.30 C
ATOM 21 C6 C B 574 -9.233 88.936 117.025 1.00 74.96 C
ATOM 22 P A B 575 -13.263 90.313 113.215 1.00 74.60 P
ATOM 23 OP1 A B 575 -12.657 91.668 113.317 1.00 74.47 O
ATOM 24 OP2 A B 575 -14.511 90.127 112.429 1.00 74.55 O
ATOM 25 O5' A B 575 -12.185 89.299 112.628 1.00 71.92 O
TER
Atoms:
C2: (-10.305,96.566,120.913)
OP1: (-3.991,98.689,124.375)
OP2: (-4.504,96.811,122.691)
C4: (-8.661,94.979,120.445)
O5': (-6.236,98.500,123.313)
C3': (-8.948,98.797,124.283)
C1': (-9.727,98.684,122.064)
O4': (-8.585,99.527,122.080)
C5': (-6.730,99.827,123.584)
P: (-4.679,98.221,123.141)
O2: (-11.484,96.961,120.881)
C4': (-8.232,99.850,123.452)
C2': (-10.239,98.587,123.504)
O2': (-11.194,99.604,123.743)
N1: (-9.327,97.382,121.498)
N3: (-9.939,95.367,120.395)
N4: (-8.346,93.793,119.918)
C6: (-8.023,96.970,121.542)
C5: (-7.651,95.791,121.033)
O3': (-9.159,99.225,125.624)
OP1: (-3.991,98.689,124.375)
OP2: (-4.504,96.811,122.691)
C4: (-8.661,94.979,120.445)
O5': (-6.236,98.500,123.313)
C3': (-8.948,98.797,124.283)
C1': (-9.727,98.684,122.064)
O4': (-8.585,99.527,122.080)
C5': (-6.730,99.827,123.584)
P: (-4.679,98.221,123.141)
O2: (-11.484,96.961,120.881)
C4': (-8.232,99.850,123.452)
C2': (-10.239,98.587,123.504)
O2': (-11.194,99.604,123.743)
N1: (-9.327,97.382,121.498)
N3: (-9.939,95.367,120.395)
N4: (-8.346,93.793,119.918)
C6: (-8.023,96.970,121.542)
C5: (-7.651,95.791,121.033)
O3': (-9.159,99.225,125.624)
C2: (-9.284,91.015,118.249)
OP1: (-12.009,84.685,114.246)
OP2: (-9.534,85.280,114.541)
C4: (-7.244,90.061,117.645)
O5': (-11.351,86.719,115.510)
C3': (-12.441,89.492,115.565)
C1': (-11.432,89.897,117.667)
O4': (-11.868,88.544,117.621)
C5': (-12.683,86.974,115.973)
P: (-10.913,85.248,115.079)
O2: (-9.952,91.919,118.779)
C4': (-12.796,88.372,116.522)
C2': (-12.116,90.642,116.516)
O2': (-13.257,91.320,117.014)
N1: (-9.952,89.933,117.634)
N3: (-7.931,91.044,118.240)
N4: (-5.911,90.132,117.664)
C6: (-9.233,88.936,117.025)
C5: (-7.894,88.961,117.006)
O3': (-13.536,89.781,114.706)
OP1: (-12.009,84.685,114.246)
OP2: (-9.534,85.280,114.541)
C4: (-7.244,90.061,117.645)
O5': (-11.351,86.719,115.510)
C3': (-12.441,89.492,115.565)
C1': (-11.432,89.897,117.667)
O4': (-11.868,88.544,117.621)
C5': (-12.683,86.974,115.973)
P: (-10.913,85.248,115.079)
O2: (-9.952,91.919,118.779)
C4': (-12.796,88.372,116.522)
C2': (-12.116,90.642,116.516)
O2': (-13.257,91.320,117.014)
N1: (-9.952,89.933,117.634)
N3: (-7.931,91.044,118.240)
N4: (-5.911,90.132,117.664)
C6: (-9.233,88.936,117.025)
C5: (-7.894,88.961,117.006)
O3': (-13.536,89.781,114.706)
Image (generated by PyMOL):