Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1JBT:D7:D9
Extra
PDB:
ATOM 1 O3' U A 6 -0.568 35.831 -4.080 1.00 36.17 O
ATOM 2 P C A 7 -1.909 34.980 -3.834 1.00 35.88 P
ATOM 3 OP1 C A 7 -2.059 33.990 -4.922 1.00 37.93 O
ATOM 4 OP2 C A 7 -3.024 35.919 -3.545 1.00 41.34 O
ATOM 5 O5' C A 7 -1.606 34.193 -2.489 1.00 39.44 O
ATOM 6 C5' C A 7 -0.379 33.493 -2.305 1.00 36.93 C
ATOM 7 C4' C A 7 -0.154 33.227 -0.835 1.00 38.34 C
ATOM 8 O4' C A 7 0.155 34.482 -0.167 1.00 37.81 O
ATOM 9 C3' C A 7 -1.348 32.665 -0.074 1.00 39.77 C
ATOM 10 O3' C A 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 11 C2' C A 7 -1.074 33.131 1.356 1.00 40.21 C
ATOM 12 O2' C A 7 -0.180 32.312 2.086 1.00 43.52 O
ATOM 13 C1' C A 7 -0.462 34.512 1.109 1.00 37.40 C
ATOM 14 N1 C A 7 -1.448 35.606 1.128 1.00 36.80 N
ATOM 15 C2 C A 7 -1.635 36.329 2.313 1.00 36.27 C
ATOM 16 O2 C A 7 -0.961 36.042 3.309 1.00 38.34 O
ATOM 17 N3 C A 7 -2.548 37.320 2.344 1.00 36.53 N
ATOM 18 C4 C A 7 -3.266 37.600 1.255 1.00 35.35 C
ATOM 19 N4 C A 7 -4.169 38.576 1.341 1.00 36.62 N
ATOM 20 C5 C A 7 -3.093 36.888 0.033 1.00 36.43 C
ATOM 21 C6 C A 7 -2.181 35.911 0.013 1.00 36.27 C
ATOM 22 P A A 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 23 OP1 A A 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 24 OP2 A A 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 25 O5' A A 8 -3.821 31.332 -0.872 1.00 43.01 O
TER
ATOM 1 O3' A B 8 -6.924 33.122 -3.405 1.00 42.81 O
ATOM 2 P G B 9 -6.959 33.313 -4.985 1.00 40.12 P
ATOM 3 OP1 G B 9 -6.536 32.041 -5.613 1.00 43.99 O
ATOM 4 OP2 G B 9 -6.169 34.550 -5.234 1.00 43.20 O
ATOM 5 O5' G B 9 -8.461 33.726 -5.352 1.00 40.93 O
ATOM 6 C5' G B 9 -9.651 33.062 -4.909 1.00 38.54 C
ATOM 7 C4' G B 9 -9.698 32.868 -3.410 1.00 35.46 C
ATOM 8 O4' G B 9 -9.886 34.142 -2.713 1.00 33.81 O
ATOM 9 C3' G B 9 -10.934 32.044 -3.038 1.00 34.04 C
ATOM 10 O3' G B 9 -10.681 31.426 -1.779 1.00 36.55 O
ATOM 11 C2' G B 9 -11.996 33.123 -2.864 1.00 33.37 C
ATOM 12 O2' G B 9 -13.126 32.733 -2.118 1.00 33.43 O
ATOM 13 C1' G B 9 -11.175 34.180 -2.140 1.00 33.35 C
ATOM 14 N9 G B 9 -11.660 35.552 -2.104 1.00 35.64 N
ATOM 15 C8 G B 9 -12.158 36.300 -3.141 1.00 36.26 C
ATOM 16 N7 G B 9 -12.502 37.508 -2.780 1.00 38.51 N
ATOM 17 C5 G B 9 -12.213 37.557 -1.423 1.00 35.88 C
ATOM 18 C6 G B 9 -12.370 38.610 -0.484 1.00 36.98 C
ATOM 19 O6 G B 9 -12.817 39.754 -0.666 1.00 43.53 O
ATOM 20 N1 G B 9 -11.945 38.228 0.781 1.00 33.92 N
ATOM 21 C2 G B 9 -11.439 36.993 1.105 1.00 35.05 C
ATOM 22 N2 G B 9 -11.078 36.813 2.383 1.00 38.66 N
ATOM 23 N3 G B 9 -11.296 36.007 0.246 1.00 35.06 N
ATOM 24 C4 G B 9 -11.696 36.356 -0.991 1.00 35.80 C
ATOM 25 P U B 10 -11.685 30.310 -1.205 1.00 38.34 P
ATOM 26 OP1 U B 10 -12.338 29.642 -2.369 1.00 38.21 O
ATOM 27 OP2 U B 10 -12.518 30.914 -0.143 1.00 33.88 O
ATOM 28 O5' U B 10 -10.714 29.256 -0.505 1.00 41.13 O
TER
ATOM 2 P C A 7 -1.909 34.980 -3.834 1.00 35.88 P
ATOM 3 OP1 C A 7 -2.059 33.990 -4.922 1.00 37.93 O
ATOM 4 OP2 C A 7 -3.024 35.919 -3.545 1.00 41.34 O
ATOM 5 O5' C A 7 -1.606 34.193 -2.489 1.00 39.44 O
ATOM 6 C5' C A 7 -0.379 33.493 -2.305 1.00 36.93 C
ATOM 7 C4' C A 7 -0.154 33.227 -0.835 1.00 38.34 C
ATOM 8 O4' C A 7 0.155 34.482 -0.167 1.00 37.81 O
ATOM 9 C3' C A 7 -1.348 32.665 -0.074 1.00 39.77 C
ATOM 10 O3' C A 7 -1.408 31.247 -0.189 1.00 42.25 O
ATOM 11 C2' C A 7 -1.074 33.131 1.356 1.00 40.21 C
ATOM 12 O2' C A 7 -0.180 32.312 2.086 1.00 43.52 O
ATOM 13 C1' C A 7 -0.462 34.512 1.109 1.00 37.40 C
ATOM 14 N1 C A 7 -1.448 35.606 1.128 1.00 36.80 N
ATOM 15 C2 C A 7 -1.635 36.329 2.313 1.00 36.27 C
ATOM 16 O2 C A 7 -0.961 36.042 3.309 1.00 38.34 O
ATOM 17 N3 C A 7 -2.548 37.320 2.344 1.00 36.53 N
ATOM 18 C4 C A 7 -3.266 37.600 1.255 1.00 35.35 C
ATOM 19 N4 C A 7 -4.169 38.576 1.341 1.00 36.62 N
ATOM 20 C5 C A 7 -3.093 36.888 0.033 1.00 36.43 C
ATOM 21 C6 C A 7 -2.181 35.911 0.013 1.00 36.27 C
ATOM 22 P A A 8 -2.812 30.487 0.013 1.00 41.37 P
ATOM 23 OP1 A A 8 -3.203 30.638 1.437 1.00 40.59 O
ATOM 24 OP2 A A 8 -2.715 29.122 -0.581 1.00 42.71 O
ATOM 25 O5' A A 8 -3.821 31.332 -0.872 1.00 43.01 O
TER
ATOM 1 O3' A B 8 -6.924 33.122 -3.405 1.00 42.81 O
ATOM 2 P G B 9 -6.959 33.313 -4.985 1.00 40.12 P
ATOM 3 OP1 G B 9 -6.536 32.041 -5.613 1.00 43.99 O
ATOM 4 OP2 G B 9 -6.169 34.550 -5.234 1.00 43.20 O
ATOM 5 O5' G B 9 -8.461 33.726 -5.352 1.00 40.93 O
ATOM 6 C5' G B 9 -9.651 33.062 -4.909 1.00 38.54 C
ATOM 7 C4' G B 9 -9.698 32.868 -3.410 1.00 35.46 C
ATOM 8 O4' G B 9 -9.886 34.142 -2.713 1.00 33.81 O
ATOM 9 C3' G B 9 -10.934 32.044 -3.038 1.00 34.04 C
ATOM 10 O3' G B 9 -10.681 31.426 -1.779 1.00 36.55 O
ATOM 11 C2' G B 9 -11.996 33.123 -2.864 1.00 33.37 C
ATOM 12 O2' G B 9 -13.126 32.733 -2.118 1.00 33.43 O
ATOM 13 C1' G B 9 -11.175 34.180 -2.140 1.00 33.35 C
ATOM 14 N9 G B 9 -11.660 35.552 -2.104 1.00 35.64 N
ATOM 15 C8 G B 9 -12.158 36.300 -3.141 1.00 36.26 C
ATOM 16 N7 G B 9 -12.502 37.508 -2.780 1.00 38.51 N
ATOM 17 C5 G B 9 -12.213 37.557 -1.423 1.00 35.88 C
ATOM 18 C6 G B 9 -12.370 38.610 -0.484 1.00 36.98 C
ATOM 19 O6 G B 9 -12.817 39.754 -0.666 1.00 43.53 O
ATOM 20 N1 G B 9 -11.945 38.228 0.781 1.00 33.92 N
ATOM 21 C2 G B 9 -11.439 36.993 1.105 1.00 35.05 C
ATOM 22 N2 G B 9 -11.078 36.813 2.383 1.00 38.66 N
ATOM 23 N3 G B 9 -11.296 36.007 0.246 1.00 35.06 N
ATOM 24 C4 G B 9 -11.696 36.356 -0.991 1.00 35.80 C
ATOM 25 P U B 10 -11.685 30.310 -1.205 1.00 38.34 P
ATOM 26 OP1 U B 10 -12.338 29.642 -2.369 1.00 38.21 O
ATOM 27 OP2 U B 10 -12.518 30.914 -0.143 1.00 33.88 O
ATOM 28 O5' U B 10 -10.714 29.256 -0.505 1.00 41.13 O
TER
Atoms:
C2: (-1.635,36.329,2.313)
OP1: (-2.059,33.990,-4.922)
OP2: (-3.024,35.919,-3.545)
C4: (-3.266,37.600,1.255)
O5': (-1.606,34.193,-2.489)
C3': (-1.348,32.665,-0.074)
C1': (-0.462,34.512,1.109)
O4': (0.155,34.482,-0.167)
C5': (-0.379,33.493,-2.305)
P: (-1.909,34.980,-3.834)
O2: (-0.961,36.042,3.309)
C4': (-0.154,33.227,-0.835)
C2': (-1.074,33.131,1.356)
O2': (-0.180,32.312,2.086)
N1: (-1.448,35.606,1.128)
N3: (-2.548,37.320,2.344)
N4: (-4.169,38.576,1.341)
C6: (-2.181,35.911,0.013)
C5: (-3.093,36.888,0.033)
O3': (-1.408,31.247,-0.189)
OP1: (-2.059,33.990,-4.922)
OP2: (-3.024,35.919,-3.545)
C4: (-3.266,37.600,1.255)
O5': (-1.606,34.193,-2.489)
C3': (-1.348,32.665,-0.074)
C1': (-0.462,34.512,1.109)
O4': (0.155,34.482,-0.167)
C5': (-0.379,33.493,-2.305)
P: (-1.909,34.980,-3.834)
O2: (-0.961,36.042,3.309)
C4': (-0.154,33.227,-0.835)
C2': (-1.074,33.131,1.356)
O2': (-0.180,32.312,2.086)
N1: (-1.448,35.606,1.128)
N3: (-2.548,37.320,2.344)
N4: (-4.169,38.576,1.341)
C6: (-2.181,35.911,0.013)
C5: (-3.093,36.888,0.033)
O3': (-1.408,31.247,-0.189)
OP1: (-6.536,32.041,-5.613)
OP2: (-6.169,34.550,-5.234)
C3': (-10.934,32.044,-3.038)
C1': (-11.175,34.180,-2.140)
C5': (-9.651,33.062,-4.909)
O6: (-12.817,39.754,-0.666)
O4': (-9.886,34.142,-2.713)
C8: (-12.158,36.300,-3.141)
C2: (-11.439,36.993,1.105)
C6: (-12.370,38.610,-0.484)
C5: (-12.213,37.557,-1.423)
C4: (-11.696,36.356,-0.991)
P: (-6.959,33.313,-4.985)
C4': (-9.698,32.868,-3.410)
C2': (-11.996,33.123,-2.864)
O2': (-13.126,32.733,-2.118)
N1: (-11.945,38.228,0.781)
N2: (-11.078,36.813,2.383)
N3: (-11.296,36.007,0.246)
N7: (-12.502,37.508,-2.780)
N9: (-11.660,35.552,-2.104)
O5': (-8.461,33.726,-5.352)
O3': (-10.681,31.426,-1.779)
OP2: (-6.169,34.550,-5.234)
C3': (-10.934,32.044,-3.038)
C1': (-11.175,34.180,-2.140)
C5': (-9.651,33.062,-4.909)
O6: (-12.817,39.754,-0.666)
O4': (-9.886,34.142,-2.713)
C8: (-12.158,36.300,-3.141)
C2: (-11.439,36.993,1.105)
C6: (-12.370,38.610,-0.484)
C5: (-12.213,37.557,-1.423)
C4: (-11.696,36.356,-0.991)
P: (-6.959,33.313,-4.985)
C4': (-9.698,32.868,-3.410)
C2': (-11.996,33.123,-2.864)
O2': (-13.126,32.733,-2.118)
N1: (-11.945,38.228,0.781)
N2: (-11.078,36.813,2.383)
N3: (-11.296,36.007,0.246)
N7: (-12.502,37.508,-2.780)
N9: (-11.660,35.552,-2.104)
O5': (-8.461,33.726,-5.352)
O3': (-10.681,31.426,-1.779)
Image (generated by PyMOL):