Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0559:0574
Extra
PDB:
ATOM 1 O3' C A 558 -4.246 99.346 121.938 1.00 73.20 O
ATOM 2 P C A 559 -4.702 98.360 123.125 1.00 75.94 P
ATOM 3 OP1 C A 559 -4.028 98.811 124.374 1.00 75.54 O
ATOM 4 OP2 C A 559 -4.532 96.952 122.665 1.00 73.21 O
ATOM 5 O5' C A 559 -6.261 98.645 123.275 1.00 75.70 O
ATOM 6 C5' C A 559 -6.755 99.972 123.551 1.00 77.27 C
ATOM 7 C4' C A 559 -8.258 99.995 123.418 1.00 78.45 C
ATOM 8 O4' C A 559 -8.606 99.641 122.053 1.00 77.92 O
ATOM 9 C3' C A 559 -8.976 98.959 124.270 1.00 80.04 C
ATOM 10 O3' C A 559 -9.198 99.415 125.600 1.00 82.37 O
ATOM 11 C2' C A 559 -10.262 98.724 123.490 1.00 78.60 C
ATOM 12 O2' C A 559 -11.223 99.741 123.699 1.00 78.16 O
ATOM 13 C1' C A 559 -9.744 98.792 122.050 1.00 76.76 C
ATOM 14 N1 C A 559 -9.336 97.480 121.508 1.00 73.94 N
ATOM 15 C2 C A 559 -10.312 96.641 120.948 1.00 73.79 C
ATOM 16 O2 C A 559 -11.497 97.017 120.931 1.00 74.43 O
ATOM 17 N3 C A 559 -9.937 95.441 120.441 1.00 73.11 N
ATOM 18 C4 C A 559 -8.653 95.071 120.477 1.00 71.19 C
ATOM 19 N4 C A 559 -8.328 93.884 119.958 1.00 69.50 N
ATOM 20 C5 C A 559 -7.645 95.902 121.045 1.00 70.56 C
ATOM 21 C6 C A 559 -8.026 97.084 121.543 1.00 71.70 C
ATOM 22 P G A 560 -9.001 98.401 126.831 1.00 85.54 P
ATOM 23 OP1 G A 560 -9.417 99.131 128.056 1.00 84.61 O
ATOM 24 OP2 G A 560 -7.632 97.819 126.752 1.00 85.29 O
ATOM 25 O5' G A 560 -10.059 97.240 126.551 1.00 86.17 O
TER
ATOM 1 O3' C B 573 -10.764 84.546 116.453 1.00 69.88 O
ATOM 2 P C B 574 -10.786 85.333 115.049 1.00 70.54 P
ATOM 3 OP1 C B 574 -11.848 84.734 114.201 1.00 69.58 O
ATOM 4 OP2 C B 574 -9.390 85.363 114.550 1.00 72.30 O
ATOM 5 O5' C B 574 -11.245 86.811 115.433 1.00 67.34 O
ATOM 6 C5' C B 574 -12.581 87.061 115.895 1.00 65.63 C
ATOM 7 C4' C B 574 -12.692 88.443 116.485 1.00 65.45 C
ATOM 8 O4' C B 574 -11.752 88.591 117.576 1.00 65.79 O
ATOM 9 C3' C B 574 -12.350 89.590 115.558 1.00 66.78 C
ATOM 10 O3' C B 574 -13.448 89.897 114.713 1.00 68.23 O
ATOM 11 C2' C B 574 -12.032 90.718 116.535 1.00 67.70 C
ATOM 12 O2' C B 574 -13.177 91.382 117.040 1.00 67.24 O
ATOM 13 C1' C B 574 -11.340 89.950 117.666 1.00 67.30 C
ATOM 14 N1 C B 574 -9.860 90.016 117.638 1.00 68.48 N
ATOM 15 C2 C B 574 -9.219 91.140 118.204 1.00 67.97 C
ATOM 16 O2 C B 574 -9.908 92.051 118.690 1.00 67.46 O
ATOM 17 N3 C B 574 -7.868 91.202 118.196 1.00 67.99 N
ATOM 18 C4 C B 574 -7.155 90.213 117.646 1.00 69.22 C
ATOM 19 N4 C B 574 -5.823 90.321 117.658 1.00 69.38 N
ATOM 20 C5 C B 574 -7.777 89.068 117.058 1.00 67.78 C
ATOM 21 C6 C B 574 -9.115 89.010 117.078 1.00 68.70 C
ATOM 22 P A B 575 -13.183 90.467 113.236 1.00 69.41 P
ATOM 23 OP1 A B 575 -12.610 91.835 113.366 1.00 68.76 O
ATOM 24 OP2 A B 575 -14.426 90.263 112.448 1.00 69.77 O
ATOM 25 O5' A B 575 -12.082 89.487 112.635 1.00 67.05 O
TER
ATOM 2 P C A 559 -4.702 98.360 123.125 1.00 75.94 P
ATOM 3 OP1 C A 559 -4.028 98.811 124.374 1.00 75.54 O
ATOM 4 OP2 C A 559 -4.532 96.952 122.665 1.00 73.21 O
ATOM 5 O5' C A 559 -6.261 98.645 123.275 1.00 75.70 O
ATOM 6 C5' C A 559 -6.755 99.972 123.551 1.00 77.27 C
ATOM 7 C4' C A 559 -8.258 99.995 123.418 1.00 78.45 C
ATOM 8 O4' C A 559 -8.606 99.641 122.053 1.00 77.92 O
ATOM 9 C3' C A 559 -8.976 98.959 124.270 1.00 80.04 C
ATOM 10 O3' C A 559 -9.198 99.415 125.600 1.00 82.37 O
ATOM 11 C2' C A 559 -10.262 98.724 123.490 1.00 78.60 C
ATOM 12 O2' C A 559 -11.223 99.741 123.699 1.00 78.16 O
ATOM 13 C1' C A 559 -9.744 98.792 122.050 1.00 76.76 C
ATOM 14 N1 C A 559 -9.336 97.480 121.508 1.00 73.94 N
ATOM 15 C2 C A 559 -10.312 96.641 120.948 1.00 73.79 C
ATOM 16 O2 C A 559 -11.497 97.017 120.931 1.00 74.43 O
ATOM 17 N3 C A 559 -9.937 95.441 120.441 1.00 73.11 N
ATOM 18 C4 C A 559 -8.653 95.071 120.477 1.00 71.19 C
ATOM 19 N4 C A 559 -8.328 93.884 119.958 1.00 69.50 N
ATOM 20 C5 C A 559 -7.645 95.902 121.045 1.00 70.56 C
ATOM 21 C6 C A 559 -8.026 97.084 121.543 1.00 71.70 C
ATOM 22 P G A 560 -9.001 98.401 126.831 1.00 85.54 P
ATOM 23 OP1 G A 560 -9.417 99.131 128.056 1.00 84.61 O
ATOM 24 OP2 G A 560 -7.632 97.819 126.752 1.00 85.29 O
ATOM 25 O5' G A 560 -10.059 97.240 126.551 1.00 86.17 O
TER
ATOM 1 O3' C B 573 -10.764 84.546 116.453 1.00 69.88 O
ATOM 2 P C B 574 -10.786 85.333 115.049 1.00 70.54 P
ATOM 3 OP1 C B 574 -11.848 84.734 114.201 1.00 69.58 O
ATOM 4 OP2 C B 574 -9.390 85.363 114.550 1.00 72.30 O
ATOM 5 O5' C B 574 -11.245 86.811 115.433 1.00 67.34 O
ATOM 6 C5' C B 574 -12.581 87.061 115.895 1.00 65.63 C
ATOM 7 C4' C B 574 -12.692 88.443 116.485 1.00 65.45 C
ATOM 8 O4' C B 574 -11.752 88.591 117.576 1.00 65.79 O
ATOM 9 C3' C B 574 -12.350 89.590 115.558 1.00 66.78 C
ATOM 10 O3' C B 574 -13.448 89.897 114.713 1.00 68.23 O
ATOM 11 C2' C B 574 -12.032 90.718 116.535 1.00 67.70 C
ATOM 12 O2' C B 574 -13.177 91.382 117.040 1.00 67.24 O
ATOM 13 C1' C B 574 -11.340 89.950 117.666 1.00 67.30 C
ATOM 14 N1 C B 574 -9.860 90.016 117.638 1.00 68.48 N
ATOM 15 C2 C B 574 -9.219 91.140 118.204 1.00 67.97 C
ATOM 16 O2 C B 574 -9.908 92.051 118.690 1.00 67.46 O
ATOM 17 N3 C B 574 -7.868 91.202 118.196 1.00 67.99 N
ATOM 18 C4 C B 574 -7.155 90.213 117.646 1.00 69.22 C
ATOM 19 N4 C B 574 -5.823 90.321 117.658 1.00 69.38 N
ATOM 20 C5 C B 574 -7.777 89.068 117.058 1.00 67.78 C
ATOM 21 C6 C B 574 -9.115 89.010 117.078 1.00 68.70 C
ATOM 22 P A B 575 -13.183 90.467 113.236 1.00 69.41 P
ATOM 23 OP1 A B 575 -12.610 91.835 113.366 1.00 68.76 O
ATOM 24 OP2 A B 575 -14.426 90.263 112.448 1.00 69.77 O
ATOM 25 O5' A B 575 -12.082 89.487 112.635 1.00 67.05 O
TER
Atoms:
C2: (-10.312,96.641,120.948)
OP1: (-4.028,98.811,124.374)
OP2: (-4.532,96.952,122.665)
C4: (-8.653,95.071,120.477)
O5': (-6.261,98.645,123.275)
C3': (-8.976,98.959,124.270)
C1': (-9.744,98.792,122.050)
O4': (-8.606,99.641,122.053)
C5': (-6.755,99.972,123.551)
P: (-4.702,98.360,123.125)
O2: (-11.497,97.017,120.931)
C4': (-8.258,99.995,123.418)
C2': (-10.262,98.724,123.490)
O2': (-11.223,99.741,123.699)
N1: (-9.336,97.480,121.508)
N3: (-9.937,95.441,120.441)
N4: (-8.328,93.884,119.958)
C6: (-8.026,97.084,121.543)
C5: (-7.645,95.902,121.045)
O3': (-9.198,99.415,125.600)
OP1: (-4.028,98.811,124.374)
OP2: (-4.532,96.952,122.665)
C4: (-8.653,95.071,120.477)
O5': (-6.261,98.645,123.275)
C3': (-8.976,98.959,124.270)
C1': (-9.744,98.792,122.050)
O4': (-8.606,99.641,122.053)
C5': (-6.755,99.972,123.551)
P: (-4.702,98.360,123.125)
O2: (-11.497,97.017,120.931)
C4': (-8.258,99.995,123.418)
C2': (-10.262,98.724,123.490)
O2': (-11.223,99.741,123.699)
N1: (-9.336,97.480,121.508)
N3: (-9.937,95.441,120.441)
N4: (-8.328,93.884,119.958)
C6: (-8.026,97.084,121.543)
C5: (-7.645,95.902,121.045)
O3': (-9.198,99.415,125.600)
C2: (-9.219,91.140,118.204)
OP1: (-11.848,84.734,114.201)
OP2: (-9.390,85.363,114.550)
C4: (-7.155,90.213,117.646)
O5': (-11.245,86.811,115.433)
C3': (-12.350,89.590,115.558)
C1': (-11.340,89.950,117.666)
O4': (-11.752,88.591,117.576)
C5': (-12.581,87.061,115.895)
P: (-10.786,85.333,115.049)
O2: (-9.908,92.051,118.690)
C4': (-12.692,88.443,116.485)
C2': (-12.032,90.718,116.535)
O2': (-13.177,91.382,117.040)
N1: (-9.860,90.016,117.638)
N3: (-7.868,91.202,118.196)
N4: (-5.823,90.321,117.658)
C6: (-9.115,89.010,117.078)
C5: (-7.777,89.068,117.058)
O3': (-13.448,89.897,114.713)
OP1: (-11.848,84.734,114.201)
OP2: (-9.390,85.363,114.550)
C4: (-7.155,90.213,117.646)
O5': (-11.245,86.811,115.433)
C3': (-12.350,89.590,115.558)
C1': (-11.340,89.950,117.666)
O4': (-11.752,88.591,117.576)
C5': (-12.581,87.061,115.895)
P: (-10.786,85.333,115.049)
O2: (-9.908,92.051,118.690)
C4': (-12.692,88.443,116.485)
C2': (-12.032,90.718,116.535)
O2': (-13.177,91.382,117.040)
N1: (-9.860,90.016,117.638)
N3: (-7.868,91.202,118.196)
N4: (-5.823,90.321,117.658)
C6: (-9.115,89.010,117.078)
C5: (-7.777,89.068,117.058)
O3': (-13.448,89.897,114.713)
Image (generated by PyMOL):