Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01234:01240
Extra
PDB:
ATOM 1 O3' A A1233 5.140 80.056 68.434 1.00 60.06 O
ATOM 2 P C A1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 3 OP1 C A1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 4 OP2 C A1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 5 O5' C A1234 4.729 81.448 66.392 1.00 61.42 O
ATOM 6 C5' C A1234 3.301 81.477 66.428 1.00 62.30 C
ATOM 7 C4' C A1234 2.790 82.851 66.096 1.00 63.15 C
ATOM 8 O4' C A1234 3.163 83.786 67.136 1.00 63.49 O
ATOM 9 C3' C A1234 3.355 83.494 64.850 1.00 63.16 C
ATOM 10 O3' C A1234 2.782 82.989 63.672 1.00 66.31 O
ATOM 11 C2' C A1234 3.005 84.949 65.074 1.00 62.84 C
ATOM 12 O2' C A1234 1.650 85.216 64.792 1.00 60.03 O
ATOM 13 C1' C A1234 3.293 85.083 66.573 1.00 63.20 C
ATOM 14 N1 C A1234 4.664 85.569 66.816 1.00 63.24 N
ATOM 15 C2 C A1234 4.883 86.953 66.880 1.00 63.38 C
ATOM 16 O2 C A1234 3.912 87.723 66.794 1.00 64.59 O
ATOM 17 N3 C A1234 6.141 87.416 67.040 1.00 62.88 N
ATOM 18 C4 C A1234 7.155 86.561 67.153 1.00 63.05 C
ATOM 19 N4 C A1234 8.381 87.068 67.298 1.00 62.64 N
ATOM 20 C5 C A1234 6.959 85.146 67.121 1.00 62.93 C
ATOM 21 C6 C A1234 5.711 84.699 66.952 1.00 61.93 C
ATOM 22 P U A1235 3.716 82.757 62.395 1.00 69.05 P
ATOM 23 OP1 U A1235 2.856 82.266 61.295 1.00 70.76 O
ATOM 24 OP2 U A1235 4.884 81.949 62.830 1.00 67.62 O
ATOM 25 O5' U A1235 4.207 84.228 62.033 1.00 69.85 O
TER
ATOM 1 O3' A B1239 8.248 98.586 66.587 1.00100.74 O
ATOM 2 P C B1240 7.682 98.254 68.060 1.00101.29 P
ATOM 3 OP1 C B1240 7.899 99.439 68.927 1.00102.39 O
ATOM 4 OP2 C B1240 8.182 96.923 68.501 1.00101.61 O
ATOM 5 O5' C B1240 6.115 98.129 67.845 1.00 98.73 O
ATOM 6 C5' C B1240 5.300 97.530 68.845 1.00 94.28 C
ATOM 7 C4' C B1240 3.957 97.185 68.274 1.00 91.96 C
ATOM 8 O4' C B1240 4.110 96.325 67.120 1.00 91.16 O
ATOM 9 C3' C B1240 3.107 96.379 69.224 1.00 90.91 C
ATOM 10 O3' C B1240 2.473 97.233 70.142 1.00 89.11 O
ATOM 11 C2' C B1240 2.149 95.664 68.291 1.00 91.10 C
ATOM 12 O2' C B1240 1.084 96.494 67.869 1.00 91.41 O
ATOM 13 C1' C B1240 3.078 95.350 67.114 1.00 90.98 C
ATOM 14 N1 C B1240 3.707 94.015 67.173 1.00 89.59 N
ATOM 15 C2 C B1240 2.891 92.875 67.190 1.00 90.09 C
ATOM 16 O2 C B1240 1.655 93.013 67.214 1.00 91.25 O
ATOM 17 N3 C B1240 3.468 91.652 67.184 1.00 89.67 N
ATOM 18 C4 C B1240 4.796 91.542 67.181 1.00 89.71 C
ATOM 19 N4 C B1240 5.321 90.317 67.152 1.00 90.22 N
ATOM 20 C5 C B1240 5.648 92.682 67.199 1.00 89.76 C
ATOM 21 C6 C B1240 5.068 93.886 67.193 1.00 89.22 C
ATOM 22 P U B1241 2.601 96.923 71.699 1.00 88.92 P
ATOM 23 OP1 U B1241 1.835 97.972 72.409 1.00 89.55 O
ATOM 24 OP2 U B1241 4.032 96.706 72.026 1.00 88.40 O
ATOM 25 O5' U B1241 1.830 95.539 71.841 1.00 88.26 O
TER
ATOM 2 P C A1234 5.511 80.150 66.873 1.00 61.39 P
ATOM 3 OP1 C A1234 4.922 78.973 66.199 1.00 62.40 O
ATOM 4 OP2 C A1234 6.964 80.413 66.740 1.00 63.22 O
ATOM 5 O5' C A1234 4.729 81.448 66.392 1.00 61.42 O
ATOM 6 C5' C A1234 3.301 81.477 66.428 1.00 62.30 C
ATOM 7 C4' C A1234 2.790 82.851 66.096 1.00 63.15 C
ATOM 8 O4' C A1234 3.163 83.786 67.136 1.00 63.49 O
ATOM 9 C3' C A1234 3.355 83.494 64.850 1.00 63.16 C
ATOM 10 O3' C A1234 2.782 82.989 63.672 1.00 66.31 O
ATOM 11 C2' C A1234 3.005 84.949 65.074 1.00 62.84 C
ATOM 12 O2' C A1234 1.650 85.216 64.792 1.00 60.03 O
ATOM 13 C1' C A1234 3.293 85.083 66.573 1.00 63.20 C
ATOM 14 N1 C A1234 4.664 85.569 66.816 1.00 63.24 N
ATOM 15 C2 C A1234 4.883 86.953 66.880 1.00 63.38 C
ATOM 16 O2 C A1234 3.912 87.723 66.794 1.00 64.59 O
ATOM 17 N3 C A1234 6.141 87.416 67.040 1.00 62.88 N
ATOM 18 C4 C A1234 7.155 86.561 67.153 1.00 63.05 C
ATOM 19 N4 C A1234 8.381 87.068 67.298 1.00 62.64 N
ATOM 20 C5 C A1234 6.959 85.146 67.121 1.00 62.93 C
ATOM 21 C6 C A1234 5.711 84.699 66.952 1.00 61.93 C
ATOM 22 P U A1235 3.716 82.757 62.395 1.00 69.05 P
ATOM 23 OP1 U A1235 2.856 82.266 61.295 1.00 70.76 O
ATOM 24 OP2 U A1235 4.884 81.949 62.830 1.00 67.62 O
ATOM 25 O5' U A1235 4.207 84.228 62.033 1.00 69.85 O
TER
ATOM 1 O3' A B1239 8.248 98.586 66.587 1.00100.74 O
ATOM 2 P C B1240 7.682 98.254 68.060 1.00101.29 P
ATOM 3 OP1 C B1240 7.899 99.439 68.927 1.00102.39 O
ATOM 4 OP2 C B1240 8.182 96.923 68.501 1.00101.61 O
ATOM 5 O5' C B1240 6.115 98.129 67.845 1.00 98.73 O
ATOM 6 C5' C B1240 5.300 97.530 68.845 1.00 94.28 C
ATOM 7 C4' C B1240 3.957 97.185 68.274 1.00 91.96 C
ATOM 8 O4' C B1240 4.110 96.325 67.120 1.00 91.16 O
ATOM 9 C3' C B1240 3.107 96.379 69.224 1.00 90.91 C
ATOM 10 O3' C B1240 2.473 97.233 70.142 1.00 89.11 O
ATOM 11 C2' C B1240 2.149 95.664 68.291 1.00 91.10 C
ATOM 12 O2' C B1240 1.084 96.494 67.869 1.00 91.41 O
ATOM 13 C1' C B1240 3.078 95.350 67.114 1.00 90.98 C
ATOM 14 N1 C B1240 3.707 94.015 67.173 1.00 89.59 N
ATOM 15 C2 C B1240 2.891 92.875 67.190 1.00 90.09 C
ATOM 16 O2 C B1240 1.655 93.013 67.214 1.00 91.25 O
ATOM 17 N3 C B1240 3.468 91.652 67.184 1.00 89.67 N
ATOM 18 C4 C B1240 4.796 91.542 67.181 1.00 89.71 C
ATOM 19 N4 C B1240 5.321 90.317 67.152 1.00 90.22 N
ATOM 20 C5 C B1240 5.648 92.682 67.199 1.00 89.76 C
ATOM 21 C6 C B1240 5.068 93.886 67.193 1.00 89.22 C
ATOM 22 P U B1241 2.601 96.923 71.699 1.00 88.92 P
ATOM 23 OP1 U B1241 1.835 97.972 72.409 1.00 89.55 O
ATOM 24 OP2 U B1241 4.032 96.706 72.026 1.00 88.40 O
ATOM 25 O5' U B1241 1.830 95.539 71.841 1.00 88.26 O
TER
Atoms:
C2: (4.883,86.953,66.880)
OP1: (4.922,78.973,66.199)
OP2: (6.964,80.413,66.740)
C4: (7.155,86.561,67.153)
O5': (4.729,81.448,66.392)
C3': (3.355,83.494,64.850)
C1': (3.293,85.083,66.573)
O4': (3.163,83.786,67.136)
C5': (3.301,81.477,66.428)
P: (5.511,80.150,66.873)
O2: (3.912,87.723,66.794)
C4': (2.790,82.851,66.096)
C2': (3.005,84.949,65.074)
O2': (1.650,85.216,64.792)
N1: (4.664,85.569,66.816)
N3: (6.141,87.416,67.040)
N4: (8.381,87.068,67.298)
C6: (5.711,84.699,66.952)
C5: (6.959,85.146,67.121)
O3': (2.782,82.989,63.672)
OP1: (4.922,78.973,66.199)
OP2: (6.964,80.413,66.740)
C4: (7.155,86.561,67.153)
O5': (4.729,81.448,66.392)
C3': (3.355,83.494,64.850)
C1': (3.293,85.083,66.573)
O4': (3.163,83.786,67.136)
C5': (3.301,81.477,66.428)
P: (5.511,80.150,66.873)
O2: (3.912,87.723,66.794)
C4': (2.790,82.851,66.096)
C2': (3.005,84.949,65.074)
O2': (1.650,85.216,64.792)
N1: (4.664,85.569,66.816)
N3: (6.141,87.416,67.040)
N4: (8.381,87.068,67.298)
C6: (5.711,84.699,66.952)
C5: (6.959,85.146,67.121)
O3': (2.782,82.989,63.672)
C2: (2.891,92.875,67.190)
OP1: (7.899,99.439,68.927)
OP2: (8.182,96.923,68.501)
C4: (4.796,91.542,67.181)
O5': (6.115,98.129,67.845)
C3': (3.107,96.379,69.224)
C1': (3.078,95.350,67.114)
O4': (4.110,96.325,67.120)
C5': (5.300,97.530,68.845)
P: (7.682,98.254,68.060)
O2: (1.655,93.013,67.214)
C4': (3.957,97.185,68.274)
C2': (2.149,95.664,68.291)
O2': (1.084,96.494,67.869)
N1: (3.707,94.015,67.173)
N3: (3.468,91.652,67.184)
N4: (5.321,90.317,67.152)
C6: (5.068,93.886,67.193)
C5: (5.648,92.682,67.199)
O3': (2.473,97.233,70.142)
OP1: (7.899,99.439,68.927)
OP2: (8.182,96.923,68.501)
C4: (4.796,91.542,67.181)
O5': (6.115,98.129,67.845)
C3': (3.107,96.379,69.224)
C1': (3.078,95.350,67.114)
O4': (4.110,96.325,67.120)
C5': (5.300,97.530,68.845)
P: (7.682,98.254,68.060)
O2: (1.655,93.013,67.214)
C4': (3.957,97.185,68.274)
C2': (2.149,95.664,68.291)
O2': (1.084,96.494,67.869)
N1: (3.707,94.015,67.173)
N3: (3.468,91.652,67.184)
N4: (5.321,90.317,67.152)
C6: (5.068,93.886,67.193)
C5: (5.648,92.682,67.199)
O3': (2.473,97.233,70.142)
Image (generated by PyMOL):